Wall clock time and date at job start Tue Mar 31 2020 13:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45197 * 109.47117 * 2 1 4 4 C 1.34234 * 116.99964 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00050 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99760 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47285 * 60.00057 * 6 4 3 8 8 C 1.53001 * 109.47196 * 299.99683 * 6 4 3 9 9 C 1.53004 * 109.47039 * 179.97438 * 6 4 3 10 10 C 1.50693 * 109.47130 * 179.97438 * 9 6 4 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 6 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 6 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38221 * 120.03481 * 180.25794 * 14 13 12 16 16 C 1.38861 * 120.61893 * 359.74707 * 15 14 13 17 17 C 1.36475 * 120.57366 * 359.97438 * 16 15 14 18 18 C 1.40732 * 119.94463 * 0.02562 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.47019 * 60.00183 * 23 21 19 27 27 H 1.09004 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47592 * 299.99963 * 1 2 3 29 29 H 1.09009 * 109.47211 * 60.00370 * 1 2 3 30 30 H 1.09000 * 109.47592 * 240.00037 * 2 1 3 31 31 H 1.09001 * 109.47458 * 119.99832 * 2 1 3 32 32 H 1.09001 * 109.47139 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.46997 * 299.99386 * 7 6 4 34 34 H 1.08991 * 109.47707 * 59.99859 * 7 6 4 35 35 H 1.09004 * 109.46992 * 300.00320 * 8 6 4 36 36 H 1.08996 * 109.47225 * 60.00385 * 8 6 4 37 37 H 1.09002 * 109.47195 * 180.02562 * 8 6 4 38 38 H 1.09004 * 109.46955 * 59.99798 * 9 6 4 39 39 H 1.08999 * 109.47357 * 300.00189 * 9 6 4 40 40 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 41 41 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.69371 * 179.76331 * 15 14 13 43 43 H 1.07997 * 119.71792 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 45 45 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.4497 3.6836 1.2499 8 6 3.4485 3.6851 -1.2486 9 6 5.4486 2.8574 -0.0001 10 6 6.0246 4.2499 -0.0002 11 8 5.2858 5.2117 0.0003 12 7 7.3608 4.4265 0.0002 13 6 7.8929 5.7087 0.0920 14 6 7.2439 6.7794 -0.5035 15 6 7.7800 8.0502 -0.4136 16 6 8.9658 8.2705 0.2747 17 6 9.6225 7.2357 0.8750 18 6 9.0980 5.9320 0.7985 19 6 9.7709 4.8568 1.4158 20 1 9.2213 3.9771 1.7168 21 6 11.1508 4.9298 1.6380 22 7 11.8949 5.6994 0.8856 23 14 11.9303 3.9286 3.0089 24 1 13.3934 4.1813 3.0361 25 1 11.3358 4.3248 4.3109 26 1 11.6813 2.4843 2.7702 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8660 4.6910 1.2500 33 1 2.3612 3.7407 1.2504 34 1 3.7860 3.1511 2.1394 35 1 3.7841 3.1534 -2.1390 36 1 2.3601 3.7422 -1.2481 37 1 3.8655 4.6922 -1.2484 38 1 5.7845 2.3256 -0.8904 39 1 5.7847 2.3248 0.8896 40 1 7.9513 3.6597 -0.0636 41 1 6.3213 6.6196 -1.0418 42 1 7.2718 8.8797 -0.8827 43 1 9.3714 9.2695 0.3362 44 1 10.5439 7.4172 1.4084 45 1 11.5043 6.1587 0.1256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514799756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:51 Heat of formation + Delta-G solvation = -132.382389 kcal Electronic energy + Delta-G solvation = -26967.112604 eV Core-core repulsion = 23141.307780 eV Total energy + Delta-G solvation = -3825.804824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11826 -41.17060 -39.41562 -37.88056 -36.61129 -35.72467 -35.37693 -32.57142 -31.26089 -30.94284 -28.81917 -28.33430 -26.89272 -25.61288 -23.81653 -23.27973 -22.72952 -21.40765 -20.56564 -19.79909 -18.54411 -18.07242 -18.03909 -17.62624 -16.80202 -16.65804 -16.48754 -15.81976 -15.57558 -15.45061 -15.12212 -15.05387 -14.58284 -14.36141 -14.21081 -14.01821 -13.81102 -13.61487 -13.40283 -13.31954 -12.92250 -12.86373 -12.73272 -12.53054 -12.49563 -12.41741 -12.10547 -12.07421 -12.02605 -11.96637 -11.53673 -11.44535 -11.40416 -10.99919 -10.75262 -10.36169 -9.51574 -9.28228 -8.77914 -6.39515 0.78406 0.94861 1.06718 1.49369 1.53242 1.65275 1.75704 1.80478 2.33646 2.47048 2.71348 3.29864 3.56618 3.69830 3.72602 3.89031 4.00108 4.07344 4.09320 4.33935 4.42957 4.44097 4.50040 4.52199 4.71532 4.76880 4.78172 4.84375 4.85590 4.92135 4.96966 4.98743 5.09985 5.12581 5.27975 5.35194 5.38528 5.45706 5.52491 5.70953 5.80448 5.95817 6.06908 6.15933 6.38369 6.62126 6.64412 6.89137 6.93812 7.37209 8.07058 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003211 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.204620 B = 8717.114100 C =10061.183684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.353 6.353 4 C 0.480 3.520 5 O -0.533 6.533 6 C -0.030 4.030 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.116 4.116 10 C 0.507 3.493 11 O -0.548 6.548 12 N -0.639 5.639 13 C 0.006 3.994 14 C -0.084 4.084 15 C -0.240 4.240 16 C -0.098 4.098 17 C -0.228 4.228 18 C 0.062 3.938 19 C -0.545 4.545 20 H 0.079 0.921 21 C 0.007 3.993 22 N -0.816 5.816 23 Si 1.112 2.888 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.255 1.255 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.409 0.591 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.653 -10.334 -1.486 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.324 3.676 5 O -0.422 6.422 6 C -0.031 4.031 7 C -0.205 4.205 8 C -0.204 4.204 9 C -0.155 4.155 10 C 0.296 3.704 11 O -0.427 6.427 12 N -0.281 5.281 13 C -0.089 4.089 14 C -0.104 4.104 15 C -0.259 4.259 16 C -0.117 4.117 17 C -0.248 4.248 18 C 0.058 3.942 19 C -0.573 4.573 20 H 0.097 0.903 21 C -0.210 4.210 22 N -0.439 5.439 23 Si 0.930 3.070 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.179 1.179 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.245 0.755 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.550 -10.296 -0.762 18.665 hybrid contribution -0.731 0.040 -0.863 1.132 sum -16.281 -10.256 -1.625 19.311 Atomic orbital electron populations 1.21823 0.90326 1.04389 1.03750 1.23341 0.97183 0.79159 1.02638 1.86510 1.23412 1.33730 1.83316 1.23710 0.80970 0.91977 0.70962 1.90647 1.61057 1.43815 1.46728 1.20129 0.93305 0.88722 1.00982 1.22049 1.02709 1.01886 0.93824 1.22052 1.02714 1.01926 0.93676 1.21509 0.94028 0.93395 1.06610 1.20792 0.81697 0.91925 0.75988 1.90515 1.58517 1.43340 1.50370 1.42899 1.06830 1.07693 1.70690 1.17763 0.99919 0.85168 1.06004 1.20894 0.98918 0.92450 0.98173 1.20621 0.99126 0.96675 1.09496 1.20658 0.95384 0.97959 0.97693 1.20772 1.03003 0.93010 1.08045 1.17821 0.92597 0.93512 0.90256 1.20503 0.95849 1.03685 1.37233 0.90292 1.28270 0.95062 0.96691 1.00994 1.70576 1.40431 1.20936 1.11972 0.83041 0.75655 0.75640 0.72631 1.20019 1.19432 1.17864 0.88130 0.91307 0.91219 0.91188 0.91322 0.89851 0.90238 0.92722 0.92278 0.90317 0.89636 0.87021 0.87564 0.75459 0.86341 0.86433 0.86876 0.88977 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.05 0.82 6.19 71.98 0.45 1.27 16 3 O -0.35 -7.65 10.03 -51.46 -0.52 -8.17 16 4 C 0.48 12.09 6.55 71.24 0.47 12.56 16 5 O -0.53 -15.67 15.73 21.97 0.35 -15.32 16 6 C -0.03 -0.75 0.71 -52.93 -0.04 -0.79 16 7 C -0.15 -3.72 8.11 71.98 0.58 -3.14 16 8 C -0.15 -3.49 8.11 71.98 0.58 -2.90 16 9 C -0.12 -3.14 4.06 29.85 0.12 -3.02 16 10 C 0.51 17.54 7.08 87.65 0.62 18.16 16 11 O -0.55 -20.89 8.76 -3.03 -0.03 -20.91 16 12 N -0.64 -24.99 4.90 -302.28 -1.48 -26.47 16 13 C 0.01 0.28 6.33 38.88 0.25 0.52 16 14 C -0.08 -3.84 8.69 22.36 0.19 -3.64 16 15 C -0.24 -10.57 10.04 22.42 0.22 -10.35 16 16 C -0.10 -4.50 9.97 22.01 0.22 -4.28 16 17 C -0.23 -11.65 7.88 22.47 0.18 -11.47 16 18 C 0.06 3.19 5.32 -21.18 -0.11 3.08 16 19 C -0.54 -27.28 8.35 23.38 0.20 -27.09 16 20 H 0.08 3.76 7.39 -2.91 -0.02 3.74 16 21 C 0.01 0.33 4.95 85.26 0.42 0.75 16 22 N -0.82 -42.55 12.32 21.83 0.27 -42.28 16 23 Si 1.11 41.55 30.00 68.60 2.06 43.60 16 24 H -0.28 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 26 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 27 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 31 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 32 H 0.08 2.53 5.51 -2.39 -0.01 2.52 16 33 H 0.08 1.72 8.11 -2.38 -0.02 1.70 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.08 1.62 8.11 -2.39 -0.02 1.61 16 37 H 0.09 2.42 5.51 -2.39 -0.01 2.41 16 38 H 0.11 2.76 8.10 -2.38 -0.02 2.74 16 39 H 0.11 2.80 8.10 -2.39 -0.02 2.78 16 40 H 0.41 14.79 7.96 -92.71 -0.74 14.05 16 41 H 0.12 5.19 6.20 -2.91 -0.02 5.17 16 42 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.09 4.90 6.45 -2.91 -0.02 4.88 16 45 H 0.29 15.51 6.62 -92.70 -0.61 14.90 16 Total: -1.00 -61.04 366.83 6.16 -54.87 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: 0.42 Total: 45.77 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.09 Total: -31.09 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.21 Total: -68.75 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.20 Total: -44.41 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.06 Total: 43.60 kcal Total: -61.04 6.16 -54.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514799756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.508 kcal (2) G-P(sol) polarization free energy of solvation -61.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds