Wall clock time and date at job start Tue Mar 31 2020 12:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47469 * 2 1 4 4 C 1.35981 * 116.99910 * 180.02562 * 3 2 1 5 5 C 1.38716 * 120.07150 * 0.02562 * 4 3 2 6 6 C 1.37950 * 119.90254 * 179.88374 * 5 4 3 7 7 C 1.39131 * 120.28978 * 0.02562 * 6 5 4 8 8 C 1.38346 * 119.78046 * 0.16623 * 7 6 5 9 9 C 1.38491 * 119.89026 * 359.74110 * 8 7 6 10 10 C 1.50808 * 121.41994 * 179.55802 * 8 7 6 11 11 H 1.08998 * 109.41205 * 257.83155 * 10 8 7 12 12 N 1.46502 * 109.47374 * 137.94721 * 10 8 7 13 13 C 1.34776 * 119.99797 * 84.77733 * 12 10 8 14 14 O 1.21277 * 119.99953 * 0.02562 * 13 12 10 15 15 C 1.50701 * 119.99984 * 180.02562 * 13 12 10 16 16 C 1.52999 * 109.47104 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47104 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99894 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00159 * 179.97438 * 17 16 15 20 20 N 1.31504 * 120.00157 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99765 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47486 * 89.99539 * 21 19 17 23 23 H 1.48502 * 109.47012 * 209.99388 * 21 19 17 24 24 H 1.48500 * 109.46865 * 329.99165 * 21 19 17 25 25 C 1.53073 * 109.66624 * 17.87032 * 10 8 7 26 26 C 1.53405 * 108.31919 * 311.76614 * 25 10 8 27 27 O 1.35950 * 118.43686 * 180.22921 * 7 6 5 28 28 H 1.09000 * 109.47001 * 300.00298 * 1 2 3 29 29 H 1.09005 * 109.47138 * 59.99542 * 1 2 3 30 30 H 1.08993 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46967 * 240.00034 * 2 1 3 32 32 H 1.08997 * 109.47398 * 120.00667 * 2 1 3 33 33 H 1.08004 * 120.04901 * 359.90508 * 5 4 3 34 34 H 1.08000 * 119.85525 * 180.02562 * 6 5 4 35 35 H 1.07997 * 119.86607 * 180.19352 * 9 8 7 36 36 H 0.96998 * 120.00126 * 264.78263 * 12 10 8 37 37 H 1.09007 * 109.46724 * 300.00114 * 15 13 12 38 38 H 1.08997 * 109.47282 * 59.99872 * 15 13 12 39 39 H 1.09006 * 109.46477 * 299.99683 * 16 15 13 40 40 H 1.08997 * 109.47671 * 59.99479 * 16 15 13 41 41 H 0.97007 * 120.00450 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.70045 * 192.04621 * 25 10 8 43 43 H 1.09000 * 109.70233 * 71.48522 * 25 10 8 44 44 H 1.09006 * 109.68391 * 184.42042 * 26 25 10 45 45 H 1.09001 * 109.67988 * 304.93591 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5253 -0.0005 5 6 4.2008 0.4263 -0.0016 6 6 5.5679 0.6109 -0.0046 7 6 6.1025 1.8954 -0.0060 8 6 5.2579 2.9912 -0.0009 9 6 3.8856 2.8049 0.0001 10 6 5.7974 4.3995 0.0077 11 1 5.7233 4.8096 1.0149 12 7 5.0155 5.2276 -0.9138 13 6 3.8673 5.7981 -0.4982 14 8 3.4817 5.6263 0.6387 15 6 3.0627 6.6495 -1.4463 16 6 1.8165 7.1727 -0.7294 17 6 1.0122 8.0246 -1.6773 18 1 1.3558 8.1779 -2.6896 19 6 -0.1623 8.6084 -1.2522 20 7 -0.8639 9.3522 -2.0792 21 14 -0.7563 8.3438 0.4991 22 1 -0.2014 9.4061 1.3758 23 1 -2.2399 8.3995 0.5323 24 1 -0.2999 7.0155 0.9812 25 6 7.2633 4.3923 -0.4328 26 6 7.9986 3.3015 0.3563 27 8 7.4549 2.0338 -0.0137 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.7900 -0.5726 -0.0004 34 1 6.2261 -0.2453 -0.0058 35 1 3.2267 3.6605 0.0009 36 1 5.3241 5.3652 -1.8230 37 1 3.6686 7.4912 -1.7821 38 1 2.7631 6.0513 -2.3068 39 1 1.2106 6.3312 -0.3933 40 1 2.1164 7.7710 0.1309 41 1 -1.6901 9.7632 -1.7800 42 1 7.7140 5.3629 -0.2254 43 1 7.3253 4.1789 -1.4999 44 1 9.0618 3.3288 0.1173 45 1 7.8584 3.4638 1.4250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589713207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:33 Heat of formation + Delta-G solvation = -120.458220 kcal Electronic energy + Delta-G solvation = -27027.921164 eV Core-core repulsion = 23202.633411 eV Total energy + Delta-G solvation = -3825.287754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12877 -40.65506 -40.22487 -37.49612 -36.66776 -35.54463 -33.61357 -32.89054 -32.58649 -31.57486 -30.15436 -28.27661 -26.09994 -25.23679 -23.93118 -23.32427 -22.97037 -21.41039 -20.95257 -19.26890 -19.12860 -18.63600 -17.82340 -17.56303 -17.14321 -16.97650 -16.69803 -16.26592 -16.24354 -15.85452 -15.25832 -14.98298 -14.84831 -14.60741 -14.44001 -14.39928 -14.11106 -13.86842 -13.75459 -13.42871 -13.39110 -13.08977 -12.92480 -12.62482 -12.50832 -12.17032 -12.09290 -11.99582 -11.89003 -11.79102 -11.62841 -11.42156 -11.20396 -10.80684 -10.79784 -10.23947 -9.94392 -8.74936 -8.33414 -6.35998 0.14067 0.39476 1.30251 1.32478 1.48193 1.62200 2.08664 2.26549 2.33015 2.41437 2.70710 3.02355 3.52916 3.56150 3.72055 3.86972 3.90717 4.02537 4.07026 4.09982 4.19453 4.25705 4.33462 4.36871 4.45806 4.48630 4.54104 4.66535 4.67870 4.89158 4.89196 4.91478 4.95042 4.96631 5.02857 5.16538 5.27806 5.31845 5.32973 5.41876 5.45439 5.55545 5.59548 6.21613 6.34295 6.52571 6.54480 6.70021 7.25700 7.29411 8.82362 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.004066 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.697971 B = 6883.993765 C = 9009.118893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 O -0.346 6.346 4 C 0.079 3.921 5 C -0.164 4.164 6 C -0.113 4.113 7 C 0.098 3.902 8 C -0.142 4.142 9 C -0.135 4.135 10 C 0.185 3.815 11 H 0.082 0.918 12 N -0.710 5.710 13 C 0.517 3.483 14 O -0.576 6.576 15 C -0.117 4.117 16 C 0.007 3.993 17 C -0.529 4.529 18 H 0.051 0.949 19 C 0.017 3.983 20 N -0.942 5.942 21 Si 0.935 3.065 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.266 1.266 25 C -0.155 4.155 26 C 0.061 3.939 27 O -0.320 6.320 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.110 0.890 36 H 0.417 0.583 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.004 0.996 40 H 0.010 0.990 41 H 0.268 0.732 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.148 0.852 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.193 -21.715 3.589 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.262 6.262 4 C 0.034 3.966 5 C -0.183 4.183 6 C -0.131 4.131 7 C 0.053 3.947 8 C -0.144 4.144 9 C -0.154 4.154 10 C 0.080 3.920 11 H 0.100 0.900 12 N -0.363 5.363 13 C 0.306 3.694 14 O -0.455 6.455 15 C -0.157 4.157 16 C -0.031 4.031 17 C -0.567 4.567 18 H 0.069 0.931 19 C -0.181 4.181 20 N -0.583 5.583 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.192 4.192 26 C -0.014 4.014 27 O -0.235 6.235 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.128 0.872 36 H 0.255 0.745 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.023 0.977 40 H 0.029 0.971 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.113 0.887 44 H 0.165 0.835 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.753 -21.710 4.325 29.012 hybrid contribution -1.023 0.568 0.280 1.203 sum 17.730 -21.142 4.606 27.974 Atomic orbital electron populations 1.21834 0.92257 1.04255 1.02664 1.23072 0.96510 0.80656 1.02569 1.86138 1.19176 1.31661 1.89196 1.19045 0.83016 0.94289 1.00229 1.21295 0.93113 0.98539 1.05337 1.20679 0.94532 0.95536 1.02353 1.18636 0.82821 0.93003 1.00281 1.20100 0.92435 0.96021 1.05845 1.20546 0.95203 0.95752 1.03890 1.19772 0.91614 0.85649 0.94958 0.90008 1.45926 1.23298 1.50485 1.16577 1.21188 0.80964 0.78956 0.88336 1.90654 1.70225 1.62596 1.22033 1.21505 0.96641 0.99488 0.98026 1.19197 0.93428 0.95147 0.95317 1.21416 1.06702 1.29596 0.98976 0.93086 1.25751 0.96734 0.94409 1.01208 1.70012 1.16433 1.34353 1.37476 0.85875 0.77644 0.79558 0.80920 1.19085 1.20212 1.19091 1.22505 0.91490 1.02622 1.02620 1.23241 0.99675 0.79443 0.99039 1.85988 1.16676 1.36477 1.84315 0.92678 0.92603 0.87336 0.90469 0.90598 0.82084 0.82151 0.87222 0.74515 0.87469 0.88497 0.97709 0.97123 0.92330 0.86618 0.88698 0.83485 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.28 71.98 0.74 -2.05 16 2 C 0.05 0.92 5.46 71.98 0.39 1.32 16 3 O -0.35 -10.84 10.14 -93.34 -0.95 -11.79 16 4 C 0.08 2.39 6.68 22.46 0.15 2.54 16 5 C -0.16 -3.63 9.03 22.32 0.20 -3.43 16 6 C -0.11 -2.32 9.93 22.42 0.22 -2.10 16 7 C 0.10 2.28 6.47 22.51 0.15 2.43 16 8 C -0.14 -3.90 5.56 -19.74 -0.11 -4.01 16 9 C -0.13 -4.57 9.01 22.40 0.20 -4.37 16 10 C 0.18 4.43 2.70 44.30 0.12 4.55 16 11 H 0.08 2.29 7.58 -2.39 -0.02 2.27 16 12 N -0.71 -18.49 4.87 -445.82 -2.17 -20.66 16 13 C 0.52 18.83 6.39 87.66 0.56 19.39 16 14 O -0.58 -25.88 13.89 -3.02 -0.04 -25.92 16 15 C -0.12 -4.56 5.64 29.85 0.17 -4.40 16 16 C 0.01 0.36 3.33 29.85 0.10 0.46 16 17 C -0.53 -31.19 9.66 25.60 0.25 -30.94 16 18 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 19 C 0.02 1.02 5.47 84.66 0.46 1.48 16 20 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 21 Si 0.94 47.96 27.47 68.60 1.88 49.85 16 22 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.27 -13.83 6.54 99.48 0.65 -13.18 16 25 C -0.15 -2.12 5.67 30.75 0.17 -1.95 16 26 C 0.06 0.75 7.03 72.12 0.51 1.26 16 27 O -0.32 -6.04 10.27 -92.99 -0.96 -6.99 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.23 7.66 -2.38 -0.02 1.22 16 32 H 0.08 1.22 7.67 -2.39 -0.02 1.20 16 33 H 0.16 2.46 6.31 -2.91 -0.02 2.44 16 34 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.11 4.53 4.67 -2.91 -0.01 4.52 16 36 H 0.42 8.07 8.58 -92.71 -0.80 7.27 16 37 H 0.11 3.71 8.14 -2.38 -0.02 3.69 16 38 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.00 0.25 7.16 -2.38 -0.02 0.23 16 40 H 0.01 0.55 7.53 -2.39 -0.02 0.53 16 41 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 42 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.17 8.11 -2.39 -0.02 1.15 16 44 H 0.15 0.81 8.14 -2.38 -0.02 0.80 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -80.98 364.42 2.51 -78.47 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.16 Total: 16.35 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.28 Total: -19.82 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.87 Total: -80.14 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.94 Total: -44.70 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.88 Total: 49.85 kcal Total: -80.98 2.51 -78.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589713207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.992 kcal (2) G-P(sol) polarization free energy of solvation -80.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds