Wall clock time and date at job start Tue Mar 31 2020 12:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46911 * 2 1 4 4 C 1.35833 * 117.00180 * 180.02562 * 3 2 1 5 5 C 1.38865 * 119.89967 * 359.97438 * 4 3 2 6 6 C 1.37746 * 120.17114 * 179.71854 * 5 4 3 7 7 C 1.39957 * 119.97745 * 0.55633 * 6 5 4 8 8 C 1.46994 * 120.09683 * 179.74512 * 7 6 5 9 9 C 1.34986 * 120.00020 * 317.04832 * 8 7 6 10 10 C 1.46247 * 119.99741 * 346.37033 * 9 8 7 11 11 O 1.21726 * 120.00273 * 353.72896 * 10 9 8 12 12 N 1.34779 * 119.99824 * 173.72975 * 10 9 8 13 13 C 1.46504 * 119.99992 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47128 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47099 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00130 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31507 * 119.99665 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47316 * 59.99908 * 19 17 15 21 21 H 1.48503 * 109.46740 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47191 * 299.99837 * 19 17 15 23 23 C 1.39959 * 119.80498 * 359.46431 * 7 6 5 24 24 C 1.38095 * 119.82997 * 0.25656 * 23 7 6 25 25 O 1.36000 * 119.99032 * 179.97438 * 24 23 7 26 26 C 1.42903 * 117.00042 * 0.02562 * 25 24 23 27 27 H 1.09006 * 109.47104 * 300.00017 * 1 2 3 28 28 H 1.08995 * 109.47047 * 59.99535 * 1 2 3 29 29 H 1.08993 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46873 * 240.00448 * 2 1 3 31 31 H 1.08999 * 109.47536 * 119.99910 * 2 1 3 32 32 H 1.08000 * 119.90924 * 0.02562 * 5 4 3 33 33 H 1.07997 * 120.01172 * 180.29939 * 6 5 4 34 34 H 1.08000 * 119.99898 * 137.05070 * 8 7 6 35 35 H 1.08000 * 119.99731 * 166.64091 * 9 8 7 36 36 H 0.96990 * 120.00058 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46978 * 300.00231 * 13 12 10 38 38 H 1.08998 * 109.47037 * 59.99846 * 13 12 10 39 39 H 1.09003 * 109.47163 * 299.99853 * 14 13 12 40 40 H 1.08998 * 109.47504 * 59.99866 * 14 13 12 41 41 H 0.97004 * 119.99659 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.08567 * 180.27176 * 23 7 6 43 43 H 1.09002 * 109.46594 * 299.99605 * 26 25 24 44 44 H 1.08996 * 109.47515 * 59.99336 * 26 25 24 45 45 H 1.09000 * 109.47231 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3529 1.5254 -0.0005 5 6 4.1970 0.4227 -0.0005 6 6 5.5634 0.5968 -0.0069 7 6 6.1039 1.8877 -0.0017 8 6 7.5616 2.0765 -0.0028 9 6 8.3420 1.3110 0.7891 10 6 7.7401 0.5114 1.8555 11 8 6.5536 0.6222 2.1037 12 7 8.4993 -0.3482 2.5636 13 6 7.8965 -1.1488 3.6322 14 6 8.9676 -2.0342 4.2722 15 6 8.3474 -2.8582 5.3710 16 1 7.2947 -2.7599 5.5912 17 6 9.1242 -3.7369 6.0960 18 7 10.4062 -3.8563 5.8282 19 14 8.3556 -4.7577 7.4586 20 1 7.2817 -5.6122 6.8913 21 1 9.3953 -5.6172 8.0796 22 1 7.7788 -3.8558 8.4876 23 6 5.2523 2.9985 -0.0013 24 6 3.8836 2.8147 -0.0007 25 8 3.0531 3.8917 0.0002 26 6 3.6653 5.1830 -0.0001 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.7809 -0.5740 -0.0005 33 1 6.2174 -0.2626 -0.0118 34 1 8.0083 2.8278 -0.6373 35 1 9.4112 1.2924 0.6379 36 1 9.4446 -0.4368 2.3656 37 1 7.4738 -0.4867 4.3879 38 1 7.1077 -1.7754 3.2160 39 1 9.3906 -2.6963 3.5167 40 1 9.7561 -1.4074 4.6885 41 1 10.9528 -4.4742 6.3385 42 1 5.6645 3.9967 -0.0017 43 1 4.2859 5.2910 0.8895 44 1 4.2845 5.2914 -0.8905 45 1 2.8923 5.9515 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492496419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:04 Heat of formation + Delta-G solvation = -91.367372 kcal Electronic energy + Delta-G solvation = -26057.536373 eV Core-core repulsion = 22233.510093 eV Total energy + Delta-G solvation = -3824.026280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59633 -40.63116 -39.49979 -38.08422 -36.48811 -34.78404 -34.36403 -32.61828 -31.65605 -31.25935 -29.81988 -27.98196 -26.92892 -24.95030 -24.62421 -23.09358 -22.43388 -22.24432 -20.52572 -19.53326 -18.65956 -18.30436 -17.72075 -17.27347 -17.22133 -16.61518 -16.46234 -16.37298 -16.30563 -15.75451 -15.45154 -15.12701 -14.72878 -14.65156 -14.30516 -14.22486 -14.01973 -13.89791 -13.35998 -13.22766 -13.06038 -12.92378 -12.90418 -12.79685 -12.54969 -12.24267 -12.18990 -11.98519 -11.94914 -11.72260 -11.62544 -11.46919 -10.70654 -10.61131 -10.42517 -9.97850 -9.51700 -8.46869 -8.25374 -6.36012 -0.23196 0.42935 0.92524 1.40250 1.42428 1.50536 2.24281 2.33424 2.38844 2.41591 2.54666 2.82374 3.09118 3.73591 3.79977 4.01324 4.01620 4.02909 4.16889 4.27065 4.31180 4.36258 4.42987 4.44905 4.49425 4.52079 4.61138 4.65544 4.74556 4.84541 4.85441 4.91136 4.98355 5.12979 5.20742 5.30151 5.32708 5.37473 5.52105 5.57837 5.67420 5.71043 5.79335 6.13974 6.15688 6.64088 6.74644 6.77731 7.33298 7.40523 8.86204 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013191 B = 0.002732 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.138074 B =10245.402154 C =11723.854220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 O -0.325 6.325 4 C 0.089 3.911 5 C -0.191 4.191 6 C -0.047 4.047 7 C -0.078 4.078 8 C -0.013 4.013 9 C -0.212 4.212 10 C 0.521 3.479 11 O -0.573 6.573 12 N -0.715 5.715 13 C 0.145 3.855 14 C 0.024 3.976 15 C -0.549 4.549 16 H 0.056 0.944 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.963 3.037 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.149 4.149 24 C 0.067 3.933 25 O -0.333 6.333 26 C 0.018 3.982 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.181 0.819 35 H 0.170 0.830 36 H 0.410 0.590 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.009 0.991 40 H 0.007 0.993 41 H 0.266 0.734 42 H 0.162 0.838 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 15.241 -17.654 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.240 6.240 4 C 0.044 3.956 5 C -0.209 4.209 6 C -0.066 4.066 7 C -0.078 4.078 8 C -0.032 4.032 9 C -0.232 4.232 10 C 0.312 3.688 11 O -0.455 6.455 12 N -0.365 5.365 13 C 0.020 3.980 14 C -0.013 4.013 15 C -0.588 4.588 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.168 4.168 24 C 0.022 3.978 25 O -0.248 6.248 26 C -0.076 4.076 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.198 0.802 35 H 0.187 0.813 36 H 0.245 0.755 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.075 0.925 42 H 0.180 0.820 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.530 15.348 -17.398 25.907 hybrid contribution 0.582 -1.063 1.063 1.612 sum -10.948 14.285 -16.334 24.305 Atomic orbital electron populations 1.21775 0.91051 1.04136 1.03222 1.23040 0.97237 0.81083 1.01743 1.86063 1.18308 1.30677 1.88944 1.18579 0.83199 0.91801 1.02048 1.21009 0.94106 0.97666 1.08168 1.20880 0.93973 0.96513 0.95238 1.18881 0.94209 0.92355 1.02359 1.22664 0.90292 0.95126 0.95137 1.23174 1.02353 1.00649 0.97068 1.19219 0.86306 0.79768 0.83517 1.90874 1.16634 1.67942 1.70075 1.46151 1.13603 1.41061 1.35721 1.21119 0.96340 0.92408 0.88083 1.19113 0.93670 0.93712 0.94844 1.21449 0.95887 1.23316 1.18121 0.92530 1.25859 0.95292 0.98074 0.99844 1.70045 1.06575 1.37784 1.42122 0.85525 0.78208 0.78547 0.78946 1.19324 1.20430 1.19421 1.21319 0.90255 1.00351 1.04828 1.18224 0.89555 0.85431 1.04595 1.86114 1.34851 1.14177 1.89641 1.23326 1.00884 0.81257 1.02154 0.92165 0.91357 0.88153 0.91014 0.92505 0.84377 0.87096 0.80211 0.81294 0.75465 0.94151 0.93827 0.97306 0.97436 0.92486 0.82022 0.92389 0.91093 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.04 0.95 5.46 71.98 0.39 1.34 16 3 O -0.33 -9.60 9.91 -77.64 -0.77 -10.37 16 4 C 0.09 2.75 6.71 22.71 0.15 2.90 16 5 C -0.19 -5.67 9.01 22.30 0.20 -5.47 16 6 C -0.05 -1.41 6.68 22.57 0.15 -1.26 16 7 C -0.08 -2.00 4.50 -20.15 -0.09 -2.10 16 8 C -0.01 -0.25 9.80 23.82 0.23 -0.01 16 9 C -0.21 -4.57 9.87 23.60 0.23 -4.34 16 10 C 0.52 16.98 6.77 86.32 0.58 17.56 16 11 O -0.57 -22.86 12.37 -4.43 -0.05 -22.91 16 12 N -0.72 -24.58 5.55 -467.50 -2.60 -27.18 16 13 C 0.14 6.29 5.61 86.38 0.48 6.78 16 14 C 0.02 1.22 5.09 29.85 0.15 1.37 16 15 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 17 C 0.01 0.46 5.46 84.66 0.46 0.93 16 18 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 19 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.15 -3.62 8.78 22.65 0.20 -3.42 16 24 C 0.07 1.92 6.69 22.52 0.15 2.07 16 25 O -0.33 -8.86 10.27 -79.53 -0.82 -9.68 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.35 7.65 -2.39 -0.02 1.34 16 31 H 0.06 1.28 7.65 -2.39 -0.02 1.26 16 32 H 0.14 3.66 6.27 -2.91 -0.02 3.64 16 33 H 0.11 3.37 7.08 -2.91 -0.02 3.35 16 34 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.41 11.91 8.45 -92.72 -0.78 11.12 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.16 2.75 6.28 -2.91 -0.02 2.73 16 43 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 44 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 45 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.44 377.87 3.68 -71.76 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.21 Total: 21.34 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 5.39 Total: -14.66 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.31 Total: -81.34 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.64 Total: -42.96 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -75.44 3.68 -71.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492496419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.606 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds