Wall clock time and date at job start Tue Mar 31 2020 12:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47022 * 2 1 4 4 C 1.46498 * 119.99999 * 90.00401 * 3 2 1 5 5 C 1.52999 * 109.46963 * 269.99688 * 4 3 2 6 6 C 1.52998 * 109.47370 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47353 * 180.02562 * 6 5 4 8 8 C 1.34775 * 119.99735 * 269.99592 * 3 2 1 9 9 O 1.21727 * 119.99352 * 180.02562 * 8 3 2 10 10 C 1.46253 * 120.00503 * 0.02562 * 8 3 2 11 11 C 1.35018 * 120.00214 * 173.22377 * 10 8 3 12 12 C 1.46960 * 119.99980 * 348.67712 * 11 10 8 13 13 C 1.40025 * 120.10008 * 316.39874 * 12 11 10 14 14 C 1.37597 * 119.89427 * 179.69816 * 13 12 11 15 15 C 1.39176 * 120.10558 * 0.59737 * 14 13 12 16 16 O 1.35568 * 119.90244 * 179.69628 * 15 14 13 17 17 C 1.34788 * 116.99919 * 174.33548 * 16 15 14 18 18 H 1.08001 * 119.99793 * 5.06203 * 17 16 15 19 19 C 1.38716 * 120.00042 * 185.06427 * 17 16 15 20 20 N 1.31506 * 119.99786 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47079 * 59.99960 * 21 19 17 23 23 H 1.48503 * 109.47091 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47148 * 299.99856 * 21 19 17 25 25 C 1.39185 * 120.19714 * 359.67823 * 15 14 13 26 26 C 1.37597 * 120.10194 * 0.02562 * 25 15 14 27 27 H 1.08998 * 109.47220 * 60.00035 * 1 2 3 28 28 H 1.08998 * 109.46820 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46904 * 299.99915 * 1 2 3 30 30 H 1.09000 * 109.47026 * 239.99544 * 2 1 3 31 31 H 1.09007 * 109.47162 * 120.00177 * 2 1 3 32 32 H 1.08999 * 109.47471 * 29.99847 * 4 3 2 33 33 H 1.08999 * 109.47124 * 149.99957 * 4 3 2 34 34 H 1.08999 * 109.47157 * 300.00352 * 5 4 3 35 35 H 1.08999 * 109.46981 * 60.00181 * 5 4 3 36 36 H 1.08999 * 109.47282 * 300.00292 * 6 5 4 37 37 H 1.09008 * 109.47000 * 59.99927 * 6 5 4 38 38 H 0.96704 * 114.00535 * 180.02562 * 7 6 5 39 39 H 1.08002 * 119.99686 * 353.21677 * 10 8 3 40 40 H 1.08005 * 119.99999 * 168.68522 * 11 10 8 41 41 H 1.08000 * 120.05039 * 359.97438 * 13 12 11 42 42 H 1.08001 * 119.95061 * 180.27410 * 14 13 12 43 43 H 0.97007 * 120.00362 * 180.02562 * 20 19 17 44 44 H 1.07997 * 119.94690 * 179.97438 * 25 15 14 45 45 H 1.08000 * 120.04846 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 0.9876 2.7930 1.7104 6 6 1.2424 3.5138 3.0357 7 8 0.0514 4.1869 3.4486 8 6 2.2430 2.0165 -1.1672 9 8 2.6492 3.1640 -1.1671 10 6 1.9988 1.3272 -2.4338 11 6 2.0915 2.0031 -3.5990 12 6 2.1896 3.4694 -3.5922 13 6 1.3678 4.2242 -2.7462 14 6 1.4675 5.5965 -2.7388 15 6 2.3746 6.2352 -3.5792 16 8 2.4650 7.5878 -3.5730 17 6 3.4412 8.1393 -4.3211 18 1 4.0548 7.5149 -4.9536 19 6 3.6577 9.5088 -4.2787 20 7 2.9109 10.2690 -3.5081 21 14 5.0101 10.2732 -5.3161 22 1 4.7497 9.9954 -6.7515 23 1 5.0352 11.7412 -5.0931 24 1 6.3201 9.6907 -4.9289 25 6 3.1894 5.4892 -4.4259 26 6 3.1009 4.1161 -4.4358 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.5507 1.3452 2.0284 33 1 3.0644 2.7985 1.1383 34 1 0.6995 3.5197 0.9508 35 1 0.1857 2.0664 1.8408 36 1 1.5302 2.7868 3.7952 37 1 2.0445 4.2404 2.9058 38 1 0.1400 4.6668 4.2834 39 1 1.7445 0.2776 -2.4371 40 1 2.0934 1.4661 -4.5361 41 1 0.6600 3.7298 -2.0975 42 1 0.8372 6.1794 -2.0834 43 1 3.0620 11.2267 -3.4787 44 1 3.8915 5.9890 -5.0768 45 1 3.7338 3.5381 -5.0929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492301900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:26 Heat of formation + Delta-G solvation = -58.421893 kcal Electronic energy + Delta-G solvation = -26673.252437 eV Core-core repulsion = 22850.654780 eV Total energy + Delta-G solvation = -3822.597657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.05006 -38.78836 -37.33980 -36.66490 -35.71559 -33.36086 -32.48492 -31.97702 -30.26032 -30.05564 -28.13186 -25.92921 -25.25569 -23.75879 -22.59157 -21.75363 -21.53687 -20.43269 -18.43312 -17.84982 -17.55210 -17.38231 -16.77229 -15.91085 -15.62511 -14.98310 -14.67394 -14.52372 -14.29855 -13.99801 -13.83119 -13.63202 -13.46984 -13.35229 -13.06590 -12.91714 -12.77569 -12.48003 -12.23685 -12.16340 -11.96856 -11.67085 -11.55853 -11.30714 -11.19573 -10.95737 -10.86166 -10.61561 -10.58976 -10.39025 -10.08642 -9.45781 -9.34909 -9.12957 -8.70130 -8.64476 -7.88100 -6.83018 -6.43061 -3.98970 1.26737 2.45063 2.72946 3.03594 3.15037 3.17763 3.19204 3.62393 3.99333 4.14943 4.60255 4.72497 4.78207 4.90197 5.02583 5.05169 5.11240 5.14212 5.18449 5.26785 5.31603 5.38894 5.48501 5.49448 5.54623 5.58134 5.68673 5.76603 5.88129 5.95156 6.06689 6.17818 6.27523 6.34478 6.45592 6.59572 6.66751 6.82719 7.06891 7.14979 7.39241 7.46832 7.47762 7.53519 7.56243 7.95523 8.03503 8.53074 9.02373 9.74783 10.74748 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.003240 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.407801 B = 8639.934553 C =10107.409353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 N -0.618 5.618 4 C 0.122 3.878 5 C -0.137 4.137 6 C 0.079 3.921 7 O -0.574 6.574 8 C 0.541 3.459 9 O -0.507 6.507 10 C -0.269 4.269 11 C 0.027 3.973 12 C -0.189 4.189 13 C 0.013 3.987 14 C -0.202 4.202 15 C 0.171 3.829 16 O -0.173 6.173 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.251 4.251 26 C -0.042 4.042 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.379 0.621 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.125 0.875 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -20.858 8.742 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 N -0.353 5.353 4 C -0.001 4.001 5 C -0.176 4.176 6 C 0.000 4.000 7 O -0.379 6.379 8 C 0.333 3.667 9 O -0.383 6.383 10 C -0.289 4.289 11 C 0.008 3.992 12 C -0.190 4.190 13 C -0.005 4.005 14 C -0.221 4.221 15 C 0.117 3.883 16 O -0.075 6.075 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.270 4.270 26 C -0.060 4.060 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.225 0.775 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.118 0.882 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.564 -20.040 8.359 21.864 hybrid contribution 0.896 0.373 0.144 0.981 sum -1.668 -19.667 8.503 21.491 Atomic orbital electron populations 1.22311 0.96075 1.01969 1.02972 1.21539 0.94416 0.82721 1.02830 1.47926 1.67454 1.14085 1.05811 1.21205 0.97323 0.96680 0.84898 1.21955 0.98774 1.00177 0.96653 1.22077 0.87112 0.95057 0.95711 1.86489 1.36317 1.70577 1.44533 1.18518 0.77946 0.86160 0.84045 1.90995 1.44309 1.16474 1.86545 1.22701 1.13676 1.00132 0.92436 1.22354 0.86851 0.93524 0.96509 1.18292 1.04686 0.91238 1.04817 1.20426 0.95421 0.92263 0.92433 1.20007 1.04245 0.93857 1.04015 1.19524 0.92416 0.84443 0.91957 1.83909 1.48509 1.14217 1.60884 1.21348 1.11231 0.91489 1.22592 0.88957 1.25319 0.98479 0.95223 0.97520 1.70017 1.37571 1.05749 1.36130 0.85773 0.79962 0.78171 0.79487 1.19452 1.20266 1.19456 1.20944 1.06243 0.93851 1.05957 1.20733 0.95835 0.93744 0.95697 0.92009 0.91846 0.92179 0.90114 0.90900 0.91054 0.89599 0.90433 0.91256 0.93936 0.93227 0.77458 0.85953 0.86135 0.88188 0.86879 0.91923 0.85687 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.11 0.85 5.93 -4.04 -0.02 0.83 16 3 N -0.62 -7.17 2.47 -175.39 -0.43 -7.60 16 4 C 0.12 1.34 5.45 -4.04 -0.02 1.32 16 5 C -0.14 -1.59 5.91 -26.73 -0.16 -1.75 16 6 C 0.08 0.81 7.05 37.16 0.26 1.07 16 7 O -0.57 -6.53 13.66 -35.23 -0.48 -7.01 16 8 C 0.54 8.19 6.64 -13.04 -0.09 8.11 16 9 O -0.51 -10.00 11.76 5.16 0.06 -9.94 16 10 C -0.27 -3.48 9.14 -37.51 -0.34 -3.82 16 11 C 0.03 0.39 9.80 -37.19 -0.36 0.02 16 12 C -0.19 -3.57 4.54 -105.03 -0.48 -4.04 16 13 C 0.01 0.27 6.59 -39.15 -0.26 0.01 16 14 C -0.20 -4.76 9.97 -39.47 -0.39 -5.15 16 15 C 0.17 4.44 6.66 -38.88 -0.26 4.18 16 16 O -0.17 -5.16 9.74 0.73 0.01 -5.15 16 17 C -0.39 -11.27 9.48 30.91 0.29 -10.98 16 18 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 20 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 21 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 C -0.25 -5.81 9.14 -39.46 -0.36 -6.17 16 26 C -0.04 -0.82 9.78 -39.15 -0.38 -1.21 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.50 6.26 -51.93 -0.33 0.17 16 30 H 0.08 0.56 6.02 -51.93 -0.31 0.25 16 31 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 32 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 33 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.76 6.26 -51.93 -0.33 0.43 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.38 2.48 9.12 45.56 0.42 2.90 16 39 H 0.12 1.16 6.15 -52.49 -0.32 0.84 16 40 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.10 1.91 7.02 -52.49 -0.37 1.54 16 42 H 0.11 2.63 8.06 -52.49 -0.42 2.20 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 2.86 5.62 -52.49 -0.29 2.56 16 45 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -35.65 372.02 -7.32 -42.97 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.53 Total: 7.77 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.29 Total: -17.53 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.32 Total: -32.63 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.41 Total: -22.10 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.65 -7.32 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492301900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.451 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds