Wall clock time and date at job start Tue Mar 31 2020 13:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47316 * 2 1 4 4 C 1.42904 * 114.00052 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.52425 * 29.92157 * 4 3 2 6 6 C 1.53040 * 109.50012 * 269.83647 * 4 3 2 7 7 C 1.53036 * 109.53888 * 178.67980 * 6 4 3 8 8 C 1.52764 * 109.38174 * 61.24056 * 7 6 4 9 9 N 1.46925 * 109.00915 * 305.59096 * 8 7 6 10 10 S 1.65605 * 120.62615 * 233.58480 * 9 8 7 11 11 O 1.42100 * 104.27816 * 153.64901 * 10 9 8 12 12 O 1.42096 * 104.27997 * 25.78817 * 10 9 8 13 13 C 1.81402 * 104.44616 * 269.71717 * 10 9 8 14 14 C 1.53007 * 109.47174 * 180.02562 * 13 10 9 15 15 C 1.52998 * 109.47033 * 59.99798 * 14 13 10 16 16 C 1.53007 * 109.46832 * 300.00148 * 14 13 10 17 17 C 1.50693 * 109.47077 * 179.97438 * 14 13 10 18 18 H 1.07998 * 120.00281 * 354.77667 * 17 14 13 19 19 C 1.37883 * 119.99644 * 175.04457 * 17 14 13 20 20 N 1.31515 * 119.99890 * 199.85382 * 19 17 14 21 21 Si 1.86800 * 119.99837 * 19.85915 * 19 17 14 22 22 H 1.48504 * 109.47133 * 84.62969 * 21 19 17 23 23 H 1.48500 * 109.47051 * 204.62051 * 21 19 17 24 24 H 1.48493 * 109.47368 * 324.62641 * 21 19 17 25 25 C 1.46923 * 118.74098 * 53.30533 * 9 8 7 26 26 H 1.08997 * 109.47680 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47094 * 300.00608 * 1 2 3 28 28 H 1.09005 * 109.47114 * 59.99983 * 1 2 3 29 29 H 1.09002 * 109.47094 * 239.99392 * 2 1 3 30 30 H 1.08997 * 109.46782 * 120.00060 * 2 1 3 31 31 H 1.08994 * 109.45943 * 298.70515 * 6 4 3 32 32 H 1.09000 * 109.45294 * 58.67503 * 6 4 3 33 33 H 1.08994 * 109.49704 * 181.31771 * 7 6 4 34 34 H 1.08995 * 109.49767 * 301.41839 * 7 6 4 35 35 H 1.09000 * 109.50804 * 185.70560 * 8 7 6 36 36 H 1.08997 * 109.42919 * 65.42337 * 8 7 6 37 37 H 1.08994 * 109.47575 * 60.00424 * 13 10 9 38 38 H 1.09004 * 109.47394 * 299.99790 * 13 10 9 39 39 H 1.09003 * 109.47131 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47349 * 299.99963 * 15 14 13 41 41 H 1.09004 * 109.47474 * 60.00143 * 15 14 13 42 42 H 1.09000 * 109.46825 * 310.51976 * 16 14 13 43 43 H 1.08994 * 109.46927 * 70.51959 * 16 14 13 44 44 H 1.08997 * 109.46704 * 190.52249 * 16 14 13 45 45 H 0.97000 * 119.99740 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58409 * 66.43441 * 25 9 8 47 47 H 1.09002 * 109.58652 * 186.85601 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8646 0.6010 -0.5116 6 6 3.9393 1.5046 1.4434 7 6 5.4671 1.5923 1.4453 8 6 5.9022 2.8751 0.7391 9 7 5.2968 2.9136 -0.5991 10 16 6.2371 3.1338 -1.9444 11 8 5.5013 2.5158 -2.9913 12 8 7.5161 2.6472 -1.5616 13 6 6.2833 4.9325 -2.1749 14 6 7.1321 5.2678 -3.4030 15 6 6.5193 4.6105 -4.6412 16 6 8.5547 4.7431 -3.1983 17 6 7.1699 6.7620 -3.5947 18 1 6.5743 7.4030 -2.9616 19 6 7.9607 7.3105 -4.5822 20 7 8.3087 8.5771 -4.5181 21 14 8.5375 6.2544 -6.0110 22 1 7.4856 6.2218 -7.0587 23 1 9.7839 6.8281 -6.5789 24 1 8.8015 4.8741 -5.5314 25 6 3.8422 2.7469 -0.7215 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5248 2.3776 1.9476 32 1 3.6269 0.6008 1.9665 33 1 5.8297 1.6005 2.4731 34 1 5.8815 0.7321 0.9196 35 1 6.9884 2.8908 0.6494 36 1 5.5686 3.7376 1.3160 37 1 6.7194 5.4009 -1.2926 38 1 5.2698 5.3063 -2.3211 39 1 7.1243 4.8490 -5.5161 40 1 6.4916 3.5297 -4.5028 41 1 5.5058 4.9842 -4.7871 42 1 8.9229 5.0623 -2.2232 43 1 8.5508 3.6542 -3.2465 44 1 9.2038 5.1391 -3.9792 45 1 8.8647 8.9630 -5.2129 46 1 3.3372 3.5988 -0.2662 47 1 3.5697 2.6781 -1.7747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590745189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:32 Heat of formation + Delta-G solvation = -109.012537 kcal Electronic energy + Delta-G solvation = -26884.094950 eV Core-core repulsion = 23194.747470 eV Total energy + Delta-G solvation = -3689.347480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.38861 -37.10045 -36.77885 -36.68501 -35.48405 -32.44591 -31.96364 -31.83472 -29.63792 -27.40918 -26.35637 -25.05401 -24.71136 -23.28725 -22.85959 -20.74444 -19.71943 -18.44071 -17.74938 -16.80099 -16.20541 -16.09333 -15.88303 -15.67754 -15.20119 -15.04561 -14.65522 -13.98910 -13.94210 -13.60895 -13.37278 -13.33521 -13.12893 -12.88192 -12.59640 -12.38735 -12.37411 -12.24763 -11.96144 -11.71107 -11.63419 -11.52922 -11.28031 -11.15086 -11.03380 -11.00120 -10.92957 -10.85792 -10.74849 -10.19403 -10.08830 -9.98491 -9.72447 -9.20666 -8.92501 -8.74299 -8.39363 -6.22450 -4.15957 0.62638 2.82289 3.25032 3.34767 3.38085 3.47106 4.18228 4.34183 4.43890 4.52910 4.62047 4.77020 4.78237 4.88710 4.99343 5.05495 5.06806 5.11050 5.12893 5.30711 5.39430 5.44584 5.50089 5.62324 5.62952 5.67102 5.70660 5.71668 5.82376 5.87849 6.00262 6.03386 6.11111 6.25114 6.32487 6.43870 6.48342 6.53114 6.73294 6.87678 7.03578 7.15184 7.30956 7.63469 8.37789 8.83277 9.43972 10.90034 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.003607 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.398962 B = 7761.246587 C = 8159.326344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.080 3.920 5 H 0.065 0.935 6 C -0.138 4.138 7 C -0.129 4.129 8 C 0.113 3.887 9 N -1.004 6.004 10 S 2.588 3.412 11 O -0.961 6.961 12 O -0.959 6.959 13 C -0.572 4.572 14 C 0.055 3.945 15 C -0.180 4.180 16 C -0.170 4.170 17 C -0.513 4.513 18 H 0.078 0.922 19 C 0.081 3.919 20 N -0.883 5.883 21 Si 0.864 3.136 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.243 1.243 25 C 0.122 3.878 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.066 0.934 45 H 0.266 0.734 46 H 0.077 0.923 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 -15.401 12.360 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C 0.020 3.980 5 H 0.083 0.917 6 C -0.176 4.176 7 C -0.168 4.168 8 C -0.012 4.012 9 N -0.842 5.842 10 S 2.688 3.312 11 O -0.952 6.952 12 O -0.950 6.950 13 C -0.705 4.705 14 C 0.052 3.948 15 C -0.237 4.237 16 C -0.227 4.227 17 C -0.551 4.551 18 H 0.096 0.904 19 C -0.123 4.123 20 N -0.519 5.519 21 Si 0.694 3.306 22 H -0.207 1.207 23 H -0.226 1.226 24 H -0.169 1.169 25 C -0.003 4.003 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.226 -15.806 11.809 22.222 hybrid contribution 0.226 0.025 -0.601 0.642 sum -10.000 -15.781 11.208 21.787 Atomic orbital electron populations 1.21744 0.93712 1.02159 1.03214 1.22511 0.95546 0.83867 1.00083 1.87870 1.20521 1.26462 1.95089 1.22370 0.80955 0.98788 0.95845 0.91671 1.21989 0.95863 1.02806 0.96921 1.21774 0.95307 0.98647 1.01112 1.21400 0.99148 0.98024 0.82647 1.57917 1.16511 1.88376 1.21356 1.05818 0.73471 0.79414 0.72512 1.93532 1.72287 1.74926 1.54417 1.93542 1.40179 1.79396 1.81846 1.30414 1.09881 1.21167 1.09066 1.18218 0.90154 0.98815 0.87568 1.22812 1.01827 0.99044 1.00067 1.22683 0.98873 0.98396 1.02750 1.20613 1.28149 0.87633 1.18703 0.90431 1.24935 0.94461 0.94840 0.98061 1.69997 1.34879 1.13569 1.33417 0.87632 0.77764 0.81886 0.83325 1.20657 1.22620 1.16878 1.21267 0.79697 0.96935 1.02447 0.91217 0.91899 0.91676 0.93229 0.93526 0.90760 0.91776 0.90287 0.91363 0.88369 0.91180 0.85516 0.85686 0.92865 0.93459 0.91897 0.92306 0.94453 0.91497 0.92413 0.90443 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.50 6.47 37.16 0.24 0.74 16 3 O -0.38 -4.30 9.99 -35.23 -0.35 -4.65 16 4 C 0.08 0.90 2.76 -26.61 -0.07 0.82 16 5 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 6 C -0.14 -1.29 5.50 -26.69 -0.15 -1.43 16 7 C -0.13 -1.21 6.06 -26.83 -0.16 -1.38 16 8 C 0.11 1.25 6.40 -3.93 -0.03 1.23 16 9 N -1.00 -13.47 3.23 -113.77 -0.37 -13.83 16 10 S 2.59 44.81 4.49 -107.50 -0.48 44.32 16 11 O -0.96 -18.58 14.21 -57.54 -0.82 -19.40 16 12 O -0.96 -18.38 14.44 -57.54 -0.83 -19.21 16 13 C -0.57 -10.54 5.10 37.16 0.19 -10.35 16 14 C 0.06 1.27 0.52 -155.66 -0.08 1.19 16 15 C -0.18 -4.05 7.33 37.16 0.27 -3.77 16 16 C -0.17 -3.83 6.89 37.16 0.26 -3.58 16 17 C -0.51 -13.80 8.60 -34.44 -0.30 -14.09 16 18 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.08 2.26 5.22 -17.82 -0.09 2.17 16 20 N -0.88 -26.18 13.96 55.43 0.77 -25.41 16 21 Si 0.86 21.26 22.94 -169.99 -3.90 17.36 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.24 -5.61 4.63 56.52 0.26 -5.35 16 25 C 0.12 1.52 6.09 -3.71 -0.02 1.49 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.05 0.36 7.86 -51.93 -0.41 -0.05 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.53 7.86 -51.93 -0.41 0.12 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.14 6.85 -51.93 -0.36 0.78 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.13 2.14 8.14 -51.93 -0.42 1.71 16 38 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 39 H 0.05 1.23 2.66 -51.93 -0.14 1.09 16 40 H 0.05 0.99 5.46 -51.93 -0.28 0.71 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.25 8.11 -51.93 -0.42 0.83 16 43 H 0.04 0.79 6.23 -51.93 -0.32 0.46 16 44 H 0.07 1.56 4.03 -51.93 -0.21 1.35 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.10 1.34 6.86 -51.93 -0.36 0.98 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -32.43 357.00 -8.23 -40.66 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.07 Total: 2.45 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 0.44 Total: -27.67 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.41 Total: -39.24 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -2.00 Total: -43.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -3.90 Total: 17.36 kcal Atomic # 16 Polarization: 44.81 SS G_CDS: -0.48 Total: 44.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.43 -8.23 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.356 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds