Wall clock time and date at job start Tue Mar 31 2020 12:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.46678 * 2 1 4 4 C 1.35698 * 116.99648 * 179.97438 * 3 2 1 5 5 C 1.38586 * 120.16199 * 0.03002 * 4 3 2 6 6 C 1.38145 * 120.11297 * 179.97438 * 5 4 3 7 7 C 1.38576 * 120.44277 * 359.97438 * 6 5 4 8 8 C 1.37752 * 120.32100 * 359.71980 * 7 6 5 9 9 C 1.39963 * 119.87544 * 0.55657 * 8 7 6 10 10 C 1.46884 * 120.21838 * 179.71895 * 9 8 7 11 11 C 1.35159 * 119.99581 * 359.72481 * 10 9 8 12 12 C 1.41790 * 119.99767 * 179.97438 * 11 10 9 13 13 O 1.21778 * 120.00072 * 359.77393 * 12 11 10 14 14 N 1.34777 * 119.99873 * 179.77032 * 12 11 10 15 15 C 1.36753 * 120.00319 * 3.89545 * 14 12 11 16 16 H 1.08000 * 120.00007 * 127.67255 * 15 14 12 17 17 C 1.39094 * 119.99590 * 307.67980 * 15 14 12 18 18 N 1.31344 * 119.99498 * 165.04547 * 17 15 14 19 19 Si 1.86802 * 120.00469 * 345.04324 * 17 15 14 20 20 H 1.48496 * 109.46903 * 93.93381 * 19 17 15 21 21 H 1.48492 * 109.47075 * 213.93631 * 19 17 15 22 22 H 1.48497 * 109.46708 * 333.93425 * 19 17 15 23 23 C 1.46503 * 119.99804 * 184.17286 * 14 12 11 24 24 C 1.52995 * 109.47012 * 264.75527 * 23 14 12 25 25 O 1.42900 * 109.47391 * 65.62431 * 24 23 14 26 26 C 1.42890 * 114.00247 * 180.02562 * 25 24 23 27 27 H 1.08992 * 109.47148 * 299.99436 * 1 2 3 28 28 H 1.09004 * 109.46897 * 60.00126 * 1 2 3 29 29 H 1.09008 * 109.46697 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47299 * 240.00080 * 2 1 3 31 31 H 1.09000 * 109.47383 * 119.99943 * 2 1 3 32 32 H 1.08000 * 119.94791 * 359.94779 * 5 4 3 33 33 H 1.07997 * 119.77927 * 179.97438 * 6 5 4 34 34 H 1.07994 * 119.84071 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.06377 * 180.28535 * 8 7 6 36 36 H 1.08000 * 120.00471 * 179.72698 * 10 9 8 37 37 H 1.07997 * 120.00446 * 0.02562 * 11 10 9 38 38 H 0.97007 * 120.00131 * 179.97438 * 18 17 15 39 39 H 1.08992 * 109.47074 * 24.76035 * 23 14 12 40 40 H 1.09004 * 109.47063 * 144.75727 * 23 14 12 41 41 H 1.09004 * 109.47145 * 185.62216 * 24 23 14 42 42 H 1.09004 * 109.47357 * 305.61827 * 24 23 14 43 43 H 1.09002 * 109.47109 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.47215 * 299.99944 * 26 25 24 45 45 H 1.08997 * 109.47628 * 59.99804 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 4.1989 0.4285 0.0004 6 6 5.5683 0.6107 0.0005 7 6 6.1067 1.8875 0.0000 8 6 5.2813 2.9903 -0.0062 9 6 3.8919 2.8213 -0.0004 10 6 3.0047 3.9919 -0.0007 11 6 3.5295 5.2375 -0.0011 12 6 2.6732 6.3676 -0.0020 13 8 1.4649 6.2159 -0.0066 14 7 3.1965 7.6096 0.0023 15 6 4.5511 7.7812 -0.0729 16 1 4.9717 8.4368 -0.8210 17 6 5.3872 7.1112 0.8141 18 7 6.6757 7.0344 0.5712 19 14 4.6777 6.3208 2.3507 20 1 4.3736 4.8932 2.0776 21 1 5.6647 6.4140 3.4562 22 1 3.4306 7.0269 2.7398 23 6 2.3144 8.7758 0.0937 24 6 2.0212 9.3048 -1.3116 25 8 1.2676 8.3326 -2.0390 26 6 0.9396 8.7297 -3.3718 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7880 -0.5703 0.0008 33 1 6.2236 -0.2478 0.0008 34 1 7.1786 2.0187 -0.0004 35 1 5.7053 3.9835 -0.0112 36 1 1.9331 3.8575 -0.0007 37 1 4.6011 5.3720 -0.0015 38 1 7.2589 6.5675 1.1900 39 1 1.3803 8.4878 0.5758 40 1 2.8013 9.5545 0.6808 41 1 1.4481 10.2292 -1.2396 42 1 2.9602 9.4989 -1.8301 43 1 0.3683 7.9380 -3.8566 44 1 0.3443 9.6423 -3.3430 45 1 1.8563 8.9115 -3.9328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493064553.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:12 Heat of formation + Delta-G solvation = -56.034822 kcal Electronic energy + Delta-G solvation = -27339.157130 eV Core-core repulsion = 23516.662985 eV Total energy + Delta-G solvation = -3822.494145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.04568 -39.07309 -37.41659 -37.06726 -34.73153 -33.63630 -32.20011 -31.79854 -29.97129 -29.50665 -28.48928 -25.90339 -24.64090 -24.30995 -23.64028 -21.83766 -21.57608 -20.25501 -18.68145 -18.07768 -17.26049 -16.09039 -16.06515 -15.88532 -15.70392 -15.34309 -15.13411 -14.65485 -14.38084 -14.24909 -14.00288 -13.45242 -13.35517 -13.20849 -13.07558 -12.77204 -12.65219 -12.29981 -12.04497 -11.92900 -11.84171 -11.66543 -11.55591 -11.15127 -10.98362 -10.86598 -10.74488 -10.63580 -10.41169 -10.32380 -10.12934 -9.49890 -9.10907 -9.01499 -8.53023 -8.34877 -7.58359 -7.32587 -6.47724 -4.22570 1.06187 1.64325 2.59437 3.19720 3.25580 3.30406 3.37109 4.04830 4.13955 4.37164 4.52600 4.60142 4.82220 4.83688 4.92596 4.97957 5.06706 5.14186 5.29600 5.41186 5.54976 5.58431 5.60861 5.68098 5.70392 5.84986 5.89671 5.92516 5.97941 5.99107 6.00691 6.05915 6.28255 6.29381 6.37609 6.53526 6.56543 6.70866 6.79635 6.97584 7.18984 7.36481 7.58225 7.70260 7.75139 7.84012 8.45921 8.98915 9.33112 9.81831 10.59861 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.004858 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.208042 B = 5762.646118 C = 7298.372756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.307 6.307 4 C 0.138 3.862 5 C -0.215 4.215 6 C -0.086 4.086 7 C -0.155 4.155 8 C -0.069 4.069 9 C -0.077 4.077 10 C -0.068 4.068 11 C -0.174 4.174 12 C 0.517 3.483 13 O -0.580 6.580 14 N -0.462 5.462 15 C -0.341 4.341 16 H 0.099 0.901 17 C 0.074 3.926 18 N -0.864 5.864 19 Si 0.847 3.153 20 H -0.246 1.246 21 H -0.285 1.285 22 H -0.263 1.263 23 C 0.111 3.889 24 C 0.051 3.949 25 O -0.367 6.367 26 C 0.033 3.967 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.276 0.724 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -10.014 -2.020 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.220 6.220 4 C 0.092 3.908 5 C -0.234 4.234 6 C -0.104 4.104 7 C -0.173 4.173 8 C -0.087 4.087 9 C -0.078 4.078 10 C -0.088 4.088 11 C -0.194 4.194 12 C 0.311 3.689 13 O -0.465 6.465 14 N -0.183 5.183 15 C -0.469 4.469 16 H 0.116 0.884 17 C -0.133 4.133 18 N -0.499 5.499 19 Si 0.671 3.329 20 H -0.170 1.170 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.012 4.012 24 C -0.027 4.027 25 O -0.285 6.285 26 C -0.064 4.064 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.274 -10.128 -1.889 11.574 hybrid contribution 0.242 -0.214 0.653 0.728 sum -5.032 -10.342 -1.237 11.567 Atomic orbital electron populations 1.21773 0.92803 1.02500 1.03894 1.22762 0.95926 0.82324 1.01078 1.86081 1.18994 1.28729 1.88217 1.19111 0.82200 0.93320 0.96178 1.21061 0.94396 0.97454 1.10459 1.20940 0.94104 0.97178 0.98214 1.20993 1.00002 0.92182 1.04164 1.21527 0.91657 1.00091 0.95425 1.18510 0.93219 0.90557 1.05496 1.21989 0.99153 0.90445 0.97257 1.22603 1.02641 0.92960 1.01223 1.17141 0.87736 0.84441 0.79628 1.90679 1.15206 1.86665 1.53981 1.43451 1.06374 1.03158 1.65349 1.18985 0.78798 1.32036 1.17079 0.88362 1.25687 0.94966 0.95674 0.97004 1.69688 1.03547 1.39946 1.36731 0.87392 0.79869 0.82173 0.83436 1.17049 1.21159 1.18692 1.21484 0.95597 0.90153 0.93998 1.22958 0.94534 0.90670 0.94490 1.88140 1.73673 1.42441 1.24277 1.22643 0.98942 0.99638 0.85222 0.91390 0.91334 0.90624 0.92196 0.92266 0.85752 0.86105 0.85722 0.84231 0.85070 0.83715 0.91326 0.90645 0.89778 0.93964 0.93044 0.90369 0.95041 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.61 5.46 37.16 0.20 0.81 16 3 O -0.31 -4.99 9.32 -18.80 -0.18 -5.16 16 4 C 0.14 2.35 6.71 -38.63 -0.26 2.09 16 5 C -0.21 -3.01 9.03 -39.49 -0.36 -3.37 16 6 C -0.09 -1.16 10.03 -39.49 -0.40 -1.55 16 7 C -0.16 -2.38 10.02 -39.63 -0.40 -2.77 16 8 C -0.07 -1.29 9.41 -39.11 -0.37 -1.66 16 9 C -0.08 -1.52 5.88 -104.93 -0.62 -2.14 16 10 C -0.07 -1.52 8.86 -37.18 -0.33 -1.85 16 11 C -0.17 -4.25 4.97 -39.32 -0.20 -4.44 16 12 C 0.52 13.51 5.85 -14.90 -0.09 13.42 16 13 O -0.58 -16.01 15.18 5.04 0.08 -15.93 16 14 N -0.46 -11.58 1.94 -118.00 -0.23 -11.81 16 15 C -0.34 -8.93 9.29 -15.04 -0.14 -9.07 16 16 H 0.10 2.70 8.06 -52.49 -0.42 2.27 16 17 C 0.07 1.92 3.81 -17.44 -0.07 1.85 16 18 N -0.86 -23.00 13.95 55.50 0.77 -22.23 16 19 Si 0.85 20.61 24.43 -169.99 -4.15 16.46 16 20 H -0.25 -5.86 5.73 56.52 0.32 -5.53 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.11 2.39 5.81 -4.04 -0.02 2.37 16 24 C 0.05 0.97 6.25 37.16 0.23 1.21 16 25 O -0.37 -7.68 9.98 -35.31 -0.35 -8.04 16 26 C 0.03 0.51 11.01 101.05 1.11 1.63 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.14 2.81 6.17 -52.49 -0.32 2.48 16 36 H 0.13 3.01 7.03 -52.49 -0.37 2.64 16 37 H 0.15 3.59 2.67 -52.49 -0.14 3.45 16 38 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.08 1.66 7.33 -51.93 -0.38 1.28 16 40 H 0.08 1.62 8.08 -51.93 -0.42 1.20 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -31.99 367.94 -6.44 -38.44 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.62 Total: 7.27 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.31 Total: -4.55 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.55 Total: -34.04 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.45 Total: -29.13 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.15 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.99 -6.44 -38.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493064553.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.598 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds