Wall clock time and date at job start Tue Mar 31 2020 12:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.47009 * 2 1 4 4 C 1.46505 * 119.99939 * 269.99958 * 3 2 1 5 5 C 1.50699 * 109.46846 * 270.00379 * 4 3 2 6 6 H 1.08002 * 119.99783 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00249 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00257 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99744 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47719 * 89.99675 * 9 7 5 11 11 H 1.48500 * 109.47037 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.46996 * 329.99715 * 9 7 5 13 13 C 1.34768 * 120.00487 * 89.99329 * 3 2 1 14 14 O 1.21695 * 120.00660 * 179.97438 * 13 3 2 15 15 C 1.46438 * 119.99767 * 0.02562 * 13 3 2 16 16 C 1.34806 * 119.99843 * 187.00707 * 15 13 3 17 17 C 1.47220 * 120.00230 * 11.30286 * 16 15 13 18 18 C 1.39776 * 120.11808 * 222.27459 * 17 16 15 19 19 C 1.38439 * 119.88026 * 180.25511 * 18 17 16 20 20 O 1.35909 * 119.93963 * 180.02562 * 19 18 17 21 21 C 1.42904 * 116.99889 * 180.02562 * 20 19 18 22 22 C 1.38779 * 120.12236 * 0.03880 * 19 18 17 23 23 C 1.38779 * 120.23441 * 359.95775 * 22 19 18 24 24 O 1.35906 * 119.94473 * 179.97438 * 23 22 19 25 25 C 1.42905 * 116.99611 * 0.02562 * 24 23 22 26 26 C 1.38450 * 120.12191 * 0.02562 * 23 22 19 27 27 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47512 * 300.00217 * 1 2 3 29 29 H 1.08997 * 109.46815 * 60.00500 * 1 2 3 30 30 H 1.08995 * 109.47512 * 239.99783 * 2 1 3 31 31 H 1.08997 * 109.46815 * 119.99500 * 2 1 3 32 32 H 1.09000 * 109.46823 * 29.99213 * 4 3 2 33 33 H 1.08998 * 109.47577 * 149.99779 * 4 3 2 34 34 H 0.97003 * 119.99863 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.99982 * 7.00075 * 15 13 3 36 36 H 1.08000 * 119.99786 * 191.30467 * 16 15 13 37 37 H 1.07995 * 120.06088 * 0.24987 * 18 17 16 38 38 H 1.08993 * 109.47061 * 299.99770 * 21 20 19 39 39 H 1.09004 * 109.47035 * 59.99915 * 21 20 19 40 40 H 1.08996 * 109.46725 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.88332 * 179.97438 * 22 19 18 42 42 H 1.09005 * 109.47000 * 300.00140 * 25 24 23 43 43 H 1.09003 * 109.47114 * 59.99792 * 25 24 23 44 44 H 1.09001 * 109.47206 * 180.02562 * 25 24 23 45 45 H 1.07996 * 120.05763 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4359 -3.9287 10 1 3.1158 4.8560 -3.5070 11 1 3.4069 3.3136 -5.3554 12 1 1.6137 2.9692 -3.7597 13 6 2.2429 2.0167 1.1671 14 8 2.6490 3.1639 1.1671 15 6 1.9993 1.3263 2.4353 16 6 2.0870 2.0022 3.5984 17 6 2.1794 3.4714 3.5908 18 6 3.0694 4.1227 4.4496 19 6 3.1485 5.5048 4.4421 20 8 4.0137 6.1392 5.2764 21 6 4.0434 7.5667 5.2169 22 6 2.3456 6.2437 3.5845 23 6 1.4604 5.6022 2.7297 24 8 0.6766 6.3316 1.8927 25 6 0.8172 7.7527 1.9462 26 6 1.3734 4.2204 2.7287 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.5818 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1386 34 1 5.7178 2.5745 -4.0828 35 1 1.7492 0.2756 2.4388 36 1 2.0895 1.4658 4.5357 37 1 3.6941 3.5487 5.1179 38 1 4.3211 7.8827 4.2114 39 1 3.0574 7.9612 5.4624 40 1 4.7740 7.9449 5.9318 41 1 2.4102 7.3218 3.5822 42 1 0.5795 8.1038 2.9504 43 1 1.8431 8.0259 1.6992 44 1 0.1359 8.2125 1.2302 45 1 0.6839 3.7223 2.0634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492238601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:28 Heat of formation + Delta-G solvation = -69.252343 kcal Electronic energy + Delta-G solvation = -27380.581631 eV Core-core repulsion = 23557.514331 eV Total energy + Delta-G solvation = -3823.067300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58799 -40.69052 -39.74472 -38.03067 -36.74050 -34.92915 -34.19322 -31.84918 -31.26364 -30.67174 -29.45567 -28.71458 -27.47041 -25.56103 -24.30423 -23.63218 -23.24175 -21.64356 -19.97352 -19.14849 -18.77547 -18.06576 -17.86438 -17.17717 -16.94906 -16.89103 -16.83475 -16.39752 -16.25632 -15.67846 -15.38528 -15.17342 -14.83801 -14.60921 -14.38670 -14.13590 -13.84315 -13.69769 -13.46439 -13.34100 -13.17787 -13.10334 -12.82900 -12.54858 -12.47218 -12.36799 -12.22537 -12.14753 -12.04864 -11.98215 -11.75549 -11.56597 -10.85003 -10.56827 -10.49839 -9.39093 -9.17977 -8.70636 -8.35565 -6.39452 -0.25731 0.56559 0.92909 1.28310 1.32411 1.41066 2.28120 2.28366 2.35973 2.40892 2.58512 2.84849 2.98911 3.70019 3.84968 3.95403 4.07898 4.12369 4.21012 4.27671 4.29649 4.32177 4.33917 4.42829 4.44836 4.50863 4.60407 4.63019 4.67165 4.77701 4.79981 4.90712 5.02226 5.03146 5.12634 5.22683 5.27438 5.29831 5.41492 5.47807 5.59923 5.67016 5.75233 6.22430 6.25546 6.54548 6.61627 6.80909 7.21770 7.53926 8.81661 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.004387 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.484354 B = 6381.038403 C = 7304.104425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.597 5.597 4 C 0.230 3.770 5 C -0.531 4.531 6 H 0.028 0.972 7 C 0.013 3.987 8 N -0.945 5.945 9 Si 0.945 3.055 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.241 1.241 13 C 0.513 3.487 14 O -0.571 6.571 15 C -0.198 4.198 16 C -0.028 4.028 17 C -0.001 4.001 18 C -0.179 4.179 19 C 0.140 3.860 20 O -0.329 6.329 21 C 0.018 3.982 22 C -0.289 4.289 23 C 0.131 3.869 24 O -0.340 6.340 25 C 0.020 3.980 26 C -0.119 4.119 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.268 0.732 35 H 0.174 0.826 36 H 0.189 0.811 37 H 0.148 0.852 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.125 0.875 41 H 0.152 0.848 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.118 0.882 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 4.745 17.848 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.327 5.327 4 C 0.107 3.893 5 C -0.570 4.570 6 H 0.046 0.954 7 C -0.185 4.185 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.206 1.206 11 H -0.197 1.197 12 H -0.164 1.164 13 C 0.304 3.696 14 O -0.453 6.453 15 C -0.218 4.218 16 C -0.047 4.047 17 C -0.002 4.002 18 C -0.198 4.198 19 C 0.094 3.906 20 O -0.242 6.242 21 C -0.076 4.076 22 C -0.309 4.309 23 C 0.086 3.914 24 O -0.254 6.254 25 C -0.074 4.074 26 C -0.138 4.138 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.191 0.809 36 H 0.206 0.794 37 H 0.166 0.834 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.169 0.831 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.037 5.220 17.659 22.000 hybrid contribution 0.394 1.025 -1.272 1.680 sum -11.643 6.245 16.387 21.050 Atomic orbital electron populations 1.22155 0.94100 1.03553 1.01897 1.21803 0.95490 0.81289 1.03911 1.48033 1.63686 1.15159 1.05831 1.19195 0.94595 0.92761 0.82747 1.21565 0.97043 1.31823 1.06534 0.95351 1.25800 0.96630 0.97155 0.98935 1.70047 1.17328 1.46705 1.24503 0.85762 0.80531 0.78940 0.77998 1.20555 1.19668 1.16377 1.19244 0.78351 0.86284 0.85710 1.90860 1.47435 1.19404 1.87592 1.23362 1.05424 1.02505 0.90484 1.22719 0.92027 0.90615 0.99372 1.18657 0.94036 0.94129 0.93353 1.20555 1.03508 0.91522 1.04187 1.18632 0.89680 0.92128 0.90144 1.86040 1.57440 1.23058 1.57709 1.23333 1.04050 0.76781 1.03465 1.21388 1.04221 1.01274 1.03990 1.18712 0.91205 0.91316 0.90174 1.86060 1.59632 1.21306 1.58439 1.23309 1.03111 0.76884 1.04138 1.20254 1.03235 0.90716 0.99572 0.88669 0.92024 0.93956 0.91292 0.88115 0.93870 0.96889 0.92313 0.80893 0.79426 0.83408 0.92928 0.91402 0.85691 0.83060 0.90821 0.92949 0.86334 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.93 5.89 86.38 0.51 3.44 16 3 N -0.60 -25.09 2.46 -831.17 -2.04 -27.13 16 4 C 0.23 11.72 4.23 85.63 0.36 12.08 16 5 C -0.53 -32.37 9.94 25.60 0.25 -32.12 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.77 5.47 84.66 0.46 1.23 16 8 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 9 Si 0.94 46.31 27.47 68.60 1.88 48.19 16 10 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.24 -10.71 6.54 99.48 0.65 -10.06 16 13 C 0.51 21.40 6.59 86.38 0.57 21.97 16 14 O -0.57 -29.03 11.70 -4.33 -0.05 -29.08 16 15 C -0.20 -5.62 9.13 23.62 0.22 -5.40 16 16 C -0.03 -0.71 9.81 23.84 0.23 -0.48 16 17 C 0.00 -0.04 4.57 -20.17 -0.09 -0.14 16 18 C -0.18 -5.52 9.73 22.69 0.22 -5.30 16 19 C 0.14 4.30 6.68 22.45 0.15 4.45 16 20 O -0.33 -8.76 10.49 -92.52 -0.97 -9.73 16 21 C 0.02 0.31 9.81 113.37 1.11 1.42 16 22 C -0.29 -8.86 8.02 22.53 0.18 -8.68 16 23 C 0.13 4.68 6.68 22.45 0.15 4.83 16 24 O -0.34 -11.56 10.49 -92.49 -0.97 -12.53 16 25 C 0.02 0.44 9.81 113.37 1.11 1.55 16 26 C -0.12 -4.42 6.52 22.69 0.15 -4.27 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.10 2.38 6.02 -2.39 -0.01 2.36 16 32 H 0.04 2.05 7.13 -2.39 -0.02 2.04 16 33 H 0.01 0.72 6.85 -2.39 -0.02 0.71 16 34 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 35 H 0.17 3.38 6.15 -2.91 -0.02 3.37 16 36 H 0.19 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.05 0.93 7.65 -2.39 -0.02 0.91 16 39 H 0.07 0.96 7.65 -2.38 -0.02 0.94 16 40 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.15 3.65 4.49 -2.91 -0.01 3.63 16 42 H 0.07 1.26 7.65 -2.38 -0.02 1.24 16 43 H 0.05 1.16 7.65 -2.39 -0.02 1.14 16 44 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.10 4.14 6.90 -2.91 -0.02 4.12 16 Total: -1.00 -86.34 369.84 5.41 -80.93 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.94 Total: 18.77 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 6.32 Total: -8.37 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -1.74 Total: -88.19 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -1.99 Total: -51.34 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.88 Total: 48.19 kcal Total: -86.34 5.41 -80.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492238601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.680 kcal (2) G-P(sol) polarization free energy of solvation -86.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds