Wall clock time and date at job start Tue Mar 31 2020 12:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47187 * 2 1 4 4 C 1.34773 * 119.99980 * 83.19619 * 3 2 1 5 5 O 1.21727 * 120.00031 * 180.27762 * 4 3 2 6 6 C 1.46254 * 120.00172 * 359.97438 * 4 3 2 7 7 C 1.35026 * 119.99836 * 173.80474 * 6 4 3 8 8 C 1.46956 * 120.00144 * 348.20066 * 7 6 4 9 9 C 1.40029 * 120.10608 * 315.69031 * 8 7 6 10 10 C 1.37599 * 119.89871 * 179.74079 * 9 8 7 11 11 C 1.39174 * 120.09845 * 0.55571 * 10 9 8 12 12 O 1.35571 * 119.89618 * 179.71836 * 11 10 9 13 13 C 1.34780 * 117.00253 * 174.44128 * 12 11 10 14 14 H 1.08001 * 119.99773 * 5.04958 * 13 12 11 15 15 C 1.38720 * 120.00181 * 185.05171 * 13 12 11 16 16 N 1.31505 * 119.99726 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99848 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47119 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46903 * 119.99971 * 17 15 13 20 20 H 1.48500 * 109.46998 * 239.99613 * 17 15 13 21 21 C 1.39170 * 120.20736 * 359.69452 * 11 10 9 22 22 C 1.37603 * 120.10136 * 0.02562 * 21 11 10 23 23 C 1.46508 * 120.00002 * 263.19856 * 3 2 1 24 24 H 1.08996 * 109.47383 * 181.02417 * 23 3 2 25 25 C 1.52997 * 109.46956 * 301.02477 * 23 3 2 26 26 C 1.52996 * 109.46883 * 61.02225 * 23 3 2 27 27 O 1.42901 * 109.47510 * 293.72136 * 26 23 3 28 28 H 1.09003 * 109.47192 * 304.96119 * 1 2 3 29 29 H 1.08997 * 109.47552 * 64.96838 * 1 2 3 30 30 H 1.09005 * 109.47015 * 184.96322 * 1 2 3 31 31 H 1.09007 * 109.46801 * 239.99952 * 2 1 3 32 32 H 1.08997 * 109.47377 * 120.00087 * 2 1 3 33 33 H 1.07999 * 119.99902 * 353.80660 * 6 4 3 34 34 H 1.07994 * 119.99707 * 168.21026 * 7 6 4 35 35 H 1.07998 * 120.04460 * 0.02562 * 9 8 7 36 36 H 1.08002 * 119.94584 * 180.24762 * 10 9 8 37 37 H 0.97003 * 120.00046 * 179.97438 * 16 15 13 38 38 H 1.07998 * 119.95534 * 180.02562 * 21 11 10 39 39 H 1.07997 * 120.05433 * 180.02562 * 22 21 11 40 40 H 1.09002 * 109.47233 * 300.00042 * 25 23 3 41 41 H 1.09005 * 109.47193 * 60.00029 * 25 23 3 42 42 H 1.09001 * 109.47583 * 179.97438 * 25 23 3 43 43 H 1.08997 * 109.47298 * 53.72992 * 26 23 3 44 44 H 1.09004 * 109.46953 * 173.72221 * 26 23 3 45 45 H 0.96698 * 113.99868 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1126 2.0626 1.1590 5 8 2.5136 3.2119 1.1584 6 6 1.7268 1.4234 2.4166 7 6 1.9378 2.0586 3.5893 8 6 2.7801 3.2621 3.6319 9 6 3.9947 3.2944 2.9359 10 6 4.7774 4.4254 2.9744 11 6 4.3690 5.5320 3.7130 12 8 5.1461 6.6422 3.7527 13 6 4.6433 7.7187 4.3889 14 1 3.6988 7.6470 4.9077 15 6 5.3388 8.9189 4.3771 16 7 6.4890 9.0061 3.7457 17 14 4.6414 10.4112 5.2582 18 1 3.3440 10.0537 5.8861 19 1 5.5936 10.8564 6.3073 20 1 4.4320 11.5098 4.2813 21 6 3.1651 5.5027 4.4106 22 6 2.3731 4.3781 4.3733 23 6 2.4042 2.0217 -1.2599 24 1 2.7563 3.0337 -1.0601 25 6 3.5226 1.2138 -1.9211 26 6 1.1944 2.0780 -2.1948 27 8 0.8229 0.7511 -2.5736 28 1 -0.3634 0.5889 0.8422 29 1 -0.3634 0.4348 -0.9311 30 1 -0.3633 -1.0239 0.0889 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.2732 0.4433 2.4073 34 1 1.4877 1.6821 4.4959 35 1 4.3144 2.4345 2.3660 36 1 5.7125 4.4526 2.4346 37 1 6.9752 9.8455 3.7372 38 1 2.8520 6.3638 4.9822 39 1 1.4388 4.3563 4.9146 40 1 4.3845 1.1737 -1.2550 41 1 3.1704 0.2018 -2.1210 42 1 3.8094 1.6900 -2.8587 43 1 0.3603 2.5562 -1.6813 44 1 1.4499 2.6520 -3.0855 45 1 0.0608 0.7104 -3.1673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493123703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:32 Heat of formation + Delta-G solvation = -76.665344 kcal Electronic energy + Delta-G solvation = -26981.105958 eV Core-core repulsion = 23157.717206 eV Total energy + Delta-G solvation = -3823.388752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34890 -40.58764 -38.85525 -37.89423 -36.28786 -34.70367 -34.10048 -33.09312 -31.82868 -30.58157 -29.44518 -27.46877 -27.36031 -24.99194 -24.14888 -23.52314 -22.76469 -20.96479 -19.88141 -19.41780 -18.91576 -18.60203 -17.89797 -17.14275 -16.48545 -16.39105 -16.10203 -15.87010 -15.55883 -15.43738 -14.97979 -14.90146 -14.72705 -14.59173 -14.37642 -14.06236 -13.79598 -13.62954 -13.55589 -13.44910 -13.24410 -13.01000 -12.64121 -12.63232 -12.35804 -12.23272 -12.13300 -12.08697 -11.89814 -11.67409 -11.23579 -10.95842 -10.83935 -10.54910 -10.37066 -9.75955 -9.41508 -8.56491 -8.48812 -6.16080 -0.01522 0.70839 1.10874 1.33255 1.44322 1.52751 2.15123 2.16781 2.46884 2.86579 3.20030 3.40840 3.51867 3.72308 3.99501 4.05081 4.10487 4.13532 4.15967 4.26425 4.37979 4.53844 4.54681 4.55583 4.57520 4.62414 4.74262 4.77074 4.86136 5.01211 5.05667 5.08542 5.11701 5.15737 5.23904 5.25936 5.31693 5.44018 5.58078 5.66243 5.71648 5.78089 5.86647 6.02195 6.24264 6.59906 6.91243 6.95128 7.40411 7.77332 8.74666 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.002890 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.585431 B = 9686.761340 C =10311.291656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.600 5.600 4 C 0.526 3.474 5 O -0.571 6.571 6 C -0.233 4.233 7 C 0.005 3.995 8 C -0.157 4.157 9 C 0.013 3.987 10 C -0.220 4.220 11 C 0.128 3.872 12 O -0.231 6.231 13 C -0.415 4.415 14 H 0.103 0.897 15 C -0.024 4.024 16 N -0.921 5.921 17 Si 1.022 2.978 18 H -0.250 1.250 19 H -0.265 1.265 20 H -0.268 1.268 21 C -0.257 4.257 22 C -0.048 4.048 23 C 0.128 3.872 24 H 0.077 0.923 25 C -0.145 4.145 26 C 0.081 3.919 27 O -0.564 6.564 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.273 0.727 38 H 0.120 0.880 39 H 0.148 0.852 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.928 -21.669 -9.031 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.332 5.332 4 C 0.318 3.682 5 O -0.452 6.452 6 C -0.253 4.253 7 C -0.014 4.014 8 C -0.158 4.158 9 C -0.005 4.005 10 C -0.239 4.239 11 C 0.077 3.923 12 O -0.138 6.138 13 C -0.491 4.491 14 H 0.120 0.880 15 C -0.222 4.222 16 N -0.559 5.559 17 Si 0.841 3.159 18 H -0.174 1.174 19 H -0.190 1.190 20 H -0.193 1.193 21 C -0.276 4.276 22 C -0.066 4.066 23 C 0.024 3.976 24 H 0.095 0.905 25 C -0.203 4.203 26 C 0.003 3.997 27 O -0.373 6.373 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.835 -21.056 -8.825 27.227 hybrid contribution -0.124 1.353 -0.310 1.393 sum -14.959 -19.703 -9.134 26.371 Atomic orbital electron populations 1.22282 0.95037 1.02665 1.02485 1.21648 0.95270 0.80588 1.03470 1.48065 1.64533 1.15067 1.05538 1.19117 0.77331 0.85927 0.85799 1.90977 1.47674 1.19521 1.87031 1.23127 1.08866 1.02585 0.90706 1.22595 0.90061 0.90072 0.98675 1.18848 0.96667 0.96570 1.03695 1.20628 0.92569 0.95098 0.92230 1.20168 1.03120 0.94146 1.06478 1.19976 0.90794 0.87783 0.93732 1.83875 1.41838 1.19151 1.68892 1.21932 1.07644 0.87558 1.31969 0.88015 1.26679 0.95989 1.01406 0.98087 1.70183 1.15305 1.27951 1.42476 0.84488 0.78710 0.75154 0.77547 1.17365 1.18997 1.19329 1.21085 0.97274 1.01419 1.07852 1.21170 0.98203 0.91226 0.95960 1.21150 0.95006 0.97859 0.83590 0.90492 1.21933 0.96610 1.01513 1.00263 1.22253 0.95569 0.84895 0.97029 1.86459 1.54350 1.26323 1.70132 0.93956 0.91206 0.90341 0.88927 0.90187 0.81652 0.81408 0.86640 0.88121 0.91759 0.86193 0.83469 0.93971 0.90320 0.90895 0.94334 0.91630 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.56 71.98 0.69 -1.36 16 2 C 0.11 1.65 4.74 86.38 0.41 2.06 16 3 N -0.60 -13.34 2.39 -803.00 -1.92 -15.25 16 4 C 0.53 15.21 6.62 86.33 0.57 15.78 16 5 O -0.57 -22.68 11.59 -4.43 -0.05 -22.74 16 6 C -0.23 -5.18 8.51 23.62 0.20 -4.98 16 7 C 0.01 0.13 9.80 23.82 0.23 0.36 16 8 C -0.16 -5.64 4.49 -20.13 -0.09 -5.73 16 9 C 0.01 0.54 6.64 22.55 0.15 0.69 16 10 C -0.22 -10.96 9.97 22.34 0.22 -10.74 16 11 C 0.13 7.07 6.66 22.72 0.15 7.23 16 12 O -0.23 -14.98 9.74 -20.27 -0.20 -15.18 16 13 C -0.42 -25.55 9.48 67.94 0.64 -24.91 16 14 H 0.10 5.77 5.18 -2.91 -0.02 5.75 16 15 C -0.02 -1.44 5.49 84.86 0.47 -0.98 16 16 N -0.92 -58.81 13.67 21.62 0.30 -58.52 16 17 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 18 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C -0.26 -12.32 9.14 22.34 0.20 -12.11 16 22 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 23 C 0.13 2.84 3.16 44.99 0.14 2.99 16 24 H 0.08 2.28 6.90 -2.39 -0.02 2.27 16 25 C -0.15 -2.75 8.95 71.98 0.64 -2.10 16 26 C 0.08 1.30 6.27 71.98 0.45 1.75 16 27 O -0.56 -6.23 8.41 -148.98 -1.25 -7.48 16 28 H 0.04 0.61 7.34 -2.39 -0.02 0.59 16 29 H 0.07 0.89 5.38 -2.39 -0.01 0.88 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 31 H 0.09 1.29 5.52 -2.38 -0.01 1.28 16 32 H 0.08 0.99 6.60 -2.39 -0.02 0.97 16 33 H 0.17 2.33 6.04 -2.91 -0.02 2.31 16 34 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.12 4.32 7.12 -2.91 -0.02 4.29 16 36 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.12 5.74 5.62 -2.91 -0.02 5.72 16 39 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.29 6.03 -2.38 -0.01 1.28 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 43 H 0.04 0.69 8.12 -2.39 -0.02 0.68 16 44 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.39 1.21 9.12 -74.06 -0.68 0.54 16 Total: -1.00 -83.63 359.95 4.56 -79.06 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.35 Total: 27.18 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 5.31 Total: -33.66 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -1.62 Total: -73.77 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.50 Total: -45.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -83.63 4.56 -79.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493123703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.399 kcal (2) G-P(sol) polarization free energy of solvation -83.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds