Wall clock time and date at job start Tue Mar 31 2020 12:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42897 * 109.47251 * 2 1 4 4 C 1.42906 * 113.99872 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46961 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.50801 * 55.00097 * 5 4 3 7 7 C 1.53289 * 109.51210 * 175.10256 * 5 4 3 8 8 N 1.47166 * 108.37820 * 172.17304 * 7 5 4 9 9 C 1.34778 * 120.94469 * 129.52235 * 8 7 5 10 10 O 1.21552 * 119.99720 * 354.66017 * 9 8 7 11 11 C 1.47879 * 120.00254 * 174.65343 * 9 8 7 12 12 C 1.39922 * 120.02419 * 147.27531 * 11 9 8 13 13 C 1.38332 * 120.35689 * 180.02562 * 12 11 9 14 14 C 1.37749 * 120.41372 * 359.97157 * 13 12 11 15 15 C 1.40749 * 120.04201 * 0.02562 * 14 13 12 16 16 C 1.41433 * 120.18350 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00496 * 156.50602 * 16 15 14 18 18 C 1.39940 * 119.99513 * 336.50368 * 16 15 14 19 19 N 1.30826 * 120.00288 * 343.51316 * 18 16 15 20 20 Si 1.86803 * 119.99956 * 163.50813 * 18 16 15 21 21 H 1.48501 * 109.46893 * 94.96043 * 20 18 16 22 22 H 1.48500 * 109.47456 * 214.96546 * 20 18 16 23 23 H 1.48503 * 109.46974 * 334.96665 * 20 18 16 24 24 C 1.38990 * 120.02663 * 327.00313 * 11 9 8 25 25 C 1.47151 * 118.07625 * 309.55246 * 8 7 5 26 26 C 1.53302 * 108.38476 * 50.49813 * 25 8 7 27 27 O 1.42959 * 109.51097 * 294.90032 * 5 4 3 28 28 H 1.08998 * 109.47611 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47027 * 300.00025 * 1 2 3 30 30 H 1.09003 * 109.47571 * 59.99735 * 1 2 3 31 31 H 1.09005 * 109.47270 * 240.00415 * 2 1 3 32 32 H 1.09003 * 109.47571 * 120.00265 * 2 1 3 33 33 H 1.08994 * 109.47325 * 300.00133 * 4 3 2 34 34 H 1.08994 * 109.46824 * 60.00612 * 4 3 2 35 35 H 1.09001 * 109.68349 * 291.94913 * 7 5 4 36 36 H 1.09004 * 109.68310 * 52.50625 * 7 5 4 37 37 H 1.08000 * 119.81952 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.78979 * 179.97438 * 13 12 11 39 39 H 1.07999 * 119.97910 * 179.97438 * 14 13 12 40 40 H 0.97000 * 120.00387 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.20485 * 359.97438 * 24 11 9 42 42 H 1.08999 * 109.68400 * 290.77358 * 25 8 7 43 43 H 1.08998 * 109.68214 * 170.21673 * 25 8 7 44 44 H 1.09002 * 109.50881 * 187.77918 * 26 25 8 45 45 H 1.08995 * 109.51234 * 67.62286 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.3496 3.4417 0.8428 7 6 5.3483 3.0617 0.1252 8 7 5.7165 4.4737 -0.0659 9 6 6.5161 5.1068 0.8152 10 8 6.8651 4.5424 1.8336 11 6 6.9689 6.4880 0.5430 12 6 7.1741 7.3790 1.6022 13 6 7.5972 8.6728 1.3554 14 6 7.8218 9.0988 0.0648 15 6 7.6208 8.2167 -1.0134 16 6 7.8511 8.6508 -2.3397 17 1 8.0710 7.9301 -3.1133 18 6 7.7940 10.0143 -2.6494 19 7 7.2234 10.8501 -1.8203 20 14 8.5325 10.6410 -4.2467 21 1 7.4725 10.7226 -5.2835 22 1 9.1153 11.9891 -4.0273 23 1 9.5967 9.7093 -4.6991 24 6 7.1964 6.9003 -0.7646 25 6 5.1858 5.1742 -1.2462 26 6 3.6706 4.9479 -1.3021 27 8 3.4009 3.5463 -1.2210 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.8333 0.9766 0.8907 34 1 3.8339 0.9764 -0.8892 35 1 5.6643 2.7297 1.1141 36 1 5.8296 2.4511 -0.6388 37 1 7.0005 7.0552 2.6177 38 1 7.7523 9.3530 2.1798 39 1 8.1516 10.1105 -0.1198 40 1 7.1835 11.7952 -2.0351 41 1 7.0440 6.2145 -1.5850 42 1 5.6499 4.7765 -2.1487 43 1 5.3949 6.2409 -1.1648 44 1 3.2783 5.3405 -2.2402 45 1 3.1950 5.4593 -0.4652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529896418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:12 Heat of formation + Delta-G solvation = -114.441428 kcal Electronic energy + Delta-G solvation = -26780.399081 eV Core-core repulsion = 22955.372235 eV Total energy + Delta-G solvation = -3825.026846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65378 -39.91616 -38.87357 -38.58510 -35.92297 -35.53882 -33.86144 -32.09336 -31.80422 -31.29902 -29.41198 -27.27700 -26.93646 -24.73996 -23.74948 -23.65713 -22.63606 -22.18180 -20.78355 -19.10292 -18.11296 -17.84524 -17.77040 -17.37512 -16.74762 -16.64615 -16.55802 -16.52465 -16.04041 -15.83369 -15.39120 -15.00002 -14.75072 -14.40918 -14.35472 -14.10239 -14.08027 -13.52082 -13.46335 -13.22935 -12.84801 -12.82047 -12.69689 -12.55985 -12.43322 -12.27560 -12.23329 -12.02356 -11.95804 -11.74006 -11.39547 -11.23442 -11.05232 -10.78771 -10.57123 -9.73937 -9.45954 -9.37098 -8.64254 -6.37057 0.41339 0.91235 1.43037 1.49026 1.57143 1.72032 1.95087 2.22522 2.55979 2.71402 2.73588 3.56369 3.64742 3.72277 3.85974 3.96233 3.96626 4.16260 4.18735 4.33225 4.36860 4.38455 4.42420 4.45706 4.52016 4.53213 4.55277 4.71685 4.79032 4.85990 4.90775 4.93382 5.02537 5.05077 5.13602 5.27408 5.28230 5.34575 5.52211 5.77749 5.97984 6.01027 6.03992 6.18253 6.24286 6.26293 6.60438 6.88695 6.92191 7.04688 8.31383 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018793 B = 0.002912 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.521787 B = 9612.014789 C =10581.365183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.077 3.923 5 C 0.084 3.916 6 H 0.055 0.945 7 C 0.087 3.913 8 N -0.609 5.609 9 C 0.569 3.431 10 O -0.580 6.580 11 C -0.119 4.119 12 C -0.193 4.193 13 C -0.111 4.111 14 C -0.164 4.164 15 C 0.075 3.925 16 C -0.485 4.485 17 H 0.083 0.917 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.270 1.270 23 H -0.259 1.259 24 C -0.195 4.195 25 C 0.057 3.943 26 C 0.052 3.948 27 O -0.377 6.377 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.290 0.710 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 -14.422 -1.763 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.328 6.328 4 C 0.000 4.000 5 C 0.025 3.975 6 H 0.073 0.927 7 C -0.036 4.036 8 N -0.341 5.341 9 C 0.360 3.640 10 O -0.462 6.462 11 C -0.122 4.122 12 C -0.213 4.213 13 C -0.130 4.130 14 C -0.184 4.184 15 C 0.073 3.927 16 C -0.514 4.514 17 H 0.102 0.898 18 C -0.178 4.178 19 N -0.446 5.446 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.215 4.215 25 C -0.065 4.065 26 C -0.025 4.025 27 O -0.296 6.296 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.933 -14.433 -1.361 17.028 hybrid contribution 0.636 0.683 -0.138 0.943 sum -8.298 -13.750 -1.498 16.129 Atomic orbital electron populations 1.21767 0.93160 1.03363 1.02466 1.22690 0.96247 0.82614 1.01144 1.87912 1.20932 1.28327 1.95653 1.22413 0.81970 0.92938 1.02673 1.22418 0.92594 0.94645 0.87848 0.92699 1.22237 0.94939 0.81764 1.04612 1.47991 1.48667 1.12214 1.25247 1.18792 0.77218 0.86274 0.81673 1.90640 1.59068 1.68670 1.27807 1.19469 1.05298 0.92365 0.95087 1.20578 1.09737 0.94237 0.96786 1.20894 1.00111 0.95195 0.96775 1.21628 1.04111 1.00853 0.91804 1.17896 0.89243 0.91454 0.94143 1.19812 1.43583 0.93278 0.94718 0.89847 1.26715 0.92457 0.96642 1.01982 1.69834 1.31436 1.05548 1.37796 0.85213 0.79324 0.78109 0.77273 1.18629 1.19487 1.18320 1.21512 1.08149 0.97687 0.94110 1.23157 0.95243 1.00466 0.87613 1.23100 0.93536 0.81795 1.04064 1.87976 1.81792 1.22345 1.37500 0.88895 0.92561 0.92636 0.92344 0.92107 0.89576 0.90956 0.88449 0.88743 0.87912 0.86427 0.86803 0.89956 0.85820 0.89135 0.87218 0.85105 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.41 -9.38 10.31 -144.55 -1.49 -10.87 16 4 C 0.08 1.53 5.61 71.98 0.40 1.94 16 5 C 0.08 2.13 3.06 30.69 0.09 2.22 16 6 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 7 C 0.09 2.35 5.94 86.35 0.51 2.86 16 8 N -0.61 -20.48 3.02 -820.67 -2.48 -22.95 16 9 C 0.57 23.69 7.42 86.80 0.64 24.34 16 10 O -0.58 -26.64 16.23 -3.88 -0.06 -26.70 16 11 C -0.12 -5.37 5.36 -20.14 -0.11 -5.47 16 12 C -0.19 -8.87 9.61 22.70 0.22 -8.65 16 13 C -0.11 -5.11 10.01 22.18 0.22 -4.89 16 14 C -0.16 -8.23 8.70 22.77 0.20 -8.03 16 15 C 0.07 3.76 5.59 -21.32 -0.12 3.64 16 16 C -0.48 -23.81 9.06 23.47 0.21 -23.60 16 17 H 0.08 3.89 7.90 -2.92 -0.02 3.86 16 18 C 0.04 1.75 5.18 85.25 0.44 2.19 16 19 N -0.82 -39.84 10.80 21.83 0.24 -39.60 16 20 Si 0.98 35.40 29.59 68.60 2.03 37.43 16 21 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 22 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 24 C -0.19 -8.80 7.13 23.01 0.16 -8.64 16 25 C 0.06 1.73 4.90 86.36 0.42 2.15 16 26 C 0.05 1.38 6.99 72.08 0.50 1.89 16 27 O -0.38 -10.41 10.35 -144.55 -1.50 -11.91 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 2.73 7.06 -2.39 -0.02 2.72 16 36 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.10 4.54 7.96 -2.91 -0.02 4.51 16 38 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 39 H 0.11 5.90 6.01 -2.91 -0.02 5.89 16 40 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 41 H 0.12 5.04 5.72 -2.91 -0.02 5.02 16 42 H 0.09 2.47 7.94 -2.39 -0.02 2.45 16 43 H 0.11 3.86 4.57 -2.39 -0.01 3.85 16 44 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -61.83 366.19 2.75 -59.07 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.99 Total: 33.67 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 5.03 Total: -18.13 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -2.24 Total: -62.56 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -3.05 Total: -49.49 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -61.83 2.75 -59.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529896418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.371 kcal (2) G-P(sol) polarization free energy of solvation -61.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds