Wall clock time and date at job start Tue Mar 31 2020 12:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47177 * 2 1 4 4 C 1.35979 * 117.00019 * 180.02562 * 3 2 1 5 5 C 1.38718 * 120.06728 * 0.02562 * 4 3 2 6 6 C 1.37950 * 119.90206 * 180.02562 * 5 4 3 7 7 C 1.39133 * 120.29130 * 359.96718 * 6 5 4 8 8 C 1.38349 * 119.78002 * 359.85714 * 7 6 5 9 9 C 1.38499 * 119.88721 * 0.25317 * 8 7 6 10 10 C 1.50782 * 121.40930 * 180.47869 * 8 7 6 11 11 H 1.09001 * 109.43353 * 102.12224 * 10 8 7 12 12 N 1.46500 * 109.43750 * 221.99888 * 10 8 7 13 13 C 1.34770 * 119.99847 * 274.99529 * 12 10 8 14 14 O 1.21280 * 120.00327 * 0.02562 * 13 12 10 15 15 C 1.50705 * 120.00180 * 179.97438 * 13 12 10 16 16 C 1.52993 * 109.47431 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47058 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00257 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99921 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99863 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47062 * 60.00161 * 21 19 17 23 23 H 1.48506 * 109.46694 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47058 * 299.99869 * 21 19 17 25 25 C 1.53074 * 109.67938 * 342.06467 * 10 8 7 26 26 C 1.53400 * 108.29020 * 48.28223 * 25 10 8 27 27 O 1.35946 * 118.43868 * 179.78579 * 7 6 5 28 28 H 1.08993 * 109.47595 * 60.00025 * 1 2 3 29 29 H 1.09004 * 109.47323 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46977 * 300.00000 * 1 2 3 31 31 H 1.09002 * 109.46750 * 239.99499 * 2 1 3 32 32 H 1.08999 * 109.46919 * 119.99950 * 2 1 3 33 33 H 1.07997 * 120.05685 * 0.09238 * 5 4 3 34 34 H 1.08002 * 119.85559 * 179.97438 * 6 5 4 35 35 H 1.08000 * 119.86179 * 179.82876 * 9 8 7 36 36 H 0.96995 * 119.99792 * 95.00461 * 12 10 8 37 37 H 1.08996 * 109.47021 * 300.01443 * 15 13 12 38 38 H 1.09006 * 109.46138 * 60.00859 * 15 13 12 39 39 H 1.09004 * 109.47093 * 300.00397 * 16 15 13 40 40 H 1.08999 * 109.47032 * 60.00353 * 16 15 13 41 41 H 0.97001 * 119.99629 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.69317 * 288.57739 * 25 10 8 43 43 H 1.09000 * 109.69782 * 167.98109 * 25 10 8 44 44 H 1.09001 * 109.67850 * 175.56882 * 26 25 10 45 45 H 1.08994 * 109.68581 * 55.01750 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2007 0.4263 -0.0016 6 6 5.5678 0.6110 -0.0016 7 6 6.1024 1.8955 -0.0013 8 6 5.2579 2.9913 -0.0039 9 6 3.8855 2.8049 -0.0015 10 6 5.7974 4.3992 -0.0143 11 1 5.7213 4.8093 -1.0214 12 7 5.0172 5.2272 0.9087 13 6 3.8705 5.8011 0.4941 14 8 3.4841 5.6317 -0.6430 15 6 3.0676 6.6523 1.4437 16 6 1.8220 7.1787 0.7281 17 6 1.0195 8.0305 1.6776 18 1 1.3636 8.1816 2.6901 19 6 -0.1543 8.6169 1.2537 20 7 -0.5731 8.4332 0.0207 21 14 -1.1494 9.6721 2.4309 22 1 -0.3219 10.8166 2.8900 23 1 -2.3584 10.1831 1.7362 24 1 -1.5587 8.8559 3.6020 25 6 7.2643 4.3924 0.4231 26 6 7.9976 3.3017 -0.3680 27 8 7.4548 2.0338 0.0032 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7901 -0.5726 -0.0035 34 1 6.2260 -0.2453 -0.0020 35 1 3.2266 3.6606 -0.0008 36 1 5.3261 5.3624 1.8182 37 1 2.7667 6.0531 2.3030 38 1 3.6752 7.4920 1.7812 39 1 2.1227 7.7779 -0.1314 40 1 1.2145 6.3389 0.3909 41 1 -1.3987 8.8461 -0.2776 42 1 7.3284 4.1785 1.4900 43 1 7.7144 5.3630 0.2147 44 1 9.0613 3.3291 -0.1316 45 1 7.8542 3.4638 -1.4363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589713206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:32 Heat of formation + Delta-G solvation = -98.396199 kcal Electronic energy + Delta-G solvation = -26932.235484 eV Core-core repulsion = 23107.904411 eV Total energy + Delta-G solvation = -3824.331073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08182 -39.41416 -39.01000 -36.49906 -35.43370 -33.43535 -32.13397 -31.80060 -30.80482 -30.54347 -29.10452 -26.20706 -24.82207 -24.34043 -22.89316 -22.30835 -21.51512 -20.24062 -19.60649 -18.06927 -17.75071 -16.93031 -16.73150 -16.14173 -15.89489 -15.66051 -15.49760 -15.08381 -14.72564 -14.41007 -14.21012 -13.60740 -13.55978 -13.45212 -13.17662 -13.00387 -12.82343 -12.64682 -12.37396 -12.19110 -12.07439 -11.66061 -11.54072 -11.22860 -11.13813 -11.11035 -10.89346 -10.69943 -10.58619 -10.28260 -9.93107 -9.65865 -9.21538 -9.06590 -8.93218 -8.80547 -8.29538 -7.71412 -5.93686 -3.98082 1.19996 1.46331 3.10240 3.16683 3.28722 3.35949 3.39408 3.41155 3.44327 3.79916 4.40606 4.49305 4.51119 4.59550 4.77030 4.83251 4.88413 4.92258 5.03899 5.07073 5.16431 5.28266 5.34390 5.41180 5.45953 5.47871 5.57947 5.72053 5.72360 5.83319 5.88573 6.01162 6.04634 6.22764 6.24917 6.34805 6.46022 6.54559 6.68232 6.89942 7.26998 7.54600 7.76055 7.83641 7.88505 8.09341 8.40526 8.73157 9.10002 9.65227 11.17170 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.003694 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.113560 B = 7577.901562 C = 9738.233594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.056 3.944 3 O -0.310 6.310 4 C 0.099 3.901 5 C -0.175 4.175 6 C -0.117 4.117 7 C 0.096 3.904 8 C -0.132 4.132 9 C -0.098 4.098 10 C 0.188 3.812 11 H 0.101 0.899 12 N -0.735 5.735 13 C 0.510 3.490 14 O -0.527 6.527 15 C -0.130 4.130 16 C 0.038 3.962 17 C -0.528 4.528 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.165 4.165 26 C 0.067 3.933 27 O -0.318 6.318 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.261 0.739 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.569 -17.289 1.232 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.224 6.224 4 C 0.054 3.946 5 C -0.194 4.194 6 C -0.135 4.135 7 C 0.052 3.948 8 C -0.135 4.135 9 C -0.117 4.117 10 C 0.083 3.917 11 H 0.119 0.881 12 N -0.388 5.388 13 C 0.300 3.700 14 O -0.403 6.403 15 C -0.170 4.170 16 C 0.000 4.000 17 C -0.566 4.566 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.203 4.203 26 C -0.009 4.009 27 O -0.233 6.233 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.234 0.766 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.092 -17.330 0.309 22.983 hybrid contribution -0.447 0.573 1.006 1.241 sum 14.644 -16.758 1.315 22.294 Atomic orbital electron populations 1.21778 0.92706 1.02537 1.04063 1.22742 0.96066 0.82276 1.00872 1.86185 1.18646 1.28716 1.88889 1.18850 0.82623 0.93828 0.99328 1.21005 0.93213 0.98141 1.07022 1.20250 0.94282 0.94859 1.04155 1.18518 0.82080 0.93097 1.01154 1.20038 0.93162 0.94870 1.05401 1.20652 0.94405 0.96090 1.00550 1.19574 0.89300 0.86745 0.96075 0.88095 1.46268 1.25172 1.51985 1.15401 1.21643 0.79884 0.78956 0.89546 1.90687 1.68624 1.60637 1.20306 1.21891 0.99132 0.97865 0.98128 1.18893 0.89421 0.96354 0.95312 1.21176 1.06927 1.30594 0.97910 0.92698 1.25013 0.97557 0.96609 0.95103 1.69990 1.22488 1.44118 1.16163 0.86666 0.79584 0.80721 0.81033 1.20276 1.21288 1.20253 1.22498 0.94860 1.00961 1.01979 1.22902 0.98103 0.81032 0.98871 1.85974 1.18023 1.34770 1.84524 0.91282 0.90600 0.91280 0.92346 0.92346 0.85109 0.85143 0.83431 0.76632 0.90155 0.90161 0.95819 0.95729 0.92918 0.89784 0.88930 0.87173 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.61 5.46 37.16 0.20 0.81 16 3 O -0.31 -4.91 10.14 -19.67 -0.20 -5.11 16 4 C 0.10 1.54 6.68 -39.30 -0.26 1.27 16 5 C -0.17 -2.19 9.03 -39.51 -0.36 -2.54 16 6 C -0.12 -1.42 9.93 -39.35 -0.39 -1.81 16 7 C 0.10 1.27 6.47 -39.21 -0.25 1.02 16 8 C -0.13 -1.93 5.56 -104.45 -0.58 -2.51 16 9 C -0.10 -1.68 9.01 -39.38 -0.35 -2.03 16 10 C 0.19 2.47 2.70 -69.00 -0.19 2.28 16 11 H 0.10 1.49 7.57 -51.93 -0.39 1.09 16 12 N -0.73 -10.33 4.86 -54.85 -0.27 -10.60 16 13 C 0.51 9.68 6.39 -10.99 -0.07 9.61 16 14 O -0.53 -12.13 13.91 5.56 0.08 -12.05 16 15 C -0.13 -2.64 5.64 -27.88 -0.16 -2.80 16 16 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 17 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 21 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.16 -1.47 5.67 -26.49 -0.15 -1.62 16 26 C 0.07 0.56 7.03 37.36 0.26 0.83 16 27 O -0.32 -3.67 10.27 -19.57 -0.20 -3.87 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 32 H 0.06 0.54 7.67 -51.93 -0.40 0.15 16 33 H 0.13 1.27 6.31 -52.49 -0.33 0.93 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.15 2.98 4.69 -52.49 -0.25 2.73 16 36 H 0.40 4.44 8.58 -40.82 -0.35 4.09 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -35.41 368.05 -8.50 -43.91 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.73 Total: 3.69 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -2.45 Total: -11.46 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.47 Total: -37.42 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.32 Total: -21.03 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.41 -8.50 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589713206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.489 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds