Wall clock time and date at job start Tue Mar 31 2020 12:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42893 * 109.47030 * 2 1 4 4 C 1.42900 * 113.99928 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47586 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47362 * 54.99244 * 5 4 3 7 7 C 1.53006 * 109.46623 * 294.99796 * 5 4 3 8 8 C 1.52997 * 109.47317 * 174.99976 * 5 4 3 9 9 S 1.81401 * 109.47024 * 184.99583 * 8 5 4 10 10 O 1.42095 * 110.54700 * 291.62723 * 9 8 5 11 11 O 1.42110 * 110.53918 * 68.37627 * 9 8 5 12 12 N 1.65594 * 104.45000 * 179.97438 * 9 8 5 13 13 C 1.46929 * 120.63453 * 269.72497 * 12 9 8 14 14 C 1.53620 * 108.54776 * 126.36666 * 13 12 9 15 15 C 1.53048 * 109.23956 * 54.85606 * 14 13 12 16 16 C 1.50705 * 109.44451 * 178.50009 * 15 14 13 17 17 H 1.08000 * 119.99742 * 120.06523 * 16 15 14 18 18 C 1.37877 * 119.99779 * 300.05953 * 16 15 14 19 19 N 1.31510 * 120.00117 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99662 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47358 * 59.99514 * 20 18 16 22 22 H 1.48497 * 109.46949 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46724 * 299.99476 * 20 18 16 24 24 C 1.53043 * 109.53511 * 298.51118 * 15 14 13 25 25 C 1.46924 * 120.62972 * 90.00245 * 12 9 8 26 26 H 1.08997 * 109.47697 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46943 * 299.99942 * 1 2 3 28 28 H 1.08998 * 109.47264 * 59.99759 * 1 2 3 29 29 H 1.09002 * 109.46589 * 240.00052 * 2 1 3 30 30 H 1.08997 * 109.46784 * 120.00015 * 2 1 3 31 31 H 1.09001 * 109.47333 * 59.99585 * 4 3 2 32 32 H 1.09007 * 109.46855 * 299.99803 * 4 3 2 33 33 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00075 * 7 5 4 35 35 H 1.09000 * 109.47050 * 59.99904 * 7 5 4 36 36 H 1.09000 * 109.46875 * 304.99500 * 8 5 4 37 37 H 1.08998 * 109.47192 * 64.99903 * 8 5 4 38 38 H 1.09005 * 109.58408 * 246.20129 * 13 12 9 39 39 H 1.09004 * 109.58580 * 6.62427 * 13 12 9 40 40 H 1.08999 * 109.63163 * 294.86829 * 14 13 12 41 41 H 1.08994 * 109.43446 * 174.72598 * 14 13 12 42 42 H 1.08995 * 109.45504 * 58.53499 * 15 14 13 43 43 H 0.97003 * 119.99951 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.49768 * 301.41126 * 24 15 14 45 45 H 1.09003 * 109.51406 * 181.33212 * 24 15 14 46 46 H 1.09001 * 109.58910 * 353.37159 * 25 12 9 47 47 H 1.09001 * 109.58854 * 113.65670 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3500 3.4409 0.8424 7 6 3.3674 3.5889 -1.3068 8 6 5.3454 3.0604 0.1252 9 16 5.8013 4.8098 0.2746 10 8 5.5482 5.4968 -0.9432 11 8 5.3585 5.3360 1.5182 12 7 7.4523 4.7972 0.4017 13 6 8.1013 4.7156 1.7174 14 6 9.0884 3.5387 1.7031 15 6 10.0600 3.7095 0.5329 16 6 11.0537 2.5765 0.5365 17 1 11.1229 1.9163 -0.3155 18 6 11.8745 2.3829 1.6272 19 7 11.7900 3.1866 2.6647 20 14 13.1068 0.9789 1.6313 21 1 14.0506 1.1454 0.4970 22 1 13.8621 0.9870 2.9098 23 1 12.3866 -0.3121 1.4906 24 6 9.2810 3.7004 -0.7844 25 6 8.2961 4.8736 -0.7986 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 3.6481 4.6422 -1.3061 34 1 3.8428 3.0863 -2.1490 35 1 2.2845 3.5019 -1.3959 36 1 5.6816 2.5204 1.0104 37 1 5.8182 2.6361 -0.7606 38 1 8.6372 5.6432 1.9186 39 1 7.3471 4.5525 2.4873 40 1 8.5412 2.6031 1.5880 41 1 9.6461 3.5217 2.6395 42 1 10.5890 4.6569 0.6356 43 1 12.3677 3.0506 3.4320 44 1 8.7321 2.7633 -0.8760 45 1 9.9756 3.7983 -1.6188 46 1 7.6706 4.8147 -1.6894 47 1 8.8457 5.8149 -0.7997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560291115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:28 Heat of formation + Delta-G solvation = -158.462193 kcal Electronic energy + Delta-G solvation = -26166.149538 eV Core-core repulsion = 22474.657760 eV Total energy + Delta-G solvation = -3691.491778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.39216 -39.26840 -38.26405 -37.09839 -36.41093 -35.24621 -32.59476 -32.01001 -31.63631 -28.63538 -27.57252 -27.16982 -24.14357 -23.89811 -23.65106 -21.80417 -20.84180 -19.74592 -18.89984 -18.25812 -17.97048 -17.33256 -17.00700 -16.92853 -16.50307 -15.76397 -15.71090 -15.31887 -14.95828 -14.85218 -14.54166 -14.41434 -14.33493 -13.95533 -13.84245 -13.64216 -13.38538 -13.25643 -13.14005 -12.88222 -12.76517 -12.65442 -12.59735 -12.45491 -12.42851 -12.36396 -12.05748 -11.96501 -11.90866 -11.84486 -11.44342 -11.36114 -10.90942 -10.75524 -10.55351 -10.35006 -9.78030 -8.03154 -6.16756 -0.76253 1.44609 1.45685 1.52414 1.63379 2.46639 2.56723 2.91931 3.11596 3.23509 3.51366 3.64369 3.77857 3.89894 4.15702 4.20633 4.28767 4.32310 4.37261 4.44669 4.51228 4.53254 4.56825 4.62153 4.67717 4.71349 4.76359 4.84930 4.85276 4.87809 4.98147 5.04170 5.08396 5.16098 5.26990 5.29815 5.35828 5.39665 5.59251 5.68042 5.74601 6.06557 6.23678 6.24519 6.44218 6.95729 7.51381 8.99833 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.003427 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.029508 B = 8168.560038 C = 9373.917793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.408 6.408 4 C 0.074 3.926 5 C -0.081 4.081 6 H 0.085 0.915 7 C -0.177 4.177 8 C -0.612 4.612 9 S 2.614 3.386 10 O -0.974 6.974 11 O -0.991 6.991 12 N -0.996 5.996 13 C 0.126 3.874 14 C -0.116 4.116 15 C 0.044 3.956 16 C -0.529 4.529 17 H 0.054 0.946 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.947 3.053 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.271 1.271 24 C -0.117 4.117 25 C 0.123 3.877 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.071 0.929 42 H -0.006 1.006 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.102 -5.390 -6.373 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.328 6.328 4 C -0.003 4.003 5 C -0.101 4.101 6 H 0.103 0.897 7 C -0.234 4.234 8 C -0.744 4.744 9 S 2.712 3.288 10 O -0.965 6.965 11 O -0.982 6.982 12 N -0.834 5.834 13 C 0.001 3.999 14 C -0.156 4.156 15 C 0.025 3.975 16 C -0.567 4.567 17 H 0.072 0.928 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.774 3.226 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.196 1.196 24 C -0.156 4.156 25 C -0.002 4.002 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.012 0.988 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.121 0.879 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.667 -4.387 -6.192 20.151 hybrid contribution 1.524 -1.387 0.431 2.105 sum -17.144 -5.774 -5.760 18.985 Atomic orbital electron populations 1.21769 0.92942 1.03331 1.02690 1.22672 0.96336 0.82835 1.00966 1.87832 1.21296 1.28038 1.95636 1.22483 0.81252 0.94728 1.01881 1.20819 0.90423 0.98188 1.00669 0.89705 1.22260 1.03619 1.01101 0.96463 1.30591 1.04529 1.25088 1.14179 1.04724 0.72283 0.78647 0.73171 1.93526 1.83843 1.71896 1.47196 1.93533 1.80884 1.78188 1.45549 1.57557 1.23493 1.89394 1.12944 1.21559 0.96269 0.99572 0.82472 1.21904 0.95923 0.95178 1.02562 1.18591 0.92417 0.94807 0.91675 1.21577 1.19173 1.14171 1.01801 0.92791 1.25678 0.98893 0.98353 0.95577 1.69978 1.39862 1.39026 1.06689 0.85779 0.79453 0.80386 0.76977 1.20055 1.21508 1.19626 1.21908 0.97460 0.97481 0.98757 1.21532 0.93502 0.99227 0.85913 0.89233 0.92436 0.92175 0.92366 0.92724 0.91343 0.92014 0.92108 0.90366 0.90295 0.83140 0.82331 0.92652 0.89521 0.93683 0.91062 0.98812 0.93167 0.91790 0.91752 0.87915 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.41 -8.18 9.88 -148.98 -1.47 -9.66 16 4 C 0.07 1.34 5.32 71.98 0.38 1.73 16 5 C -0.08 -1.68 2.62 -10.79 -0.03 -1.70 16 6 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.18 -3.68 8.78 71.98 0.63 -3.05 16 8 C -0.61 -12.72 5.62 71.98 0.40 -12.32 16 9 S 2.61 75.80 5.07 -56.49 -0.29 75.51 16 10 O -0.97 -30.96 14.47 -127.65 -1.85 -32.81 16 11 O -0.99 -34.82 16.71 -127.65 -2.13 -36.95 16 12 N -1.00 -31.97 3.21 -512.27 -1.65 -33.61 16 13 C 0.13 4.60 6.34 86.51 0.55 5.15 16 14 C -0.12 -4.97 5.17 30.82 0.16 -4.81 16 15 C 0.04 2.01 2.06 -11.51 -0.02 1.98 16 16 C -0.53 -27.20 8.56 25.60 0.22 -26.98 16 17 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 18 C 0.01 0.71 5.30 84.66 0.45 1.16 16 19 N -0.92 -50.67 11.30 21.45 0.24 -50.43 16 20 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 C -0.12 -4.19 5.30 30.67 0.16 -4.03 16 25 C 0.12 3.85 6.31 86.36 0.55 4.39 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.44 5.61 -2.39 -0.01 1.43 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.56 7.82 -2.39 -0.02 1.54 16 36 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.09 2.88 7.09 -2.39 -0.02 2.87 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 3.53 6.03 -2.39 -0.01 3.52 16 42 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.10 2.67 7.10 -2.39 -0.02 2.65 16 47 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.28 377.95 0.47 -64.81 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.92 Total: 17.67 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 4.67 Total: -38.38 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -1.40 Total: -84.04 kcal Atomic # 8 Polarization: -73.96 SS G_CDS: -5.45 Total: -79.41 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 75.80 SS G_CDS: -0.29 Total: 75.51 kcal Total: -65.28 0.47 -64.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560291115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.654 kcal (2) G-P(sol) polarization free energy of solvation -65.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds