Wall clock time and date at job start Tue Mar 31 2020 12:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47009 * 2 1 4 4 C 1.46505 * 119.99939 * 269.99958 * 3 2 1 5 5 C 1.50699 * 109.46846 * 270.00379 * 4 3 2 6 6 H 1.08002 * 119.99783 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00249 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00257 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99744 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47719 * 89.99675 * 9 7 5 11 11 H 1.48500 * 109.47037 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.46996 * 329.99715 * 9 7 5 13 13 C 1.34768 * 120.00487 * 89.99329 * 3 2 1 14 14 O 1.21695 * 120.00660 * 179.97438 * 13 3 2 15 15 C 1.46438 * 119.99767 * 0.02562 * 13 3 2 16 16 C 1.34806 * 119.99843 * 187.00707 * 15 13 3 17 17 C 1.47220 * 120.00230 * 11.30286 * 16 15 13 18 18 C 1.39776 * 120.11808 * 222.27459 * 17 16 15 19 19 C 1.38439 * 119.88026 * 180.25511 * 18 17 16 20 20 O 1.35909 * 119.93963 * 180.02562 * 19 18 17 21 21 C 1.42904 * 116.99889 * 180.02562 * 20 19 18 22 22 C 1.38779 * 120.12236 * 0.03880 * 19 18 17 23 23 C 1.38779 * 120.23441 * 359.95775 * 22 19 18 24 24 O 1.35906 * 119.94473 * 179.97438 * 23 22 19 25 25 C 1.42905 * 116.99611 * 0.02562 * 24 23 22 26 26 C 1.38450 * 120.12191 * 0.02562 * 23 22 19 27 27 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47512 * 300.00217 * 1 2 3 29 29 H 1.08997 * 109.46815 * 60.00500 * 1 2 3 30 30 H 1.08995 * 109.47512 * 239.99783 * 2 1 3 31 31 H 1.08997 * 109.46815 * 119.99500 * 2 1 3 32 32 H 1.09000 * 109.46823 * 29.99213 * 4 3 2 33 33 H 1.08998 * 109.47577 * 149.99779 * 4 3 2 34 34 H 0.97003 * 119.99863 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.99982 * 7.00075 * 15 13 3 36 36 H 1.08000 * 119.99786 * 191.30467 * 16 15 13 37 37 H 1.07995 * 120.06088 * 0.24987 * 18 17 16 38 38 H 1.08993 * 109.47061 * 299.99770 * 21 20 19 39 39 H 1.09004 * 109.47035 * 59.99915 * 21 20 19 40 40 H 1.08996 * 109.46725 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.88332 * 179.97438 * 22 19 18 42 42 H 1.09005 * 109.47000 * 300.00140 * 25 24 23 43 43 H 1.09003 * 109.47114 * 59.99792 * 25 24 23 44 44 H 1.09001 * 109.47206 * 180.02562 * 25 24 23 45 45 H 1.07996 * 120.05763 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4359 -3.9287 10 1 3.1158 4.8560 -3.5070 11 1 3.4069 3.3136 -5.3554 12 1 1.6137 2.9692 -3.7597 13 6 2.2429 2.0167 1.1671 14 8 2.6490 3.1639 1.1671 15 6 1.9993 1.3263 2.4353 16 6 2.0870 2.0022 3.5984 17 6 2.1794 3.4714 3.5908 18 6 3.0694 4.1227 4.4496 19 6 3.1485 5.5048 4.4421 20 8 4.0137 6.1392 5.2764 21 6 4.0434 7.5667 5.2169 22 6 2.3456 6.2437 3.5845 23 6 1.4604 5.6022 2.7297 24 8 0.6766 6.3316 1.8927 25 6 0.8172 7.7527 1.9462 26 6 1.3734 4.2204 2.7287 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1386 34 1 5.7178 2.5745 -4.0828 35 1 1.7492 0.2756 2.4388 36 1 2.0895 1.4658 4.5357 37 1 3.6941 3.5487 5.1179 38 1 4.3211 7.8827 4.2114 39 1 3.0574 7.9612 5.4624 40 1 4.7740 7.9449 5.9318 41 1 2.4102 7.3218 3.5822 42 1 0.5795 8.1038 2.9504 43 1 1.8431 8.0259 1.6992 44 1 0.1359 8.2125 1.2302 45 1 0.6839 3.7223 2.0634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492238601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:29 Heat of formation + Delta-G solvation = -44.071535 kcal Electronic energy + Delta-G solvation = -27379.489709 eV Core-core repulsion = 23557.514331 eV Total energy + Delta-G solvation = -3821.975378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39742 -39.23264 -38.64496 -36.78926 -35.21615 -33.18641 -32.53139 -30.32124 -30.10622 -29.41093 -28.03323 -27.46334 -26.51304 -23.98550 -22.93077 -22.26118 -21.93216 -20.27849 -18.73665 -17.44871 -16.86518 -16.85007 -16.63766 -15.93567 -15.85527 -15.68853 -15.40297 -15.29829 -14.63045 -14.36734 -13.96816 -13.77904 -13.41691 -13.27165 -13.05562 -12.71952 -12.48649 -12.37861 -12.13130 -12.10443 -11.85846 -11.70784 -11.51234 -11.37735 -11.14720 -11.03396 -10.91335 -10.85048 -10.49893 -10.39340 -10.12183 -9.49790 -9.37270 -9.00394 -8.54735 -8.01981 -7.74066 -7.36604 -6.04613 -4.02578 0.94524 1.80214 2.12761 3.29352 3.31650 3.37512 3.39871 3.43618 3.88864 4.03896 4.05931 4.43233 4.80192 4.95090 5.02369 5.04960 5.06032 5.13395 5.15628 5.28313 5.29234 5.34884 5.35665 5.41490 5.45971 5.55216 5.60483 5.62060 5.73057 5.89082 6.03639 6.19741 6.26888 6.33167 6.42156 6.46963 6.50518 6.75071 6.79599 6.87202 7.03775 7.30770 7.42862 7.66348 7.67915 8.33739 8.52016 8.98679 9.08276 9.56262 11.08955 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.004387 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.484354 B = 6381.038403 C = 7304.104425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.586 5.586 4 C 0.217 3.783 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.875 3.125 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.526 3.474 14 O -0.521 6.521 15 C -0.185 4.185 16 C -0.051 4.051 17 C 0.013 3.987 18 C -0.167 4.167 19 C 0.146 3.854 20 O -0.318 6.318 21 C 0.029 3.971 22 C -0.286 4.286 23 C 0.150 3.850 24 O -0.313 6.313 25 C 0.030 3.970 26 C -0.094 4.094 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.680 4.794 16.238 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.316 5.316 4 C 0.096 3.904 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.314 3.686 14 O -0.399 6.399 15 C -0.206 4.206 16 C -0.070 4.070 17 C 0.012 3.988 18 C -0.185 4.185 19 C 0.101 3.899 20 O -0.232 6.232 21 C -0.066 4.066 22 C -0.306 4.306 23 C 0.104 3.896 24 O -0.227 6.227 25 C -0.066 4.066 26 C -0.113 4.113 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.145 0.855 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.340 5.306 16.029 19.799 hybrid contribution -0.223 0.921 -0.878 1.292 sum -10.563 6.227 15.151 19.491 Atomic orbital electron populations 1.22242 0.96747 1.01492 1.02303 1.21478 0.93386 0.84004 1.03048 1.47919 1.63295 1.13301 1.07109 1.19626 0.97186 0.93426 0.80132 1.21340 0.95351 1.32681 1.06985 0.90785 1.24843 0.94945 0.95811 0.97370 1.69899 1.15132 1.45157 1.23563 0.86868 0.81564 0.81649 0.79722 1.20015 1.21133 1.19045 1.18278 0.79572 0.86582 0.84161 1.90886 1.45224 1.17103 1.86702 1.23386 1.03103 1.00927 0.93185 1.22185 0.95226 0.91879 0.97747 1.18284 0.94266 0.92473 0.93738 1.20244 1.03403 0.90939 1.03952 1.18414 0.89672 0.91713 0.90119 1.86050 1.58056 1.20763 1.58284 1.22988 1.02101 0.78962 1.02558 1.21169 1.04865 0.99959 1.04585 1.18451 0.90508 0.91060 0.89531 1.86102 1.59438 1.18891 1.58237 1.22987 1.02453 0.79183 1.01939 1.20205 1.02281 0.89952 0.98856 0.92076 0.92801 0.92335 0.89878 0.91198 0.95401 0.94536 0.92652 0.84901 0.84554 0.85319 0.92789 0.93039 0.88464 0.85461 0.93170 0.92831 0.88456 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.10 1.65 5.89 -4.04 -0.02 1.62 16 3 N -0.59 -12.17 2.46 -176.70 -0.43 -12.60 16 4 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 5 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 9 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 10 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 13 C 0.53 10.82 6.59 -12.96 -0.09 10.73 16 14 O -0.52 -12.70 11.70 5.19 0.06 -12.64 16 15 C -0.19 -2.81 9.13 -37.50 -0.34 -3.15 16 16 C -0.05 -0.70 9.81 -37.15 -0.36 -1.06 16 17 C 0.01 0.21 4.57 -105.10 -0.48 -0.27 16 18 C -0.17 -2.63 9.73 -38.93 -0.38 -3.01 16 19 C 0.15 2.29 6.68 -39.31 -0.26 2.03 16 20 O -0.32 -4.46 10.49 -19.45 -0.20 -4.66 16 21 C 0.03 0.28 9.81 101.05 0.99 1.27 16 22 C -0.29 -4.42 8.02 -39.18 -0.31 -4.73 16 23 C 0.15 2.60 6.68 -39.30 -0.26 2.34 16 24 O -0.31 -5.20 10.49 -19.44 -0.20 -5.40 16 25 C 0.03 0.34 9.81 101.05 0.99 1.33 16 26 C -0.09 -1.70 6.52 -38.93 -0.25 -1.95 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.07 0.92 6.02 -51.93 -0.31 0.61 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 35 H 0.13 1.56 6.15 -52.49 -0.32 1.23 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 39 H 0.05 0.42 7.65 -51.93 -0.40 0.03 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 1.60 4.49 -52.49 -0.24 1.37 16 42 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 43 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.12 2.32 6.90 -52.49 -0.36 1.96 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -36.74 369.84 -6.49 -43.23 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.52 Total: 1.46 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.87 Total: -4.91 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.34 Total: -40.05 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.35 Total: -22.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.74 -6.49 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492238601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.841 kcal (2) G-P(sol) polarization free energy of solvation -36.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds