Wall clock time and date at job start Tue Mar 31 2020 12:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.46938 * 2 1 4 4 C 1.42898 * 113.99639 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46944 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46737 * 175.00405 * 5 4 3 7 7 C 1.52994 * 109.47247 * 54.99755 * 5 4 3 8 8 N 1.46502 * 109.46920 * 294.99739 * 5 4 3 9 9 C 1.34779 * 120.00004 * 204.99828 * 8 5 4 10 10 O 1.21718 * 119.99908 * 0.02562 * 9 8 5 11 11 C 1.46255 * 119.99865 * 179.97438 * 9 8 5 12 12 C 1.35018 * 120.00031 * 179.97438 * 11 9 8 13 13 C 1.46960 * 120.00380 * 180.02562 * 12 11 9 14 14 C 1.40026 * 120.10267 * 180.02562 * 13 12 11 15 15 C 1.37594 * 119.89660 * 179.97438 * 14 13 12 16 16 C 1.39178 * 120.10071 * 0.27233 * 15 14 13 17 17 O 1.35579 * 119.89553 * 179.70771 * 16 15 14 18 18 C 1.34781 * 117.00320 * 354.44312 * 17 16 15 19 19 H 1.08005 * 119.99725 * 5.05569 * 18 17 16 20 20 C 1.38715 * 120.00342 * 185.05925 * 18 17 16 21 21 N 1.31515 * 119.99717 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.46917 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47200 * 119.99800 * 22 20 18 25 25 H 1.48498 * 109.46657 * 239.99839 * 22 20 18 26 26 C 1.39173 * 120.20477 * 359.44770 * 16 15 14 27 27 C 1.37597 * 120.09926 * 0.55723 * 26 16 15 28 28 H 1.09008 * 109.47057 * 59.99586 * 1 2 3 29 29 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47124 * 300.00216 * 1 2 3 31 31 H 1.09007 * 109.46939 * 240.00499 * 2 1 3 32 32 H 1.08995 * 109.47218 * 120.00331 * 2 1 3 33 33 H 1.08996 * 109.47383 * 60.00368 * 4 3 2 34 34 H 1.08996 * 109.47392 * 300.00418 * 4 3 2 35 35 H 1.08997 * 109.47359 * 300.00143 * 7 5 4 36 36 H 1.09005 * 109.46948 * 60.00449 * 7 5 4 37 37 H 1.09003 * 109.47065 * 180.02562 * 7 5 4 38 38 H 0.97004 * 120.00347 * 25.00647 * 8 5 4 39 39 H 1.08003 * 120.00046 * 0.02562 * 11 9 8 40 40 H 1.08003 * 119.99920 * 0.02562 * 12 11 9 41 41 H 1.08002 * 120.05214 * 359.95709 * 14 13 12 42 42 H 1.08001 * 119.95149 * 180.02562 * 15 14 13 43 43 H 0.96993 * 119.99812 * 180.02562 * 21 20 18 44 44 H 1.08004 * 119.95204 * 180.27325 * 26 16 15 45 45 H 1.08000 * 120.05069 * 179.74232 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 1 4.9082 3.0254 0.0892 7 6 3.1580 3.6438 1.1824 8 7 3.3867 3.5615 -1.2512 9 6 4.0181 4.6579 -1.7155 10 8 4.9530 5.1303 -1.0955 11 6 3.5805 5.2796 -2.9650 12 6 4.2127 6.3783 -3.4300 13 6 3.7727 7.0033 -4.6852 14 6 4.4271 8.1425 -5.1695 15 6 4.0120 8.7240 -6.3455 16 6 2.9399 8.1848 -7.0503 17 8 2.5306 8.7646 -8.2055 18 6 3.1271 9.9217 -8.5543 19 1 3.9494 10.3037 -7.9675 20 6 2.6849 10.6222 -9.6670 21 7 1.6839 10.1568 -10.3819 22 14 3.5122 12.2256 -10.1509 23 1 4.6043 12.5283 -9.1913 24 1 4.0757 12.0987 -11.5189 25 1 2.5138 13.3246 -10.1266 26 6 2.2901 7.0492 -6.5758 27 6 2.6982 6.4611 -5.4007 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8332 0.9768 -0.8908 34 1 3.8340 0.9764 0.8891 35 1 2.0751 3.5568 1.0933 36 1 3.4844 3.1803 2.1134 37 1 3.4387 4.6971 1.1826 38 1 2.6418 3.1849 -1.7455 39 1 2.7513 4.8602 -3.5154 40 1 5.0417 6.7979 -2.8794 41 1 5.2563 8.5644 -4.6208 42 1 4.5164 9.6024 -6.7201 43 1 1.3750 10.6464 -11.1601 44 1 1.4613 6.6317 -7.1283 45 1 2.1907 5.5823 -5.0310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492687609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:46 Heat of formation + Delta-G solvation = -81.430967 kcal Electronic energy + Delta-G solvation = -24919.726289 eV Core-core repulsion = 21096.130884 eV Total energy + Delta-G solvation = -3823.595405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.82571 -39.15252 -38.40876 -36.88946 -35.41202 -33.18808 -32.33048 -31.89012 -30.62975 -30.40290 -28.08785 -26.71183 -25.67315 -23.62758 -23.20049 -22.19676 -21.37626 -20.51625 -19.32401 -18.15994 -17.34303 -17.08422 -16.96905 -16.58733 -15.79384 -15.09369 -14.81965 -14.74288 -14.46720 -14.39377 -14.03214 -13.83534 -13.74588 -13.48781 -13.14719 -13.02155 -12.72690 -12.57731 -12.56916 -12.11996 -11.92245 -11.75777 -11.73812 -11.68151 -11.41127 -11.21490 -11.13654 -11.04780 -10.64483 -10.52170 -10.03798 -9.72740 -9.58193 -9.48068 -9.10592 -8.83615 -8.36623 -7.09525 -6.64198 -4.19036 1.10370 2.15031 2.58366 3.04225 3.05516 3.11201 3.15827 3.33425 3.63134 3.83088 4.46024 4.52662 4.62497 4.72856 4.82856 4.93413 4.95293 4.98225 5.05383 5.06611 5.13765 5.29252 5.30738 5.35123 5.50898 5.54277 5.56248 5.66800 5.69210 5.73124 5.82036 6.03060 6.13087 6.14299 6.42804 6.49667 6.53391 6.63675 6.77158 6.81057 6.93824 7.14872 7.25380 7.30104 7.63477 7.65590 7.81453 8.39884 8.80820 9.48083 10.52617 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.001864 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.539472 B =15018.217523 C =15942.929425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.384 6.384 4 C 0.054 3.946 5 C 0.148 3.852 6 H 0.098 0.902 7 C -0.159 4.159 8 N -0.725 5.725 9 C 0.556 3.444 10 O -0.561 6.561 11 C -0.281 4.281 12 C 0.037 3.963 13 C -0.198 4.198 14 C -0.035 4.035 15 C -0.242 4.242 16 C 0.167 3.833 17 O -0.163 6.163 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.852 5.852 22 Si 0.945 3.055 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.200 4.200 27 C -0.043 4.043 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.404 0.596 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.131 0.869 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -16.716 17.978 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.304 6.304 4 C -0.023 4.023 5 C 0.043 3.957 6 H 0.116 0.884 7 C -0.217 4.217 8 N -0.377 5.377 9 C 0.348 3.652 10 O -0.442 6.442 11 C -0.302 4.302 12 C 0.017 3.983 13 C -0.199 4.199 14 C -0.054 4.054 15 C -0.261 4.261 16 C 0.110 3.890 17 O -0.064 6.064 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.485 5.485 22 Si 0.769 3.231 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.219 4.219 27 C -0.061 4.061 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.238 0.762 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.018 -16.219 18.009 24.257 hybrid contribution 0.170 0.295 -0.500 0.605 sum 1.188 -15.925 17.509 23.697 Atomic orbital electron populations 1.21745 0.93607 1.02267 1.03312 1.22467 0.95718 0.83701 1.00044 1.87906 1.20618 1.26444 1.95420 1.22823 0.81955 0.96477 1.01072 1.20945 0.99974 0.89790 0.85021 0.88428 1.22071 1.01778 1.01087 0.96765 1.45882 1.36776 1.30186 1.24869 1.18427 0.81752 0.79597 0.85399 1.90762 1.29619 1.63430 1.60416 1.22447 1.06685 1.02241 0.98830 1.22277 0.93901 0.90831 0.91310 1.18471 1.02560 1.00867 0.97977 1.20990 0.96798 0.93230 0.94367 1.21103 1.01724 1.04829 0.98486 1.19616 0.91611 0.91932 0.85793 1.83906 1.56327 1.35144 1.31051 1.21523 1.16074 0.96971 1.12243 0.88494 1.25398 0.96249 0.99548 0.95323 1.70024 1.23880 1.38459 1.16164 0.85579 0.78936 0.79607 0.78972 1.18864 1.19934 1.19924 1.20151 1.04154 0.98593 0.98984 1.20887 0.94541 0.97504 0.93200 0.91664 0.91152 0.91842 0.93360 0.93476 0.92561 0.91954 0.91538 0.92169 0.92057 0.76164 0.85928 0.85953 0.86817 0.85123 0.91670 0.86139 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.35 6.66 37.16 0.25 0.60 16 3 O -0.38 -3.15 9.19 -35.23 -0.32 -3.47 16 4 C 0.05 0.39 5.68 37.16 0.21 0.60 16 5 C 0.15 1.42 2.98 -67.93 -0.20 1.22 16 6 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 7 C -0.16 -1.53 9.29 37.15 0.35 -1.19 16 8 N -0.73 -7.97 5.06 -55.25 -0.28 -8.25 16 9 C 0.56 7.94 7.70 -13.04 -0.10 7.84 16 10 O -0.56 -9.79 15.89 5.17 0.08 -9.71 16 11 C -0.28 -3.93 9.41 -37.51 -0.35 -4.29 16 12 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 13 C -0.20 -3.42 5.87 -105.03 -0.62 -4.03 16 14 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 15 C -0.24 -5.05 9.14 -39.47 -0.36 -5.41 16 16 C 0.17 3.86 6.66 -38.89 -0.26 3.60 16 17 O -0.16 -4.45 9.74 0.71 0.01 -4.45 16 18 C -0.39 -10.48 9.48 30.91 0.29 -10.19 16 19 H 0.10 2.38 5.18 -52.48 -0.27 2.11 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.85 -23.95 13.67 55.48 0.76 -23.19 16 22 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 26 C -0.20 -4.03 9.97 -39.47 -0.39 -4.42 16 27 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 28 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 3.80 8.36 -40.82 -0.34 3.46 16 39 H 0.12 1.50 6.07 -52.48 -0.32 1.18 16 40 H 0.12 1.88 7.52 -52.48 -0.39 1.49 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.13 2.70 5.62 -52.49 -0.29 2.41 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 45 H 0.12 1.67 6.16 -52.49 -0.32 1.35 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -31.03 383.42 -7.52 -38.55 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.52 Total: 7.21 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.01 Total: -17.07 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.48 Total: -31.44 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.23 Total: -17.62 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.03 -7.52 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492687609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.879 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds