Wall clock time and date at job start Tue Mar 31 2020 12:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42892 * 109.47255 * 2 1 4 4 C 1.42902 * 114.00105 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47183 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47259 * 175.00236 * 5 4 3 7 7 C 1.53002 * 109.47274 * 55.00361 * 5 4 3 8 8 N 1.46502 * 109.47432 * 295.00071 * 5 4 3 9 9 C 1.34770 * 120.00399 * 205.00012 * 8 5 4 10 10 O 1.21723 * 119.99910 * 0.02562 * 9 8 5 11 11 C 1.46253 * 120.00084 * 179.97438 * 9 8 5 12 12 C 1.35029 * 119.99874 * 173.21368 * 11 9 8 13 13 C 1.46961 * 119.99975 * 348.68782 * 12 11 9 14 14 C 1.40017 * 120.09850 * 316.40351 * 13 12 11 15 15 C 1.37603 * 119.89569 * 179.70004 * 14 13 12 16 16 C 1.39180 * 120.09861 * 0.59462 * 15 14 13 17 17 O 1.35571 * 119.89806 * 179.69491 * 16 15 14 18 18 C 1.34780 * 116.99830 * 174.33912 * 17 16 15 19 19 H 1.07999 * 119.99906 * 5.06335 * 18 17 16 20 20 C 1.38715 * 120.00032 * 185.06505 * 18 17 16 21 21 N 1.31513 * 120.00025 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00250 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47316 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47239 * 119.99828 * 22 20 18 25 25 H 1.48502 * 109.47491 * 239.99839 * 22 20 18 26 26 C 1.39174 * 120.20148 * 359.68257 * 16 15 14 27 27 C 1.37594 * 120.10453 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47300 * 300.00204 * 1 2 3 30 30 H 1.09008 * 109.46909 * 59.99823 * 1 2 3 31 31 H 1.08994 * 109.47099 * 240.00031 * 2 1 3 32 32 H 1.09003 * 109.46618 * 120.00515 * 2 1 3 33 33 H 1.08997 * 109.46805 * 60.00337 * 4 3 2 34 34 H 1.08996 * 109.47336 * 299.99941 * 4 3 2 35 35 H 1.09002 * 109.46875 * 300.00110 * 7 5 4 36 36 H 1.08999 * 109.46838 * 59.99878 * 7 5 4 37 37 H 1.08997 * 109.47338 * 179.97438 * 7 5 4 38 38 H 0.97002 * 119.99265 * 25.00067 * 8 5 4 39 39 H 1.07996 * 119.99909 * 353.21777 * 11 9 8 40 40 H 1.07995 * 119.99635 * 168.68592 * 12 11 9 41 41 H 1.07998 * 120.05302 * 359.97438 * 14 13 12 42 42 H 1.08002 * 119.95434 * 180.27361 * 15 14 13 43 43 H 0.97000 * 120.00168 * 179.97438 * 21 20 18 44 44 H 1.08003 * 119.94642 * 180.02562 * 26 16 15 45 45 H 1.08003 * 120.05143 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 1 4.9083 3.0253 0.0911 7 6 3.1572 3.6440 1.1828 8 7 3.3879 3.5611 -1.2506 9 6 4.0196 4.6573 -1.7147 10 8 4.9541 5.1298 -1.0941 11 6 3.5831 5.2787 -2.9647 12 6 4.1226 6.4517 -3.3599 13 6 4.9560 7.2273 -2.4307 14 6 4.5579 7.3891 -1.0981 15 6 5.3445 8.1109 -0.2300 16 6 6.5281 8.6903 -0.6779 17 8 7.2969 9.4058 0.1793 18 6 8.4857 9.8415 -0.2829 19 1 8.7519 9.6873 -1.3181 20 6 9.3672 10.4879 0.5711 21 7 9.0427 10.6762 1.8316 22 14 11.0150 11.0911 -0.0692 23 1 11.1373 10.7591 -1.5114 24 1 11.1068 12.5626 0.1090 25 1 12.1108 10.4318 0.6857 26 6 6.9249 8.5370 -2.0031 27 6 6.1477 7.8118 -2.8768 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9766 0.8908 35 1 2.0744 3.5570 1.0928 36 1 3.4828 3.1807 2.1141 37 1 3.4386 4.6971 1.1835 38 1 2.6434 3.1843 -1.7453 39 1 2.8292 4.7993 -3.5715 40 1 3.9417 6.8198 -4.3590 41 1 3.6370 6.9442 -0.7510 42 1 5.0405 8.2325 0.7992 43 1 9.6592 11.1279 2.4289 44 1 7.8443 8.9880 -2.3462 45 1 6.4567 7.6931 -3.9048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492687610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:49 Heat of formation + Delta-G solvation = -62.660822 kcal Electronic energy + Delta-G solvation = -26095.611129 eV Core-core repulsion = 22272.829659 eV Total energy + Delta-G solvation = -3822.781470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.86714 -38.84904 -38.29616 -36.53962 -35.14344 -32.99827 -32.16017 -31.80329 -30.49956 -30.07488 -27.86143 -26.57257 -25.41066 -23.53793 -23.16113 -21.78510 -21.30361 -20.51755 -19.25100 -17.89559 -17.25945 -17.09490 -16.58913 -16.46298 -15.69868 -14.93670 -14.65177 -14.47576 -14.39545 -14.09914 -13.87087 -13.71100 -13.42153 -13.25618 -13.01681 -12.96146 -12.65719 -12.60972 -12.25032 -12.14600 -11.97474 -11.68860 -11.65599 -11.31888 -11.30223 -11.04215 -10.97888 -10.64674 -10.56085 -10.37635 -9.96092 -9.43483 -9.35522 -9.11538 -8.90209 -8.65875 -7.87684 -6.81781 -6.42849 -3.98494 1.30244 2.46638 2.74772 3.15451 3.16826 3.21848 3.26303 3.44715 3.72015 3.99601 4.58594 4.65835 4.73775 4.81923 4.90992 4.98878 5.09450 5.12995 5.18356 5.23064 5.28523 5.39800 5.42239 5.47678 5.53931 5.65504 5.73941 5.76838 5.77898 5.89360 6.01623 6.28706 6.33033 6.38690 6.49539 6.64434 6.65239 6.83125 6.85556 7.08035 7.16447 7.40870 7.49928 7.54352 7.78884 7.96641 8.04219 8.63000 9.03022 9.75638 10.75189 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.002462 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.996000 B =11368.470360 C =12125.745330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.384 6.384 4 C 0.055 3.945 5 C 0.149 3.851 6 H 0.099 0.901 7 C -0.158 4.158 8 N -0.728 5.728 9 C 0.539 3.461 10 O -0.513 6.513 11 C -0.265 4.265 12 C 0.025 3.975 13 C -0.188 4.188 14 C 0.013 3.987 15 C -0.202 4.202 16 C 0.171 3.829 17 O -0.174 6.174 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.506 -19.081 -7.111 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.304 6.304 4 C -0.022 4.022 5 C 0.044 3.956 6 H 0.117 0.883 7 C -0.217 4.217 8 N -0.381 5.381 9 C 0.328 3.672 10 O -0.390 6.390 11 C -0.286 4.286 12 C 0.006 3.994 13 C -0.189 4.189 14 C -0.005 4.005 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.111 0.889 20 C -0.167 4.167 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.061 4.061 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.232 0.768 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.850 -18.397 -6.185 23.844 hybrid contribution 0.622 -0.369 -0.600 0.940 sum -13.227 -18.766 -6.785 23.941 Atomic orbital electron populations 1.21741 0.93719 1.02168 1.03228 1.22452 0.95616 0.83897 1.00013 1.87901 1.20831 1.26238 1.95413 1.22838 0.81677 0.96767 1.00961 1.20926 1.00201 0.89473 0.85042 0.88272 1.22065 1.01365 1.01469 0.96785 1.45996 1.36594 1.30728 1.24825 1.18508 0.82970 0.80147 0.85527 1.90992 1.28098 1.61234 1.58629 1.22611 1.07044 0.99470 0.99513 1.22325 0.89344 0.91111 0.96645 1.18290 0.98859 1.07436 0.94282 1.20439 0.96937 0.91972 0.91174 1.20005 0.96261 1.06015 0.99890 1.19526 0.90764 0.88781 0.89294 1.83907 1.28113 1.58321 1.37291 1.21437 0.91227 1.37056 0.96763 0.88861 1.25326 0.99397 0.96899 0.95038 1.70036 1.36365 1.39167 1.03934 0.85631 0.80229 0.78531 0.78945 1.19054 1.20152 1.20139 1.20947 1.03525 1.08512 0.94024 1.20739 0.93276 0.94308 0.97755 0.91227 0.91799 0.91822 0.93504 0.93453 0.92743 0.91971 0.91798 0.92199 0.91754 0.76767 0.86242 0.86158 0.88082 0.86884 0.92050 0.85691 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.38 -3.43 9.19 -35.23 -0.32 -3.75 16 4 C 0.05 0.47 5.68 37.16 0.21 0.68 16 5 C 0.15 1.68 2.98 -67.93 -0.20 1.48 16 6 H 0.10 1.29 7.58 -51.93 -0.39 0.90 16 7 C -0.16 -1.87 9.29 37.16 0.35 -1.53 16 8 N -0.73 -8.52 5.05 -55.25 -0.28 -8.80 16 9 C 0.54 8.10 6.74 -13.04 -0.09 8.01 16 10 O -0.51 -10.02 11.84 5.17 0.06 -9.96 16 11 C -0.27 -3.45 9.90 -37.50 -0.37 -3.82 16 12 C 0.03 0.37 9.80 -37.19 -0.36 0.00 16 13 C -0.19 -3.53 4.54 -105.03 -0.48 -4.01 16 14 C 0.01 0.27 6.59 -39.15 -0.26 0.01 16 15 C -0.20 -4.72 9.97 -39.46 -0.39 -5.12 16 16 C 0.17 4.41 6.66 -38.88 -0.26 4.16 16 17 O -0.17 -5.17 9.74 0.74 0.01 -5.16 16 18 C -0.39 -11.20 9.48 30.91 0.29 -10.91 16 19 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 22 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.25 -5.81 9.14 -39.47 -0.36 -6.17 16 27 C -0.04 -0.84 9.78 -39.15 -0.38 -1.22 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.74 7.56 -51.93 -0.39 0.34 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 3.79 8.36 -40.82 -0.34 3.45 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.10 1.89 7.02 -52.49 -0.37 1.53 16 42 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.13 2.87 5.62 -52.48 -0.29 2.57 16 45 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -33.88 378.51 -7.56 -41.44 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.69 Total: 6.91 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.77 Total: -17.33 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.48 Total: -33.79 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.26 Total: -18.88 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.88 -7.56 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492687610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.221 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds