Wall clock time and date at job start Tue Mar 31 2020 12:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42891 * 109.47327 * 2 1 4 4 C 1.42897 * 114.00412 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47542 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.51179 * 304.89533 * 5 4 3 7 7 C 1.52880 * 109.62315 * 184.90841 * 5 4 3 8 8 N 1.47159 * 108.60541 * 187.89411 * 7 5 4 9 9 C 1.34775 * 120.98101 * 230.49628 * 8 7 5 10 10 O 1.21586 * 120.00058 * 355.62654 * 9 8 7 11 11 C 1.47639 * 119.99786 * 175.62662 * 9 8 7 12 12 C 1.40013 * 119.89308 * 220.14065 * 11 9 8 13 13 C 1.36319 * 120.10399 * 179.97438 * 12 11 9 14 14 C 1.40884 * 119.89409 * 0.02562 * 13 12 11 15 15 C 1.41113 * 120.10191 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99846 * 207.66994 * 15 14 13 17 17 C 1.40229 * 119.99974 * 27.67740 * 15 14 13 18 18 N 1.30641 * 119.99915 * 14.54852 * 17 15 14 19 19 Si 1.86796 * 119.99571 * 194.55081 * 17 15 14 20 20 H 1.48495 * 109.47344 * 59.99667 * 19 17 15 21 21 H 1.48505 * 109.46811 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47317 * 299.99308 * 19 17 15 23 23 C 1.40885 * 119.79552 * 359.97438 * 14 13 12 24 24 C 1.36317 * 119.88878 * 0.02562 * 23 14 13 25 25 C 1.47156 * 118.03376 * 50.22312 * 8 7 5 26 26 C 1.53294 * 108.38486 * 309.71480 * 25 8 7 27 27 O 1.42958 * 109.51558 * 64.99352 * 5 4 3 28 28 H 1.09009 * 109.46646 * 299.99937 * 1 2 3 29 29 H 1.09001 * 109.47260 * 59.99645 * 1 2 3 30 30 H 1.09001 * 109.47038 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46454 * 239.99947 * 2 1 3 32 32 H 1.08995 * 109.46615 * 120.00141 * 2 1 3 33 33 H 1.08996 * 109.47311 * 59.99451 * 4 3 2 34 34 H 1.09009 * 109.46357 * 300.00164 * 4 3 2 35 35 H 1.08992 * 109.62206 * 68.07163 * 7 5 4 36 36 H 1.09000 * 109.51943 * 307.65394 * 7 5 4 37 37 H 1.08001 * 119.95243 * 359.95981 * 12 11 9 38 38 H 1.08000 * 120.05163 * 179.72608 * 13 12 11 39 39 H 0.97007 * 119.99770 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.05705 * 180.02562 * 23 14 13 41 41 H 1.07998 * 119.94738 * 180.02562 * 24 23 14 42 42 H 1.09002 * 109.67991 * 69.44443 * 25 8 7 43 43 H 1.09002 * 109.67617 * 189.95100 * 25 8 7 44 44 H 1.09003 * 109.50899 * 172.22685 * 26 25 8 45 45 H 1.08994 * 109.51259 * 292.32916 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9382 0.0001 6 1 3.3511 3.4421 -0.8421 7 6 5.3440 3.0644 -0.1237 8 7 5.7153 4.4752 0.0697 9 6 6.5150 5.1090 -0.8107 10 8 7.0053 4.4947 -1.7384 11 6 6.7957 6.5494 -0.6487 12 6 6.8399 7.3826 -1.7731 13 6 7.0982 8.7132 -1.6284 14 6 7.3214 9.2496 -0.3449 15 6 7.5897 10.6264 -0.1901 16 1 8.1781 10.9710 0.6474 17 6 7.0923 11.5469 -1.1237 18 7 6.1591 11.1859 -1.9636 19 14 7.7641 13.2894 -1.1662 20 1 9.2227 13.2510 -1.4422 21 1 7.0784 14.0583 -2.2357 22 1 7.5256 13.9440 0.1452 23 6 7.2760 8.4073 0.7835 24 6 7.0170 7.0780 0.6288 25 6 5.1826 5.1751 1.2494 26 6 3.6676 4.9476 1.3034 27 8 3.3989 3.5458 1.2218 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8334 0.9766 -0.8907 34 1 3.8340 0.9763 0.8893 35 1 5.6592 2.7342 -1.1134 36 1 5.8238 2.4507 0.6387 37 1 6.6692 6.9704 -2.7567 38 1 7.1364 9.3543 -2.4967 39 1 5.8153 11.8226 -2.6097 40 1 7.4461 8.8141 1.7693 41 1 6.9815 6.4315 1.4932 42 1 5.6460 4.7775 2.1524 43 1 5.3917 6.2418 1.1688 44 1 3.2738 5.3399 2.2410 45 1 3.1926 5.4594 0.4665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529895823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:04 Heat of formation + Delta-G solvation = -116.176723 kcal Electronic energy + Delta-G solvation = -26582.070545 eV Core-core repulsion = 22756.968451 eV Total energy + Delta-G solvation = -3825.102094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57118 -39.90689 -38.91276 -38.55888 -35.97692 -35.51655 -33.83576 -32.13036 -31.79404 -31.28021 -29.45370 -28.05846 -26.41648 -24.61928 -23.66421 -23.46018 -22.86057 -22.12021 -20.49427 -19.39288 -18.30236 -18.05697 -17.75113 -17.23950 -17.05653 -16.57482 -16.53907 -16.17599 -15.94735 -15.67616 -15.43854 -14.99822 -14.65930 -14.38060 -14.25844 -14.08798 -14.01769 -13.70534 -13.46927 -13.35292 -12.98641 -12.81863 -12.78049 -12.61226 -12.41953 -12.30013 -12.26535 -11.97806 -11.79414 -11.73223 -11.37710 -11.21116 -11.12103 -10.70660 -10.57763 -9.68938 -9.53620 -9.32086 -8.74690 -6.47356 0.49486 1.09814 1.38952 1.44500 1.51885 1.77703 2.00855 2.17252 2.56288 2.70311 2.73651 3.62622 3.71191 3.75677 3.87054 3.97638 4.01635 4.18392 4.18466 4.31970 4.35718 4.37669 4.40240 4.44421 4.46258 4.51787 4.55515 4.71887 4.80501 4.86607 4.91419 4.96533 5.02773 5.04589 5.16747 5.24830 5.27533 5.42192 5.58690 5.74847 5.93809 6.00319 6.04749 6.19718 6.25791 6.36358 6.56277 6.79049 6.88794 7.20431 8.20563 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002501 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.699136 B =11193.824183 C =11422.743584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.077 3.923 5 C 0.084 3.916 6 H 0.050 0.950 7 C 0.089 3.911 8 N -0.615 5.615 9 C 0.577 3.423 10 O -0.597 6.597 11 C -0.282 4.282 12 C -0.056 4.056 13 C -0.193 4.193 14 C 0.100 3.900 15 C -0.476 4.476 16 H 0.090 0.910 17 C 0.033 3.967 18 N -0.810 5.810 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.238 4.238 24 C -0.048 4.048 25 C 0.055 3.945 26 C 0.049 3.951 27 O -0.377 6.377 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.293 0.707 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 -14.264 6.853 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.329 6.329 4 C 0.001 3.999 5 C 0.025 3.975 6 H 0.068 0.932 7 C -0.034 4.034 8 N -0.348 5.348 9 C 0.372 3.628 10 O -0.480 6.480 11 C -0.286 4.286 12 C -0.075 4.075 13 C -0.212 4.212 14 C 0.097 3.903 15 C -0.504 4.504 16 H 0.108 0.892 17 C -0.184 4.184 18 N -0.434 5.434 19 Si 0.807 3.193 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.177 1.177 23 C -0.257 4.257 24 C -0.066 4.066 25 C -0.067 4.067 26 C -0.028 4.028 27 O -0.296 6.296 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.116 0.884 43 H 0.131 0.869 44 H 0.153 0.847 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.817 -14.461 6.341 17.620 hybrid contribution 0.452 0.864 -0.778 1.248 sum -7.365 -13.597 5.562 16.434 Atomic orbital electron populations 1.21771 0.93153 1.03376 1.02456 1.22693 0.96255 0.82601 1.01151 1.87911 1.20955 1.28354 1.95650 1.22402 0.81945 0.92951 1.02639 1.22316 0.92754 0.94591 0.87828 0.93216 1.22062 0.94650 0.82391 1.04275 1.48012 1.49077 1.12012 1.25651 1.18620 0.76902 0.87217 0.80110 1.90626 1.53829 1.68717 1.34794 1.19040 1.22790 0.91632 0.95131 1.20445 0.97192 0.93641 0.96215 1.20895 1.08963 0.93466 0.97882 1.18125 0.86689 0.93967 0.91525 1.20057 1.29069 0.91698 1.09571 0.89155 1.26947 0.92765 1.05889 0.92830 1.69778 1.19446 1.39135 1.15060 0.85164 0.79385 0.75232 0.79520 1.18446 1.19396 1.17741 1.20979 1.12853 0.94102 0.97767 1.20807 0.95887 0.95072 0.94868 1.23180 0.95153 1.00665 0.87726 1.23113 0.93991 0.81677 1.03986 1.87965 1.81831 1.22443 1.37342 0.92566 0.92661 0.88859 0.92219 0.92207 0.89819 0.90773 0.89146 0.88815 0.89339 0.87937 0.89582 0.86361 0.84486 0.88429 0.86899 0.84747 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.99 0.74 -1.34 16 2 C 0.05 0.77 6.66 71.99 0.48 1.25 16 3 O -0.41 -9.50 10.31 -144.45 -1.49 -10.99 16 4 C 0.08 1.56 5.61 71.98 0.40 1.97 16 5 C 0.08 2.16 3.04 30.55 0.09 2.25 16 6 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 7 C 0.09 2.42 5.89 86.21 0.51 2.93 16 8 N -0.61 -20.32 3.03 -821.76 -2.49 -22.81 16 9 C 0.58 24.41 7.36 86.73 0.64 25.05 16 10 O -0.60 -28.67 16.41 -3.99 -0.07 -28.74 16 11 C -0.28 -12.66 5.37 -19.93 -0.11 -12.77 16 12 C -0.06 -2.76 9.56 22.25 0.21 -2.55 16 13 C -0.19 -10.09 8.60 22.47 0.19 -9.90 16 14 C 0.10 5.09 5.55 -21.28 -0.12 4.97 16 15 C -0.48 -23.68 9.05 23.46 0.21 -23.47 16 16 H 0.09 4.20 7.89 -2.91 -0.02 4.18 16 17 C 0.03 1.57 5.18 85.35 0.44 2.01 16 18 N -0.81 -40.26 10.97 21.87 0.24 -40.02 16 19 Si 0.99 35.44 29.58 68.60 2.03 37.47 16 20 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 21 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 22 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 23 C -0.24 -10.54 9.73 22.47 0.22 -10.32 16 24 C -0.05 -1.94 7.27 22.25 0.16 -1.77 16 25 C 0.05 1.48 5.15 86.35 0.44 1.92 16 26 C 0.05 1.23 6.98 72.08 0.50 1.74 16 27 O -0.38 -10.12 10.35 -144.45 -1.50 -11.61 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.09 2.66 7.11 -2.39 -0.02 2.64 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 4.37 8.05 -2.91 -0.02 4.35 16 38 H 0.10 5.61 6.27 -2.91 -0.02 5.59 16 39 H 0.29 13.18 8.29 -92.70 -0.77 12.41 16 40 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.14 4.44 6.00 -2.91 -0.02 4.42 16 42 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.11 3.42 4.12 -2.39 -0.01 3.41 16 44 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -64.82 366.75 2.75 -62.08 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.99 Total: 32.65 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 5.03 Total: -18.03 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -2.25 Total: -62.83 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -3.05 Total: -51.34 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Total: -64.82 2.75 -62.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529895823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.099 kcal (2) G-P(sol) polarization free energy of solvation -64.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds