Wall clock time and date at job start Tue Mar 31 2020 12:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47002 * 2 1 4 4 C 1.46495 * 119.99524 * 85.00375 * 3 2 1 5 5 C 1.53010 * 109.47368 * 85.80827 * 4 3 2 6 6 H 1.08991 * 110.74732 * 50.84595 * 5 4 3 7 7 C 1.55298 * 110.84822 * 174.32011 * 5 4 3 8 8 C 1.54949 * 100.93948 * 152.32251 * 7 5 4 9 9 O 1.43646 * 105.13480 * 323.55040 * 8 7 5 10 10 C 1.43233 * 109.96880 * 24.43266 * 9 8 7 11 11 S 1.65597 * 120.00024 * 265.00084 * 3 2 1 12 12 O 1.42100 * 104.27895 * 31.19083 * 11 3 2 13 13 O 1.42104 * 104.27601 * 159.04975 * 11 3 2 14 14 C 1.81400 * 104.45100 * 275.12081 * 11 3 2 15 15 C 1.53002 * 109.47305 * 180.02562 * 14 11 3 16 16 C 1.53003 * 109.46712 * 299.99741 * 15 14 11 17 17 C 1.52999 * 109.47365 * 59.99585 * 15 14 11 18 18 C 1.50696 * 109.47153 * 180.02562 * 15 14 11 19 19 H 1.08000 * 120.00375 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99768 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99918 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99901 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.46832 * 89.99912 * 22 20 18 24 24 H 1.48495 * 109.47268 * 209.99844 * 22 20 18 25 25 H 1.48501 * 109.47377 * 330.00529 * 22 20 18 26 26 H 1.09006 * 109.46996 * 299.99688 * 1 2 3 27 27 H 1.09005 * 109.47609 * 59.99620 * 1 2 3 28 28 H 1.08998 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46996 * 240.00312 * 2 1 3 30 30 H 1.08998 * 109.47330 * 120.00173 * 2 1 3 31 31 H 1.08994 * 109.47513 * 325.80383 * 4 3 2 32 32 H 1.09005 * 109.46840 * 205.80075 * 4 3 2 33 33 H 1.08999 * 111.12696 * 270.24087 * 7 5 4 34 34 H 1.09002 * 111.12836 * 34.40393 * 7 5 4 35 35 H 1.08994 * 110.30910 * 82.47530 * 8 7 5 36 36 H 1.09000 * 110.30510 * 204.64176 * 8 7 5 37 37 H 1.09002 * 109.82901 * 238.76699 * 10 9 8 38 38 H 1.09003 * 109.83292 * 117.80088 * 10 9 8 39 39 H 1.08999 * 109.46816 * 300.00148 * 14 11 3 40 40 H 1.08997 * 109.47009 * 60.00128 * 14 11 3 41 41 H 1.09008 * 109.46900 * 60.00229 * 16 15 14 42 42 H 1.09004 * 109.46974 * 179.97438 * 16 15 14 43 43 H 1.08997 * 109.47345 * 300.00149 * 16 15 14 44 44 H 1.09004 * 109.46624 * 60.00305 * 17 15 14 45 45 H 1.08994 * 109.47033 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47243 * 300.00738 * 17 15 14 47 47 H 0.97003 * 119.99674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.5235 1.7996 1.8818 6 1 4.3200 1.9498 1.1532 7 6 3.7644 2.6630 3.1500 8 6 4.7222 1.7465 3.9521 9 8 4.2643 0.4094 3.6956 10 6 3.5567 0.3650 2.4510 11 16 2.4121 2.1203 -1.4286 12 8 1.5339 1.5345 -2.3799 13 8 2.3514 3.5090 -1.1333 14 6 4.1242 1.6111 -1.7448 15 6 4.6092 2.2375 -3.0538 16 6 3.7169 1.7687 -4.2048 17 6 4.5424 3.7622 -2.9450 18 6 6.0313 1.8139 -3.3167 19 1 6.5387 1.1634 -2.6198 20 6 6.6847 2.2570 -4.4471 21 7 6.0667 3.0488 -5.2960 22 14 8.4478 1.7326 -4.7727 23 1 8.4522 0.4761 -5.5644 24 1 9.1491 2.7986 -5.5321 25 1 9.1435 1.5057 -3.4805 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.3703 1.7991 1.9504 32 1 2.0779 3.1796 1.0776 33 1 4.2452 3.6078 2.8965 34 1 2.8345 2.8310 3.6934 35 1 5.7465 1.8698 3.6006 36 1 4.6572 1.9709 5.0168 37 1 2.5398 0.0090 2.6164 38 1 4.0729 -0.2969 1.7556 39 1 4.7599 1.9454 -0.9250 40 1 4.1718 0.5249 -1.8219 41 1 2.6880 2.0747 -4.0148 42 1 4.0621 2.2153 -5.1373 43 1 3.7644 0.6825 -4.2823 44 1 5.1781 4.0961 -2.1250 45 1 4.8875 4.2084 -3.8777 46 1 3.5136 4.0681 -2.7550 47 1 6.5263 3.3602 -6.0915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590745264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:28 Heat of formation + Delta-G solvation = -124.278264 kcal Electronic energy + Delta-G solvation = -27406.318990 eV Core-core repulsion = 23716.309538 eV Total energy + Delta-G solvation = -3690.009452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.71013 -36.86828 -36.65813 -36.29394 -35.29608 -32.95341 -31.68847 -30.39432 -29.18835 -26.78394 -25.74859 -25.58101 -25.25339 -22.62004 -22.45524 -20.97020 -19.41804 -18.33058 -17.44806 -16.95813 -16.26747 -16.00818 -15.95035 -15.33695 -14.89938 -14.79241 -14.64152 -13.99974 -13.71709 -13.40642 -13.14919 -13.07587 -12.90073 -12.59643 -12.53031 -12.41425 -12.09938 -11.81823 -11.64877 -11.47540 -11.44931 -11.16837 -11.10560 -11.04294 -10.94515 -10.80522 -10.77099 -10.67941 -10.38173 -10.28937 -10.12362 -9.68661 -9.67117 -9.59468 -9.00356 -8.66086 -8.42565 -6.05827 -4.17911 0.79286 3.01978 3.23999 3.31459 3.33425 3.73107 4.27213 4.29676 4.37295 4.47831 4.61827 4.72842 4.78041 5.00774 5.07185 5.16686 5.19122 5.22357 5.32478 5.42879 5.53162 5.54787 5.57939 5.59362 5.66530 5.71018 5.73256 5.78937 5.85992 6.03465 6.16611 6.26839 6.35621 6.66999 6.67612 6.76465 6.84248 6.87486 7.01070 7.28189 7.47223 7.65319 7.94972 8.06758 8.30285 8.80586 9.47706 10.95477 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.004861 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.103689 B = 5759.054363 C = 6915.356065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -1.008 6.008 4 C 0.127 3.873 5 C -0.150 4.150 6 H 0.092 0.908 7 C -0.150 4.150 8 C 0.051 3.949 9 O -0.388 6.388 10 C 0.057 3.943 11 S 2.590 3.410 12 O -0.959 6.959 13 O -0.962 6.962 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.502 4.502 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.027 0.973 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -3.584 15.327 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.843 5.843 4 C 0.001 3.999 5 C -0.170 4.170 6 H 0.110 0.890 7 C -0.188 4.188 8 C -0.026 4.026 9 O -0.308 6.308 10 C -0.019 4.019 11 S 2.689 3.311 12 O -0.949 6.949 13 O -0.953 6.953 14 C -0.716 4.716 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.046 0.954 42 H 0.114 0.886 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.046 0.954 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.632 -3.118 14.810 16.950 hybrid contribution 1.616 -0.531 -0.150 1.707 sum -6.017 -3.650 14.660 16.261 Atomic orbital electron populations 1.22207 0.95966 1.02125 1.02823 1.21275 0.94840 0.81813 1.02971 1.57886 1.80637 1.23475 1.22288 1.21275 0.95105 0.98148 0.85323 1.23361 1.00026 0.95335 0.98312 0.88998 1.23278 1.00676 0.99448 0.95439 1.23369 0.97513 0.81574 1.00109 1.88385 1.74251 1.28742 1.39372 1.23301 0.96763 0.96514 0.85358 1.05823 0.78619 0.74334 0.72299 1.93540 1.63109 1.78635 1.59626 1.93517 1.87668 1.30878 1.83222 1.30606 1.20048 1.10853 1.10068 1.17927 0.96532 0.92026 0.85501 1.22273 0.96054 1.00079 1.03682 1.22266 0.98402 0.97601 1.03784 1.20933 0.96006 1.30044 1.07152 0.92352 1.24933 0.98066 0.94806 0.95890 1.69800 1.36726 1.33499 1.12124 0.86546 0.84516 0.78315 0.78335 1.20615 1.21099 1.19965 0.92674 0.91318 0.91774 0.90119 0.90615 0.90051 0.88131 0.89265 0.90010 0.92002 0.89813 0.91025 0.91204 0.86619 0.86522 0.95417 0.88642 0.94496 0.94535 0.88655 0.95408 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.12 1.32 5.81 -4.04 -0.02 1.29 16 3 N -1.01 -13.47 2.70 -114.37 -0.31 -13.78 16 4 C 0.13 1.44 5.09 -4.04 -0.02 1.42 16 5 C -0.15 -1.60 3.22 -88.67 -0.29 -1.89 16 6 H 0.09 1.09 7.10 -51.93 -0.37 0.72 16 7 C -0.15 -1.34 6.62 -24.48 -0.16 -1.50 16 8 C 0.05 0.48 7.78 38.19 0.30 0.78 16 9 O -0.39 -4.65 11.36 -35.23 -0.40 -5.05 16 10 C 0.06 0.60 6.09 37.88 0.23 0.83 16 11 S 2.59 47.06 4.38 -107.50 -0.47 46.59 16 12 O -0.96 -19.63 14.39 -57.54 -0.83 -20.46 16 13 O -0.96 -19.52 14.05 -57.54 -0.81 -20.33 16 14 C -0.58 -11.17 5.12 37.16 0.19 -10.98 16 15 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 16 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 17 C -0.16 -3.97 7.78 37.16 0.29 -3.68 16 18 C -0.50 -13.06 8.01 -34.44 -0.28 -13.33 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -23.96 9.35 55.43 0.52 -23.44 16 22 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.90 7.72 -51.93 -0.40 0.50 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 30 H 0.08 0.67 5.57 -51.93 -0.29 0.38 16 31 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 32 H 0.10 1.23 6.78 -51.93 -0.35 0.88 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.63 8.04 -51.93 -0.42 0.21 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.67 6.46 -51.93 -0.34 0.33 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.12 2.02 7.10 -51.92 -0.37 1.65 16 40 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.03 0.64 5.47 -51.92 -0.28 0.36 16 42 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 46 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 47 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -31.24 363.06 -9.00 -40.24 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.89 Total: 3.96 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 0.74 Total: -28.72 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.21 Total: -37.22 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -2.04 Total: -45.83 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 47.06 SS G_CDS: -0.47 Total: 46.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.24 -9.00 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.041 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds