Wall clock time and date at job start Tue Mar 31 2020 13:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47316 * 2 1 4 4 C 1.42904 * 114.00052 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.52425 * 29.92157 * 4 3 2 6 6 C 1.53040 * 109.50012 * 269.83647 * 4 3 2 7 7 C 1.53036 * 109.53888 * 178.67980 * 6 4 3 8 8 C 1.52764 * 109.38174 * 61.24056 * 7 6 4 9 9 N 1.46925 * 109.00915 * 305.59096 * 8 7 6 10 10 S 1.65605 * 120.62615 * 233.58480 * 9 8 7 11 11 O 1.42100 * 104.27816 * 153.64901 * 10 9 8 12 12 O 1.42096 * 104.27997 * 25.78817 * 10 9 8 13 13 C 1.81402 * 104.44616 * 269.71717 * 10 9 8 14 14 C 1.53007 * 109.47174 * 180.02562 * 13 10 9 15 15 C 1.52998 * 109.47033 * 59.99798 * 14 13 10 16 16 C 1.53007 * 109.46832 * 300.00148 * 14 13 10 17 17 C 1.50693 * 109.47077 * 179.97438 * 14 13 10 18 18 H 1.07998 * 120.00281 * 354.77667 * 17 14 13 19 19 C 1.37883 * 119.99644 * 175.04457 * 17 14 13 20 20 N 1.31515 * 119.99890 * 199.85382 * 19 17 14 21 21 Si 1.86800 * 119.99837 * 19.85915 * 19 17 14 22 22 H 1.48504 * 109.47133 * 84.62969 * 21 19 17 23 23 H 1.48500 * 109.47051 * 204.62051 * 21 19 17 24 24 H 1.48493 * 109.47368 * 324.62641 * 21 19 17 25 25 C 1.46923 * 118.74098 * 53.30533 * 9 8 7 26 26 H 1.08997 * 109.47680 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47094 * 300.00608 * 1 2 3 28 28 H 1.09005 * 109.47114 * 59.99983 * 1 2 3 29 29 H 1.09002 * 109.47094 * 239.99392 * 2 1 3 30 30 H 1.08997 * 109.46782 * 120.00060 * 2 1 3 31 31 H 1.08994 * 109.45943 * 298.70515 * 6 4 3 32 32 H 1.09000 * 109.45294 * 58.67503 * 6 4 3 33 33 H 1.08994 * 109.49704 * 181.31771 * 7 6 4 34 34 H 1.08995 * 109.49767 * 301.41839 * 7 6 4 35 35 H 1.09000 * 109.50804 * 185.70560 * 8 7 6 36 36 H 1.08997 * 109.42919 * 65.42337 * 8 7 6 37 37 H 1.08994 * 109.47575 * 60.00424 * 13 10 9 38 38 H 1.09004 * 109.47394 * 299.99790 * 13 10 9 39 39 H 1.09003 * 109.47131 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47349 * 299.99963 * 15 14 13 41 41 H 1.09004 * 109.47474 * 60.00143 * 15 14 13 42 42 H 1.09000 * 109.46825 * 310.51976 * 16 14 13 43 43 H 1.08994 * 109.46927 * 70.51959 * 16 14 13 44 44 H 1.08997 * 109.46704 * 190.52249 * 16 14 13 45 45 H 0.97000 * 119.99740 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58409 * 66.43441 * 25 9 8 47 47 H 1.09002 * 109.58652 * 186.85601 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8646 0.6010 -0.5116 6 6 3.9393 1.5046 1.4434 7 6 5.4671 1.5923 1.4453 8 6 5.9022 2.8751 0.7391 9 7 5.2968 2.9136 -0.5991 10 16 6.2371 3.1338 -1.9444 11 8 5.5013 2.5158 -2.9913 12 8 7.5161 2.6472 -1.5616 13 6 6.2833 4.9325 -2.1749 14 6 7.1321 5.2678 -3.4030 15 6 6.5193 4.6105 -4.6412 16 6 8.5547 4.7431 -3.1983 17 6 7.1699 6.7620 -3.5947 18 1 6.5743 7.4030 -2.9616 19 6 7.9607 7.3105 -4.5822 20 7 8.3087 8.5771 -4.5181 21 14 8.5375 6.2544 -6.0110 22 1 7.4856 6.2218 -7.0587 23 1 9.7839 6.8281 -6.5789 24 1 8.8015 4.8741 -5.5314 25 6 3.8422 2.7469 -0.7215 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5248 2.3776 1.9476 32 1 3.6269 0.6008 1.9665 33 1 5.8297 1.6005 2.4731 34 1 5.8815 0.7321 0.9196 35 1 6.9884 2.8908 0.6494 36 1 5.5686 3.7376 1.3160 37 1 6.7194 5.4009 -1.2926 38 1 5.2698 5.3063 -2.3211 39 1 7.1243 4.8490 -5.5161 40 1 6.4916 3.5297 -4.5028 41 1 5.5058 4.9842 -4.7871 42 1 8.9229 5.0623 -2.2232 43 1 8.5508 3.6542 -3.2465 44 1 9.2038 5.1391 -3.9792 45 1 8.8647 8.9630 -5.2129 46 1 3.3372 3.5988 -0.2662 47 1 3.5697 2.6781 -1.7747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590745189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:31 Heat of formation + Delta-G solvation = -131.902044 kcal Electronic energy + Delta-G solvation = -26885.087514 eV Core-core repulsion = 23194.747470 eV Total energy + Delta-G solvation = -3690.340044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.22732 -38.49909 -38.26380 -37.88281 -36.95240 -34.06553 -33.30931 -32.55679 -30.43769 -28.97937 -28.13873 -27.11061 -25.64206 -24.09054 -23.55795 -21.71565 -21.44290 -19.66084 -19.02958 -18.15983 -17.68744 -17.32625 -17.19212 -16.88923 -16.56093 -16.12556 -15.68623 -15.13841 -15.02308 -14.85435 -14.78654 -14.71464 -14.41388 -14.24445 -14.15595 -13.90860 -13.41362 -13.21619 -13.08612 -12.97725 -12.89950 -12.76264 -12.65840 -12.60346 -12.53929 -12.09654 -12.01937 -11.91348 -11.83076 -11.76236 -11.74714 -11.64715 -11.01882 -10.68804 -10.52728 -10.45730 -9.91384 -8.38010 -6.33587 -0.74682 1.29415 1.35172 1.41668 1.62881 2.29138 2.65712 2.80232 2.96190 3.19334 3.55812 3.77204 3.80496 3.98887 4.01556 4.08341 4.20081 4.23628 4.24644 4.26284 4.38673 4.49287 4.52948 4.53920 4.59274 4.69436 4.74743 4.77232 4.79562 4.85538 4.90321 4.95685 4.99448 5.04173 5.12293 5.13373 5.19946 5.29293 5.36389 5.39079 5.51721 5.57055 5.63276 6.25697 6.26955 6.67798 7.29067 8.77928 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023918 B = 0.003607 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.398962 B = 7761.246587 C = 8159.326344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.396 6.396 4 C 0.079 3.921 5 H 0.057 0.943 6 C -0.132 4.132 7 C -0.126 4.126 8 C 0.101 3.899 9 N -0.996 5.996 10 S 2.611 3.389 11 O -0.982 6.982 12 O -0.977 6.977 13 C -0.582 4.582 14 C 0.046 3.954 15 C -0.185 4.185 16 C -0.174 4.174 17 C -0.510 4.510 18 H 0.049 0.951 19 C 0.031 3.969 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.301 1.301 24 H -0.218 1.218 25 C 0.115 3.885 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.267 0.733 46 H 0.093 0.907 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 -17.518 13.805 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.019 3.981 5 H 0.075 0.925 6 C -0.170 4.170 7 C -0.165 4.165 8 C -0.024 4.024 9 N -0.836 5.836 10 S 2.709 3.291 11 O -0.973 6.973 12 O -0.967 6.967 13 C -0.713 4.713 14 C 0.043 3.957 15 C -0.242 4.242 16 C -0.231 4.231 17 C -0.549 4.549 18 H 0.067 0.933 19 C -0.169 4.169 20 N -0.568 5.568 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.230 1.230 24 H -0.143 1.143 25 C -0.010 4.010 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.043 -17.932 13.250 24.881 hybrid contribution 0.380 0.678 -0.930 1.212 sum -10.664 -17.254 12.320 23.732 Atomic orbital electron populations 1.21760 0.92640 1.03350 1.02823 1.22719 0.96470 0.82912 1.00678 1.87847 1.20399 1.27994 1.95234 1.22349 0.81185 0.97579 0.96949 0.92521 1.21957 0.95640 1.03833 0.95578 1.21791 0.95350 0.97156 1.02249 1.21742 0.98908 1.00152 0.81560 1.57585 1.16791 1.87916 1.21287 1.04890 0.73155 0.78235 0.72815 1.93500 1.72672 1.74898 1.56180 1.93515 1.41622 1.79279 1.82319 1.30439 1.09873 1.23426 1.07600 1.18200 0.91454 0.96141 0.89887 1.22831 1.02056 0.99949 0.99385 1.22696 0.98400 0.99235 1.02817 1.20889 1.26643 0.89866 1.17497 0.93288 1.25636 0.95110 0.95758 1.00355 1.70104 1.36686 1.15443 1.34533 0.86896 0.77267 0.81787 0.80525 1.20200 1.22953 1.14265 1.21428 0.78871 0.98542 1.02204 0.89267 0.91808 0.92516 0.93440 0.92127 0.90101 0.90379 0.87584 0.92284 0.88925 0.88827 0.84318 0.84468 0.93555 0.92085 0.91252 0.91652 0.93082 0.92529 0.92410 0.88845 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.05 0.77 6.47 71.98 0.47 1.23 16 3 O -0.40 -8.24 9.99 -148.98 -1.49 -9.73 16 4 C 0.08 1.61 2.76 30.67 0.08 1.70 16 5 H 0.06 1.23 7.79 -2.38 -0.02 1.22 16 6 C -0.13 -2.06 5.50 30.62 0.17 -1.89 16 7 C -0.13 -1.98 6.06 30.53 0.19 -1.80 16 8 C 0.10 1.96 6.40 86.22 0.55 2.51 16 9 N -1.00 -24.76 3.23 -513.85 -1.66 -26.42 16 10 S 2.61 86.31 4.49 -56.49 -0.25 86.05 16 11 O -0.98 -36.66 14.21 -127.65 -1.81 -38.48 16 12 O -0.98 -35.80 14.44 -127.65 -1.84 -37.64 16 13 C -0.58 -20.76 5.10 71.98 0.37 -20.40 16 14 C 0.05 2.05 0.52 -52.93 -0.03 2.03 16 15 C -0.19 -8.05 7.33 71.98 0.53 -7.52 16 16 C -0.17 -7.64 6.89 71.98 0.50 -7.15 16 17 C -0.51 -27.72 8.60 25.60 0.22 -27.50 16 18 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 19 C 0.03 1.75 5.22 84.66 0.44 2.19 16 20 N -0.93 -56.45 13.96 21.45 0.30 -56.15 16 21 Si 0.91 43.56 22.94 68.60 1.57 45.14 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.22 -9.58 4.63 99.48 0.46 -9.12 16 25 C 0.12 2.65 6.09 86.36 0.53 3.17 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.06 0.78 7.86 -2.39 -0.02 0.76 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.02 7.86 -2.39 -0.02 1.00 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.94 6.85 -2.39 -0.02 1.92 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 38 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 39 H 0.05 2.05 2.66 -2.39 -0.01 2.04 16 40 H 0.06 2.47 5.46 -2.39 -0.01 2.45 16 41 H 0.07 2.85 8.14 -2.39 -0.02 2.84 16 42 H 0.06 2.71 8.11 -2.39 -0.02 2.69 16 43 H 0.05 2.07 6.23 -2.39 -0.01 2.06 16 44 H 0.06 2.56 4.03 -2.39 -0.01 2.55 16 45 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 2.24 6.86 -2.39 -0.02 2.23 16 Total: -1.00 -69.54 357.00 0.26 -69.29 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.70 Total: 22.49 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 4.75 Total: -54.56 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.36 Total: -82.56 kcal Atomic # 8 Polarization: -80.70 SS G_CDS: -5.14 Total: -85.84 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.57 Total: 45.14 kcal Atomic # 16 Polarization: 86.31 SS G_CDS: -0.25 Total: 86.05 kcal Total: -69.54 0.26 -69.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.617 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds