Wall clock time and date at job start Tue Mar 31 2020 12:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42891 * 109.47327 * 2 1 4 4 C 1.42897 * 114.00412 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47542 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.51179 * 304.89533 * 5 4 3 7 7 C 1.52880 * 109.62315 * 184.90841 * 5 4 3 8 8 N 1.47159 * 108.60541 * 187.89411 * 7 5 4 9 9 C 1.34775 * 120.98101 * 230.49628 * 8 7 5 10 10 O 1.21586 * 120.00058 * 355.62654 * 9 8 7 11 11 C 1.47639 * 119.99786 * 175.62662 * 9 8 7 12 12 C 1.40013 * 119.89308 * 220.14065 * 11 9 8 13 13 C 1.36319 * 120.10399 * 179.97438 * 12 11 9 14 14 C 1.40884 * 119.89409 * 0.02562 * 13 12 11 15 15 C 1.41113 * 120.10191 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99846 * 207.66994 * 15 14 13 17 17 C 1.40229 * 119.99974 * 27.67740 * 15 14 13 18 18 N 1.30641 * 119.99915 * 14.54852 * 17 15 14 19 19 Si 1.86796 * 119.99571 * 194.55081 * 17 15 14 20 20 H 1.48495 * 109.47344 * 59.99667 * 19 17 15 21 21 H 1.48505 * 109.46811 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47317 * 299.99308 * 19 17 15 23 23 C 1.40885 * 119.79552 * 359.97438 * 14 13 12 24 24 C 1.36317 * 119.88878 * 0.02562 * 23 14 13 25 25 C 1.47156 * 118.03376 * 50.22312 * 8 7 5 26 26 C 1.53294 * 108.38486 * 309.71480 * 25 8 7 27 27 O 1.42958 * 109.51558 * 64.99352 * 5 4 3 28 28 H 1.09009 * 109.46646 * 299.99937 * 1 2 3 29 29 H 1.09001 * 109.47260 * 59.99645 * 1 2 3 30 30 H 1.09001 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46454 * 239.99947 * 2 1 3 32 32 H 1.08995 * 109.46615 * 120.00141 * 2 1 3 33 33 H 1.08996 * 109.47311 * 59.99451 * 4 3 2 34 34 H 1.09009 * 109.46357 * 300.00164 * 4 3 2 35 35 H 1.08992 * 109.62206 * 68.07163 * 7 5 4 36 36 H 1.09000 * 109.51943 * 307.65394 * 7 5 4 37 37 H 1.08001 * 119.95243 * 359.95981 * 12 11 9 38 38 H 1.08000 * 120.05163 * 179.72608 * 13 12 11 39 39 H 0.97007 * 119.99770 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.05705 * 180.02562 * 23 14 13 41 41 H 1.07998 * 119.94738 * 180.02562 * 24 23 14 42 42 H 1.09002 * 109.67991 * 69.44443 * 25 8 7 43 43 H 1.09002 * 109.67617 * 189.95100 * 25 8 7 44 44 H 1.09003 * 109.50899 * 172.22685 * 26 25 8 45 45 H 1.08994 * 109.51259 * 292.32916 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9382 0.0001 6 1 3.3511 3.4421 -0.8421 7 6 5.3440 3.0644 -0.1237 8 7 5.7153 4.4752 0.0697 9 6 6.5150 5.1090 -0.8107 10 8 7.0053 4.4947 -1.7384 11 6 6.7957 6.5494 -0.6487 12 6 6.8399 7.3826 -1.7731 13 6 7.0982 8.7132 -1.6284 14 6 7.3214 9.2496 -0.3449 15 6 7.5897 10.6264 -0.1901 16 1 8.1781 10.9710 0.6474 17 6 7.0923 11.5469 -1.1237 18 7 6.1591 11.1859 -1.9636 19 14 7.7641 13.2894 -1.1662 20 1 9.2227 13.2510 -1.4422 21 1 7.0784 14.0583 -2.2357 22 1 7.5256 13.9440 0.1452 23 6 7.2760 8.4073 0.7835 24 6 7.0170 7.0780 0.6288 25 6 5.1826 5.1751 1.2494 26 6 3.6676 4.9476 1.3034 27 8 3.3989 3.5458 1.2218 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8334 0.9766 -0.8907 34 1 3.8340 0.9763 0.8893 35 1 5.6592 2.7342 -1.1134 36 1 5.8238 2.4507 0.6387 37 1 6.6692 6.9704 -2.7567 38 1 7.1364 9.3543 -2.4967 39 1 5.8153 11.8226 -2.6097 40 1 7.4461 8.8141 1.7693 41 1 6.9815 6.4315 1.4932 42 1 5.6460 4.7775 2.1524 43 1 5.3917 6.2418 1.1688 44 1 3.2738 5.3399 2.2410 45 1 3.1926 5.4594 0.4665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529895823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:05 Heat of formation + Delta-G solvation = -99.204270 kcal Electronic energy + Delta-G solvation = -26581.334564 eV Core-core repulsion = 22756.968451 eV Total energy + Delta-G solvation = -3824.366113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17710 -38.59244 -37.70485 -37.05400 -34.47173 -33.86100 -32.81460 -31.10119 -30.13380 -29.62066 -28.21379 -26.55066 -25.02796 -23.36154 -22.99327 -21.99738 -21.09495 -20.77600 -18.98824 -17.61641 -17.02813 -16.84413 -16.74175 -15.85341 -15.59923 -15.45859 -15.35626 -14.97494 -14.53733 -14.16279 -14.01496 -13.51287 -13.42413 -13.33248 -12.87203 -12.76368 -12.58213 -12.37388 -12.06323 -11.81214 -11.78746 -11.64690 -11.50730 -11.34428 -11.21796 -11.09399 -10.97857 -10.70010 -10.49255 -10.10729 -9.98419 -9.79216 -9.55647 -9.38587 -9.04844 -8.28729 -7.73179 -7.53136 -6.99614 -4.61836 2.25717 2.89801 2.94457 2.96323 2.99303 3.11406 3.50567 3.65008 3.72841 3.76284 4.46395 4.77439 4.79496 4.84194 4.94194 5.03048 5.07533 5.12328 5.21255 5.27607 5.35202 5.41098 5.47370 5.49808 5.63093 5.66239 5.74366 5.86692 5.88035 5.89088 6.00071 6.07862 6.20289 6.70133 6.80059 6.82717 6.98272 7.00002 7.06528 7.17130 7.40221 7.53620 7.69444 7.82704 7.95112 8.05601 8.40103 8.62261 8.71763 8.83640 9.93125 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002501 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.699136 B =11193.824183 C =11422.743584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.075 3.925 5 C 0.081 3.919 6 H 0.070 0.930 7 C 0.089 3.911 8 N -0.620 5.620 9 C 0.580 3.420 10 O -0.563 6.563 11 C -0.275 4.275 12 C -0.043 4.043 13 C -0.172 4.172 14 C 0.127 3.873 15 C -0.447 4.447 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.777 5.777 19 Si 0.914 3.086 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.230 4.230 24 C -0.063 4.063 25 C 0.057 3.943 26 C 0.047 3.953 27 O -0.372 6.372 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.287 0.713 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -13.296 4.795 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.002 4.002 5 C 0.022 3.978 6 H 0.088 0.912 7 C -0.035 4.035 8 N -0.355 5.355 9 C 0.375 3.625 10 O -0.443 6.443 11 C -0.279 4.279 12 C -0.062 4.062 13 C -0.191 4.191 14 C 0.124 3.876 15 C -0.475 4.475 16 H 0.101 0.899 17 C -0.147 4.147 18 N -0.401 5.401 19 Si 0.738 3.262 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.250 4.250 24 C -0.082 4.082 25 C -0.066 4.066 26 C -0.030 4.030 27 O -0.291 6.291 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.144 0.856 44 H 0.123 0.877 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.485 -13.463 4.247 15.978 hybrid contribution 0.445 0.698 -0.163 0.843 sum -7.040 -12.765 4.084 15.139 Atomic orbital electron populations 1.21737 0.93750 1.02066 1.03275 1.22459 0.95685 0.83935 0.99946 1.87953 1.20463 1.26123 1.95395 1.22390 0.82027 0.94775 1.01052 1.22325 0.93752 0.93012 0.88704 0.91194 1.21887 0.93765 0.83960 1.03845 1.48007 1.50624 1.10809 1.26021 1.18801 0.76277 0.87649 0.79752 1.90649 1.52138 1.68222 1.33288 1.18805 1.23325 0.90815 0.94949 1.20372 0.96689 0.93584 0.95591 1.20988 1.07001 0.93199 0.97937 1.17767 0.85980 0.92922 0.90942 1.19755 1.28089 0.91321 1.08381 0.89864 1.26066 0.93074 1.01864 0.93705 1.69715 1.18485 1.37468 1.14425 0.86256 0.80343 0.80488 0.79115 1.18559 1.20097 1.18733 1.20727 1.13062 0.93570 0.97627 1.20524 0.98062 0.95213 0.94385 1.23028 0.94075 1.01572 0.87916 1.23048 0.95028 0.81935 1.03000 1.87956 1.81819 1.22186 1.37142 0.91756 0.91851 0.91217 0.93507 0.93423 0.91592 0.92259 0.88279 0.91308 0.88720 0.86166 0.90222 0.88312 0.88201 0.91248 0.85551 0.87714 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.38 -4.72 10.31 -39.97 -0.41 -5.14 16 4 C 0.07 0.84 5.61 37.15 0.21 1.04 16 5 C 0.08 1.10 3.04 -26.80 -0.08 1.02 16 6 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 7 C 0.09 1.29 5.89 -3.74 -0.02 1.27 16 8 N -0.62 -10.70 3.03 -173.71 -0.53 -11.22 16 9 C 0.58 12.32 7.36 -12.42 -0.09 12.22 16 10 O -0.56 -13.37 16.41 5.29 0.09 -13.28 16 11 C -0.27 -6.14 5.37 -104.73 -0.56 -6.70 16 12 C -0.04 -1.03 9.56 -39.61 -0.38 -1.41 16 13 C -0.17 -4.31 8.60 -39.27 -0.34 -4.64 16 14 C 0.13 3.17 5.55 -106.80 -0.59 2.57 16 15 C -0.45 -10.97 9.05 -37.74 -0.34 -11.31 16 16 H 0.08 1.93 7.89 -52.49 -0.41 1.52 16 17 C 0.07 1.72 5.18 -17.31 -0.09 1.63 16 18 N -0.78 -18.79 10.97 55.56 0.61 -18.18 16 19 Si 0.91 17.35 29.58 -169.99 -5.03 12.33 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 23 C -0.23 -5.17 9.73 -39.27 -0.38 -5.55 16 24 C -0.06 -1.31 7.27 -39.61 -0.29 -1.60 16 25 C 0.06 0.84 5.15 -3.53 -0.02 0.82 16 26 C 0.05 0.64 6.98 37.31 0.26 0.90 16 27 O -0.37 -5.41 10.35 -39.97 -0.41 -5.83 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.10 1.50 7.11 -51.93 -0.37 1.13 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 2.20 8.05 -52.49 -0.42 1.78 16 38 H 0.12 3.09 6.27 -52.49 -0.33 2.76 16 39 H 0.29 6.29 8.29 -40.82 -0.34 5.96 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.10 1.77 6.00 -52.49 -0.31 1.45 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.13 2.05 4.12 -51.93 -0.21 1.83 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -29.22 366.75 -8.94 -38.16 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.69 Total: 7.40 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.09 Total: -9.77 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 0.08 Total: -29.40 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.74 Total: -24.24 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.22 -8.94 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529895823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.045 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds