Wall clock time and date at job start Tue Mar 31 2020 12:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42893 * 109.47030 * 2 1 4 4 C 1.42900 * 113.99928 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47586 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47362 * 54.99244 * 5 4 3 7 7 C 1.53006 * 109.46623 * 294.99796 * 5 4 3 8 8 C 1.52997 * 109.47317 * 174.99976 * 5 4 3 9 9 S 1.81401 * 109.47024 * 184.99583 * 8 5 4 10 10 O 1.42095 * 110.54700 * 291.62723 * 9 8 5 11 11 O 1.42110 * 110.53918 * 68.37627 * 9 8 5 12 12 N 1.65594 * 104.45000 * 179.97438 * 9 8 5 13 13 C 1.46929 * 120.63453 * 269.72497 * 12 9 8 14 14 C 1.53620 * 108.54776 * 126.36666 * 13 12 9 15 15 C 1.53048 * 109.23956 * 54.85606 * 14 13 12 16 16 C 1.50705 * 109.44451 * 178.50009 * 15 14 13 17 17 H 1.08000 * 119.99742 * 120.06523 * 16 15 14 18 18 C 1.37877 * 119.99779 * 300.05953 * 16 15 14 19 19 N 1.31510 * 120.00117 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99662 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47358 * 59.99514 * 20 18 16 22 22 H 1.48497 * 109.46949 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46724 * 299.99476 * 20 18 16 24 24 C 1.53043 * 109.53511 * 298.51118 * 15 14 13 25 25 C 1.46924 * 120.62972 * 90.00245 * 12 9 8 26 26 H 1.08997 * 109.47697 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46943 * 299.99942 * 1 2 3 28 28 H 1.08998 * 109.47264 * 59.99759 * 1 2 3 29 29 H 1.09002 * 109.46589 * 240.00052 * 2 1 3 30 30 H 1.08997 * 109.46784 * 120.00015 * 2 1 3 31 31 H 1.09001 * 109.47333 * 59.99585 * 4 3 2 32 32 H 1.09007 * 109.46855 * 299.99803 * 4 3 2 33 33 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00075 * 7 5 4 35 35 H 1.09000 * 109.47050 * 59.99904 * 7 5 4 36 36 H 1.09000 * 109.46875 * 304.99500 * 8 5 4 37 37 H 1.08998 * 109.47192 * 64.99903 * 8 5 4 38 38 H 1.09005 * 109.58408 * 246.20129 * 13 12 9 39 39 H 1.09004 * 109.58580 * 6.62427 * 13 12 9 40 40 H 1.08999 * 109.63163 * 294.86829 * 14 13 12 41 41 H 1.08994 * 109.43446 * 174.72598 * 14 13 12 42 42 H 1.08995 * 109.45504 * 58.53499 * 15 14 13 43 43 H 0.97003 * 119.99951 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.49768 * 301.41126 * 24 15 14 45 45 H 1.09003 * 109.51406 * 181.33212 * 24 15 14 46 46 H 1.09001 * 109.58910 * 353.37159 * 25 12 9 47 47 H 1.09001 * 109.58854 * 113.65670 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3500 3.4409 0.8424 7 6 3.3674 3.5889 -1.3068 8 6 5.3454 3.0604 0.1252 9 16 5.8013 4.8098 0.2746 10 8 5.5482 5.4968 -0.9432 11 8 5.3585 5.3360 1.5182 12 7 7.4523 4.7972 0.4017 13 6 8.1013 4.7156 1.7174 14 6 9.0884 3.5387 1.7031 15 6 10.0600 3.7095 0.5329 16 6 11.0537 2.5765 0.5365 17 1 11.1229 1.9163 -0.3155 18 6 11.8745 2.3829 1.6272 19 7 11.7900 3.1866 2.6647 20 14 13.1068 0.9789 1.6313 21 1 14.0506 1.1454 0.4970 22 1 13.8621 0.9870 2.9098 23 1 12.3866 -0.3121 1.4906 24 6 9.2810 3.7004 -0.7844 25 6 8.2961 4.8736 -0.7986 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.6481 4.6422 -1.3061 34 1 3.8428 3.0863 -2.1490 35 1 2.2845 3.5019 -1.3959 36 1 5.6816 2.5204 1.0104 37 1 5.8182 2.6361 -0.7606 38 1 8.6372 5.6432 1.9186 39 1 7.3471 4.5525 2.4873 40 1 8.5412 2.6031 1.5880 41 1 9.6461 3.5217 2.6395 42 1 10.5890 4.6569 0.6356 43 1 12.3677 3.0506 3.4320 44 1 8.7321 2.7633 -0.8760 45 1 9.9756 3.7983 -1.6188 46 1 7.6706 4.8147 -1.6894 47 1 8.8457 5.8149 -0.7997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560291115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:28 Heat of formation + Delta-G solvation = -139.573073 kcal Electronic energy + Delta-G solvation = -26165.330445 eV Core-core repulsion = 22474.657760 eV Total energy + Delta-G solvation = -3690.672684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.62383 -37.75370 -36.98089 -35.88346 -35.48331 -33.45423 -31.39246 -30.89693 -30.08955 -27.67861 -26.36427 -25.76906 -23.05120 -22.54361 -22.34549 -20.82835 -19.39362 -18.41512 -17.59118 -17.09904 -16.51020 -16.30524 -15.96211 -15.81817 -14.86531 -14.78850 -14.59481 -14.02772 -13.77159 -13.45893 -13.22331 -13.12948 -12.92841 -12.83591 -12.78341 -12.62996 -12.17945 -12.10284 -11.88631 -11.83822 -11.65981 -11.49921 -11.36386 -11.18309 -11.12490 -10.98036 -10.90746 -10.71831 -10.43951 -10.36525 -10.09396 -9.84461 -9.63325 -9.23958 -9.02005 -8.44317 -8.26437 -6.05005 -4.11907 0.43284 2.87736 3.26476 3.32269 3.34191 3.35585 4.01850 4.24053 4.37779 4.44713 4.58865 4.68416 4.74660 4.93713 5.06080 5.07923 5.12113 5.19625 5.24521 5.34451 5.39382 5.47005 5.54501 5.61733 5.71432 5.76362 5.80005 5.87609 5.94054 6.06849 6.12788 6.16359 6.31559 6.39009 6.41810 6.68978 6.86762 6.93791 7.03401 7.13027 7.37427 7.66501 7.90529 8.03751 8.37476 8.91741 9.53292 11.00226 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.003427 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.029508 B = 8168.560038 C = 9373.917793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.388 6.388 4 C 0.075 3.925 5 C -0.076 4.076 6 H 0.091 0.909 7 C -0.175 4.175 8 C -0.633 4.633 9 S 2.612 3.388 10 O -0.958 6.958 11 O -0.959 6.959 12 N -0.992 5.992 13 C 0.117 3.883 14 C -0.125 4.125 15 C 0.050 3.950 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.279 1.279 24 C -0.125 4.125 25 C 0.122 3.878 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.104 0.896 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.970 -3.511 -5.181 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.003 4.003 5 C -0.096 4.096 6 H 0.109 0.891 7 C -0.232 4.232 8 C -0.761 4.761 9 S 2.704 3.296 10 O -0.949 6.949 11 O -0.950 6.950 12 N -0.831 5.831 13 C -0.007 4.007 14 C -0.164 4.164 15 C 0.032 3.968 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.164 4.164 25 C -0.003 4.003 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.122 0.878 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.545 -2.549 -4.988 18.417 hybrid contribution 1.228 -1.946 0.088 2.303 sum -16.317 -4.495 -4.900 17.620 Atomic orbital electron populations 1.21745 0.93732 1.02195 1.03178 1.22461 0.95591 0.83823 1.00165 1.87857 1.21054 1.26402 1.95469 1.22477 0.81166 0.95808 1.00820 1.20757 0.90990 0.97028 1.00782 0.89095 1.22237 1.03111 1.01889 0.95985 1.30817 1.03881 1.29216 1.12179 1.04906 0.73230 0.77275 0.74145 1.93546 1.84029 1.70229 1.47068 1.93573 1.80764 1.76389 1.44251 1.57597 1.22939 1.88817 1.13717 1.21812 0.96488 1.01427 0.80972 1.22119 0.95866 0.93592 1.04820 1.18589 0.92121 0.97491 0.88628 1.21172 1.18523 1.13564 1.01999 0.92817 1.24964 0.97120 0.96205 0.95678 1.69828 1.39157 1.37625 1.06274 0.86694 0.81481 0.82767 0.77232 1.20339 1.21327 1.20423 1.22034 0.97271 0.95859 1.01242 1.21520 0.93434 1.00367 0.84980 0.91155 0.91804 0.91842 0.93396 0.93345 0.92719 0.92766 0.90682 0.91664 0.90694 0.84663 0.84710 0.91513 0.90960 0.94432 0.87842 0.95342 0.92873 0.93106 0.92130 0.90687 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.48 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.32 9.88 -35.23 -0.35 -4.67 16 4 C 0.07 0.79 5.32 37.16 0.20 0.98 16 5 C -0.08 -0.88 2.62 -90.62 -0.24 -1.12 16 6 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 7 C -0.18 -2.01 8.78 37.16 0.33 -1.68 16 8 C -0.63 -7.54 5.62 37.16 0.21 -7.33 16 9 S 2.61 39.92 5.07 -107.50 -0.54 39.38 16 10 O -0.96 -15.99 14.47 -57.54 -0.83 -16.82 16 11 O -0.96 -17.20 16.71 -57.54 -0.96 -18.16 16 12 N -0.99 -16.53 3.21 -113.27 -0.36 -16.90 16 13 C 0.12 2.14 6.34 -3.49 -0.02 2.12 16 14 C -0.12 -2.66 5.17 -26.38 -0.14 -2.79 16 15 C 0.05 1.15 2.06 -91.72 -0.19 0.96 16 16 C -0.51 -13.23 8.56 -34.44 -0.29 -13.53 16 17 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -24.12 11.30 55.43 0.63 -23.49 16 20 Si 0.89 20.44 29.54 -169.99 -5.02 15.41 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.13 -2.32 5.30 -26.61 -0.14 -2.47 16 25 C 0.12 2.00 6.31 -3.71 -0.02 1.98 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.94 5.61 -51.93 -0.29 0.65 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.80 7.82 -51.93 -0.41 0.40 16 36 H 0.14 1.48 8.14 -51.92 -0.42 1.06 16 37 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.22 7.09 -51.93 -0.37 0.85 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.07 1.08 7.10 -51.93 -0.37 0.71 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -30.35 377.95 -10.00 -40.35 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.48 Total: 0.50 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 0.22 Total: -21.31 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.26 Total: -40.39 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -2.14 Total: -39.64 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 39.92 SS G_CDS: -0.54 Total: 39.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.35 -10.00 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560291115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.225 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds