Wall clock time and date at job start Tue Mar 31 2020 13:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.47248 * 2 1 4 4 C 1.34225 * 117.00060 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00226 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99961 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47166 * 59.99885 * 6 4 3 8 8 C 1.53008 * 109.46975 * 300.00195 * 6 4 3 9 9 C 1.52999 * 109.47178 * 180.02562 * 6 4 3 10 10 C 1.50701 * 109.47178 * 179.97438 * 9 6 4 11 11 O 1.21284 * 119.99714 * 359.97438 * 10 9 6 12 12 N 1.34772 * 120.00105 * 179.97438 * 10 9 6 13 13 C 1.39236 * 120.00186 * 184.28942 * 12 10 9 14 14 C 1.39488 * 119.83386 * 324.71491 * 13 12 10 15 15 C 1.36375 * 120.16715 * 180.29696 * 14 13 12 16 16 C 1.40869 * 119.83138 * 359.47543 * 15 14 13 17 17 C 1.41149 * 120.16828 * 180.25432 * 16 15 14 18 18 H 1.07997 * 119.99820 * 215.02350 * 17 16 15 19 19 C 1.39907 * 119.99984 * 35.01016 * 17 16 15 20 20 N 1.30873 * 119.99700 * 355.55677 * 19 17 16 21 21 Si 1.86795 * 120.00261 * 175.54799 * 19 17 16 22 22 H 1.48497 * 109.47095 * 90.00251 * 21 19 17 23 23 H 1.48499 * 109.47368 * 210.00891 * 21 19 17 24 24 H 1.48505 * 109.46953 * 330.00632 * 21 19 17 25 25 C 1.40878 * 119.66676 * 0.51992 * 16 15 14 26 26 C 1.36371 * 119.82935 * 359.73410 * 25 16 15 27 27 H 1.08994 * 109.47128 * 59.99980 * 1 2 3 28 28 H 1.09005 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46727 * 299.99630 * 1 2 3 30 30 H 1.09006 * 109.47388 * 240.00194 * 2 1 3 31 31 H 1.09001 * 109.47771 * 120.00162 * 2 1 3 32 32 H 1.08997 * 109.47033 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47089 * 300.00549 * 7 6 4 34 34 H 1.08996 * 109.46943 * 60.00337 * 7 6 4 35 35 H 1.08997 * 109.46797 * 299.99820 * 8 6 4 36 36 H 1.08997 * 109.47016 * 59.99612 * 8 6 4 37 37 H 1.09004 * 109.46584 * 179.97438 * 8 6 4 38 38 H 1.08997 * 109.47495 * 59.99629 * 9 6 4 39 39 H 1.09005 * 109.46934 * 299.99519 * 9 6 4 40 40 H 0.96994 * 119.99896 * 4.29500 * 12 10 9 41 41 H 1.07997 * 119.91319 * 0.02562 * 14 13 12 42 42 H 1.07998 * 120.08370 * 179.70579 * 15 14 13 43 43 H 0.97006 * 119.99653 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.08169 * 179.70806 * 25 16 15 45 45 H 1.08000 * 119.91148 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4498 3.6837 1.2499 8 6 3.4485 3.6851 -1.2486 9 6 5.4486 2.8574 -0.0014 10 6 6.0246 4.2499 -0.0015 11 8 5.2858 5.2118 -0.0010 12 7 7.3607 4.4265 -0.0021 13 6 7.8934 5.7098 0.0880 14 6 7.2392 6.7775 -0.5267 15 6 7.7581 8.0362 -0.4479 16 6 8.9521 8.2585 0.2659 17 6 9.4926 9.5592 0.3565 18 1 10.5634 9.6997 0.3640 19 6 8.6412 10.6665 0.4364 20 7 7.3462 10.5045 0.3396 21 14 9.3528 12.3762 0.6814 22 1 9.6247 12.9934 -0.6415 23 1 8.3811 13.2145 1.4285 24 1 10.6185 12.2797 1.4521 25 6 9.6070 7.1751 0.8840 26 6 9.0787 5.9213 0.7920 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8660 4.6910 1.2501 33 1 2.3613 3.7406 1.2505 34 1 3.7862 3.1510 2.1394 35 1 3.7840 3.1535 -2.1390 36 1 2.3600 3.7421 -1.2480 37 1 3.8648 4.6926 -1.2479 38 1 5.7838 2.3259 -0.8920 39 1 5.7854 2.3246 0.8880 40 1 7.9512 3.6597 -0.0655 41 1 6.3217 6.6061 -1.0700 42 1 7.2530 8.8611 -0.9283 43 1 6.7559 11.2723 0.3945 44 1 10.5253 7.3372 1.4289 45 1 9.5795 5.0898 1.2657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553965595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:53 Heat of formation + Delta-G solvation = -125.750380 kcal Electronic energy + Delta-G solvation = -26468.401540 eV Core-core repulsion = 22642.884302 eV Total energy + Delta-G solvation = -3825.517239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09617 -41.11929 -39.26425 -37.87050 -36.72937 -35.82192 -34.67340 -32.56018 -31.45870 -31.07628 -29.23356 -28.33239 -26.56376 -25.57030 -23.65173 -23.22767 -22.76594 -21.42484 -20.54114 -19.20268 -18.52631 -18.17783 -18.04562 -17.60753 -17.01260 -16.71121 -16.43790 -15.75211 -15.44963 -15.30814 -15.10063 -14.88679 -14.53225 -14.33278 -14.16263 -13.87738 -13.67134 -13.60441 -13.45254 -13.13652 -12.97659 -12.90494 -12.81989 -12.70817 -12.51956 -12.43757 -12.27064 -12.05956 -12.04487 -11.70146 -11.66014 -11.52054 -11.40580 -11.09909 -10.60433 -10.29207 -9.41052 -8.70574 -8.47628 -6.30168 0.83923 1.08136 1.16583 1.39708 1.45138 1.51503 1.54162 1.81771 2.24769 2.44470 2.84143 3.32110 3.69776 3.71874 3.74799 3.91337 4.01307 4.07931 4.12217 4.34843 4.46545 4.51533 4.54621 4.55236 4.76673 4.79731 4.84948 4.85731 4.92644 4.94891 5.04487 5.13647 5.15715 5.20036 5.34000 5.36558 5.39295 5.43330 5.52876 5.74436 5.90735 6.12728 6.18632 6.39315 6.64170 6.72851 6.76076 6.98948 7.05263 7.44340 8.45158 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.002412 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.366936 B =11604.664337 C =12254.122647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.482 3.518 5 O -0.530 6.530 6 C -0.032 4.032 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.112 4.112 10 C 0.504 3.496 11 O -0.549 6.549 12 N -0.645 5.645 13 C 0.024 3.976 14 C -0.105 4.105 15 C -0.168 4.168 16 C 0.063 3.937 17 C -0.497 4.497 18 H 0.077 0.923 19 C 0.022 3.978 20 N -0.845 5.845 21 Si 0.989 3.011 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.210 4.210 26 C -0.110 4.110 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.418 0.582 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.282 0.718 44 H 0.109 0.891 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 -18.513 -0.596 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.325 3.675 5 O -0.420 6.420 6 C -0.034 4.034 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.152 4.152 10 C 0.293 3.707 11 O -0.428 6.428 12 N -0.290 5.290 13 C -0.069 4.069 14 C -0.125 4.125 15 C -0.188 4.188 16 C 0.061 3.939 17 C -0.528 4.528 18 H 0.095 0.905 19 C -0.189 4.189 20 N -0.473 5.473 21 Si 0.810 3.190 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.230 4.230 26 C -0.130 4.130 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.255 0.745 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.558 -18.072 -0.581 20.938 hybrid contribution 0.490 0.437 0.086 0.662 sum -10.068 -17.635 -0.496 20.313 Atomic orbital electron populations 1.21829 0.90569 1.04378 1.03650 1.23338 0.97042 0.79116 1.02733 1.86519 1.23637 1.33793 1.83293 1.23651 0.80914 0.91912 0.70974 1.90633 1.60936 1.43664 1.46724 1.20148 0.94052 0.88663 1.00528 1.22049 1.02553 1.01855 0.94158 1.22058 1.02565 1.01886 0.94100 1.21513 0.93366 0.93133 1.07187 1.20907 0.82048 0.91894 0.75854 1.90611 1.58848 1.43754 1.49600 1.42913 1.06932 1.07167 1.72034 1.17329 0.97891 0.84881 1.06816 1.20680 0.99093 0.92856 0.99829 1.21178 0.99535 0.95538 1.02534 1.18070 0.92525 0.93640 0.89649 1.19738 0.94642 0.91494 1.46934 0.90501 1.26810 0.94825 1.05131 0.92129 1.69902 1.04801 1.33683 1.38944 0.85100 0.78892 0.75772 0.79262 1.18735 1.19728 1.18108 1.20936 1.03035 0.93225 1.05839 1.20443 0.96178 0.97135 0.99283 0.91375 0.88068 0.91423 0.91076 0.91128 0.90205 0.90739 0.92180 0.91988 0.90766 0.90060 0.86463 0.86622 0.74509 0.87734 0.87752 0.90781 0.87300 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 71.98 0.74 -0.71 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -7.39 10.02 -51.37 -0.51 -7.91 16 4 C 0.48 11.20 6.55 71.24 0.47 11.66 16 5 O -0.53 -13.97 15.73 21.98 0.35 -13.62 16 6 C -0.03 -0.76 0.71 -52.92 -0.04 -0.80 16 7 C -0.15 -3.67 8.11 71.98 0.58 -3.08 16 8 C -0.15 -3.57 8.11 71.98 0.58 -2.99 16 9 C -0.11 -2.56 4.06 29.85 0.12 -2.44 16 10 C 0.50 15.59 7.07 87.66 0.62 16.21 16 11 O -0.55 -21.19 8.77 -3.04 -0.03 -21.21 16 12 N -0.65 -20.16 5.30 -303.11 -1.61 -21.76 16 13 C 0.02 1.01 6.31 38.57 0.24 1.26 16 14 C -0.10 -5.14 8.61 22.14 0.19 -4.95 16 15 C -0.17 -9.25 8.61 22.48 0.19 -9.06 16 16 C 0.06 3.48 5.55 -21.27 -0.12 3.36 16 17 C -0.50 -27.27 9.02 23.39 0.21 -27.06 16 18 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 19 C 0.02 1.17 5.42 85.24 0.46 1.63 16 20 N -0.85 -46.71 10.61 21.82 0.23 -46.48 16 21 Si 0.99 39.80 29.56 68.60 2.03 41.83 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 25 C -0.21 -10.00 9.74 22.48 0.22 -9.78 16 26 C -0.11 -4.52 9.90 22.13 0.22 -4.30 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.06 8.13 -2.38 -0.02 1.04 16 31 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.08 2.46 5.52 -2.39 -0.01 2.45 16 33 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.61 8.11 -2.39 -0.02 1.59 16 37 H 0.08 2.42 5.51 -2.38 -0.01 2.40 16 38 H 0.12 2.29 8.10 -2.39 -0.02 2.27 16 39 H 0.12 2.32 8.10 -2.38 -0.02 2.30 16 40 H 0.42 9.50 8.82 -92.71 -0.82 8.69 16 41 H 0.10 5.13 6.22 -2.91 -0.02 5.12 16 42 H 0.10 6.19 6.15 -2.91 -0.02 6.17 16 43 H 0.28 14.27 8.30 -92.70 -0.77 13.51 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 45 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -67.66 369.44 5.79 -61.87 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.19 Total: 37.10 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 5.14 Total: -29.81 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: -1.38 Total: -68.24 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.20 Total: -42.75 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -67.66 5.79 -61.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553965595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.880 kcal (2) G-P(sol) polarization free energy of solvation -67.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds