Wall clock time and date at job start Tue Mar 31 2020 12:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42892 * 109.47255 * 2 1 4 4 C 1.42902 * 114.00105 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47183 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47259 * 175.00236 * 5 4 3 7 7 C 1.53002 * 109.47274 * 55.00361 * 5 4 3 8 8 N 1.46502 * 109.47432 * 295.00071 * 5 4 3 9 9 C 1.34770 * 120.00399 * 205.00012 * 8 5 4 10 10 O 1.21723 * 119.99910 * 0.02562 * 9 8 5 11 11 C 1.46253 * 120.00084 * 179.97438 * 9 8 5 12 12 C 1.35029 * 119.99874 * 173.21368 * 11 9 8 13 13 C 1.46961 * 119.99975 * 348.68782 * 12 11 9 14 14 C 1.40017 * 120.09850 * 316.40351 * 13 12 11 15 15 C 1.37603 * 119.89569 * 179.70004 * 14 13 12 16 16 C 1.39180 * 120.09861 * 0.59462 * 15 14 13 17 17 O 1.35571 * 119.89806 * 179.69491 * 16 15 14 18 18 C 1.34780 * 116.99830 * 174.33912 * 17 16 15 19 19 H 1.07999 * 119.99906 * 5.06335 * 18 17 16 20 20 C 1.38715 * 120.00032 * 185.06505 * 18 17 16 21 21 N 1.31513 * 120.00025 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00250 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47316 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47239 * 119.99828 * 22 20 18 25 25 H 1.48502 * 109.47491 * 239.99839 * 22 20 18 26 26 C 1.39174 * 120.20148 * 359.68257 * 16 15 14 27 27 C 1.37594 * 120.10453 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47300 * 300.00204 * 1 2 3 30 30 H 1.09008 * 109.46909 * 59.99823 * 1 2 3 31 31 H 1.08994 * 109.47099 * 240.00031 * 2 1 3 32 32 H 1.09003 * 109.46618 * 120.00515 * 2 1 3 33 33 H 1.08997 * 109.46805 * 60.00337 * 4 3 2 34 34 H 1.08996 * 109.47336 * 299.99941 * 4 3 2 35 35 H 1.09002 * 109.46875 * 300.00110 * 7 5 4 36 36 H 1.08999 * 109.46838 * 59.99878 * 7 5 4 37 37 H 1.08997 * 109.47338 * 179.97438 * 7 5 4 38 38 H 0.97002 * 119.99265 * 25.00067 * 8 5 4 39 39 H 1.07996 * 119.99909 * 353.21777 * 11 9 8 40 40 H 1.07995 * 119.99635 * 168.68592 * 12 11 9 41 41 H 1.07998 * 120.05302 * 359.97438 * 14 13 12 42 42 H 1.08002 * 119.95434 * 180.27361 * 15 14 13 43 43 H 0.97000 * 120.00168 * 179.97438 * 21 20 18 44 44 H 1.08003 * 119.94642 * 180.02562 * 26 16 15 45 45 H 1.08003 * 120.05143 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 1 4.9083 3.0253 0.0911 7 6 3.1572 3.6440 1.1828 8 7 3.3879 3.5611 -1.2506 9 6 4.0196 4.6573 -1.7147 10 8 4.9541 5.1298 -1.0941 11 6 3.5831 5.2787 -2.9647 12 6 4.1226 6.4517 -3.3599 13 6 4.9560 7.2273 -2.4307 14 6 4.5579 7.3891 -1.0981 15 6 5.3445 8.1109 -0.2300 16 6 6.5281 8.6903 -0.6779 17 8 7.2969 9.4058 0.1793 18 6 8.4857 9.8415 -0.2829 19 1 8.7519 9.6873 -1.3181 20 6 9.3672 10.4879 0.5711 21 7 9.0427 10.6762 1.8316 22 14 11.0150 11.0911 -0.0692 23 1 11.1373 10.7591 -1.5114 24 1 11.1068 12.5626 0.1090 25 1 12.1108 10.4318 0.6857 26 6 6.9249 8.5370 -2.0031 27 6 6.1477 7.8118 -2.8768 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9766 0.8908 35 1 2.0744 3.5570 1.0928 36 1 3.4828 3.1807 2.1141 37 1 3.4386 4.6971 1.1835 38 1 2.6434 3.1843 -1.7453 39 1 2.8292 4.7993 -3.5715 40 1 3.9417 6.8198 -4.3590 41 1 3.6370 6.9442 -0.7510 42 1 5.0405 8.2325 0.7992 43 1 9.6592 11.1279 2.4289 44 1 7.8443 8.9880 -2.3462 45 1 6.4567 7.6931 -3.9048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492687610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:48 Heat of formation + Delta-G solvation = -85.774683 kcal Electronic energy + Delta-G solvation = -26096.613421 eV Core-core repulsion = 22272.829659 eV Total energy + Delta-G solvation = -3823.783763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15887 -40.47225 -39.20094 -38.16076 -36.23523 -34.57629 -33.93316 -32.61947 -31.81198 -31.35188 -29.43083 -27.47519 -27.33741 -24.83502 -23.64281 -23.52525 -22.75614 -21.60165 -20.57093 -19.75864 -18.87440 -18.18152 -17.76166 -17.17778 -16.58091 -16.39463 -16.31730 -15.91187 -15.84688 -15.51147 -15.18322 -14.98435 -14.67593 -14.50070 -14.48441 -14.21676 -13.83395 -13.69020 -13.55454 -13.36668 -13.16671 -13.00021 -12.79625 -12.62896 -12.33414 -12.22480 -12.20150 -12.08925 -12.01300 -11.91658 -11.22799 -10.95992 -10.65313 -10.52572 -10.37350 -10.01207 -9.56088 -8.54310 -8.48065 -6.15420 0.01124 0.72444 1.13840 1.33508 1.44909 1.53027 2.17154 2.36948 2.50381 2.73324 2.87493 3.21477 3.53117 3.78240 4.02383 4.06641 4.09422 4.17235 4.19270 4.22401 4.31707 4.41616 4.49812 4.55312 4.55775 4.60633 4.62994 4.77052 4.78067 4.91629 5.00197 5.06703 5.08552 5.10734 5.27245 5.28346 5.30158 5.32638 5.47566 5.62615 5.69183 5.73323 5.86538 6.03025 6.24591 6.26054 6.76789 6.95665 7.49455 7.78237 8.75222 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.002462 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.996000 B =11368.470360 C =12125.745330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.400 6.400 4 C 0.064 3.936 5 C 0.145 3.855 6 H 0.078 0.922 7 C -0.152 4.152 8 N -0.709 5.709 9 C 0.526 3.474 10 O -0.567 6.567 11 C -0.231 4.231 12 C 0.004 3.996 13 C -0.159 4.159 14 C 0.016 3.984 15 C -0.221 4.221 16 C 0.127 3.873 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.026 4.026 21 N -0.921 5.921 22 Si 1.023 2.977 23 H -0.250 1.250 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.259 4.259 27 C -0.048 4.048 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.414 0.586 39 H 0.172 0.828 40 H 0.169 0.831 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.273 0.727 44 H 0.120 0.880 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 -22.011 -10.842 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.320 6.320 4 C -0.013 4.013 5 C 0.040 3.960 6 H 0.096 0.904 7 C -0.210 4.210 8 N -0.362 5.362 9 C 0.316 3.684 10 O -0.447 6.447 11 C -0.251 4.251 12 C -0.015 4.015 13 C -0.160 4.160 14 C -0.003 4.003 15 C -0.240 4.240 16 C 0.076 3.924 17 O -0.138 6.138 18 C -0.490 4.490 19 H 0.120 0.880 20 C -0.223 4.223 21 N -0.559 5.559 22 Si 0.842 3.158 23 H -0.173 1.173 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.278 4.278 27 C -0.066 4.066 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.251 0.749 39 H 0.189 0.811 40 H 0.186 0.814 41 H 0.134 0.866 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.734 -21.401 -9.965 28.370 hybrid contribution 0.760 0.125 0.419 0.877 sum -14.974 -21.276 -9.546 27.713 Atomic orbital electron populations 1.21757 0.93166 1.03156 1.02648 1.22632 0.96072 0.82860 1.00926 1.87869 1.20631 1.27872 1.95594 1.22694 0.81988 0.94349 1.02237 1.20935 0.99014 0.91494 0.84560 0.90397 1.21986 1.01678 0.99518 0.97830 1.45881 1.36143 1.29508 1.24637 1.19111 0.82501 0.80619 0.86142 1.91001 1.30591 1.62760 1.60381 1.23070 1.05621 0.98614 0.97826 1.22569 0.89425 0.91702 0.97829 1.18865 0.98174 1.04784 0.94139 1.20637 0.96956 0.90843 0.91822 1.20167 0.96598 1.07052 1.00202 1.19999 0.91571 0.90361 0.90459 1.83876 1.29352 1.61372 1.39195 1.21927 0.91761 1.37764 0.97532 0.87990 1.26695 1.03691 0.96784 0.95161 1.70187 1.38414 1.41591 1.05753 0.84477 0.74216 0.78161 0.78975 1.17347 1.19045 1.19340 1.21086 1.03968 1.09204 0.93520 1.21180 0.92910 0.93292 0.99168 0.89514 0.92678 0.92067 0.92307 0.92810 0.91433 0.90778 0.91202 0.91167 0.95047 0.74929 0.81115 0.81376 0.86561 0.88261 0.91785 0.86224 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.05 0.52 6.66 71.98 0.48 1.00 16 3 O -0.40 -5.98 9.19 -148.98 -1.37 -7.35 16 4 C 0.06 0.93 5.68 71.98 0.41 1.34 16 5 C 0.15 3.08 2.98 44.99 0.13 3.21 16 6 H 0.08 2.03 7.58 -2.39 -0.02 2.02 16 7 C -0.15 -3.53 9.29 71.98 0.67 -2.87 16 8 N -0.71 -14.54 5.05 -446.91 -2.26 -16.80 16 9 C 0.53 14.32 6.74 86.33 0.58 14.91 16 10 O -0.57 -21.79 11.84 -4.42 -0.05 -21.84 16 11 C -0.23 -4.73 9.90 23.62 0.23 -4.49 16 12 C 0.00 0.09 9.80 23.82 0.23 0.33 16 13 C -0.16 -5.62 4.54 -20.13 -0.09 -5.71 16 14 C 0.02 0.64 6.59 22.55 0.15 0.79 16 15 C -0.22 -11.00 9.97 22.35 0.22 -10.78 16 16 C 0.13 7.02 6.66 22.72 0.15 7.17 16 17 O -0.23 -15.02 9.74 -20.27 -0.20 -15.22 16 18 C -0.41 -25.50 9.48 67.93 0.64 -24.85 16 19 H 0.10 5.78 5.18 -2.91 -0.02 5.77 16 20 C -0.03 -1.55 5.49 84.85 0.47 -1.09 16 21 N -0.92 -58.96 13.67 21.62 0.30 -58.66 16 22 Si 1.02 44.66 29.55 68.60 2.03 46.68 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C -0.26 -12.36 9.14 22.34 0.20 -12.15 16 27 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.52 7.56 -2.39 -0.02 1.51 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.41 6.09 8.36 -92.71 -0.78 5.32 16 39 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.12 4.31 7.02 -2.91 -0.02 4.28 16 42 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 43 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.12 5.71 5.62 -2.91 -0.02 5.70 16 45 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -82.99 378.51 4.11 -78.88 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.22 Total: 29.65 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 5.45 Total: -35.35 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.96 Total: -75.46 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.62 Total: -44.41 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -82.99 4.11 -78.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492687610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.892 kcal (2) G-P(sol) polarization free energy of solvation -82.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds