Wall clock time and date at job start Tue Mar 31 2020 12:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47002 * 2 1 4 4 C 1.46495 * 119.99524 * 85.00375 * 3 2 1 5 5 C 1.53010 * 109.47368 * 85.80827 * 4 3 2 6 6 H 1.08991 * 110.74732 * 50.84595 * 5 4 3 7 7 C 1.55298 * 110.84822 * 174.32011 * 5 4 3 8 8 C 1.54949 * 100.93948 * 152.32251 * 7 5 4 9 9 O 1.43646 * 105.13480 * 323.55040 * 8 7 5 10 10 C 1.43233 * 109.96880 * 24.43266 * 9 8 7 11 11 S 1.65597 * 120.00024 * 265.00084 * 3 2 1 12 12 O 1.42100 * 104.27895 * 31.19083 * 11 3 2 13 13 O 1.42104 * 104.27601 * 159.04975 * 11 3 2 14 14 C 1.81400 * 104.45100 * 275.12081 * 11 3 2 15 15 C 1.53002 * 109.47305 * 180.02562 * 14 11 3 16 16 C 1.53003 * 109.46712 * 299.99741 * 15 14 11 17 17 C 1.52999 * 109.47365 * 59.99585 * 15 14 11 18 18 C 1.50696 * 109.47153 * 180.02562 * 15 14 11 19 19 H 1.08000 * 120.00375 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99768 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99918 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99901 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.46832 * 89.99912 * 22 20 18 24 24 H 1.48495 * 109.47268 * 209.99844 * 22 20 18 25 25 H 1.48501 * 109.47377 * 330.00529 * 22 20 18 26 26 H 1.09006 * 109.46996 * 299.99688 * 1 2 3 27 27 H 1.09005 * 109.47609 * 59.99620 * 1 2 3 28 28 H 1.08998 * 109.47214 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46996 * 240.00312 * 2 1 3 30 30 H 1.08998 * 109.47330 * 120.00173 * 2 1 3 31 31 H 1.08994 * 109.47513 * 325.80383 * 4 3 2 32 32 H 1.09005 * 109.46840 * 205.80075 * 4 3 2 33 33 H 1.08999 * 111.12696 * 270.24087 * 7 5 4 34 34 H 1.09002 * 111.12836 * 34.40393 * 7 5 4 35 35 H 1.08994 * 110.30910 * 82.47530 * 8 7 5 36 36 H 1.09000 * 110.30510 * 204.64176 * 8 7 5 37 37 H 1.09002 * 109.82901 * 238.76699 * 10 9 8 38 38 H 1.09003 * 109.83292 * 117.80088 * 10 9 8 39 39 H 1.08999 * 109.46816 * 300.00148 * 14 11 3 40 40 H 1.08997 * 109.47009 * 60.00128 * 14 11 3 41 41 H 1.09008 * 109.46900 * 60.00229 * 16 15 14 42 42 H 1.09004 * 109.46974 * 179.97438 * 16 15 14 43 43 H 1.08997 * 109.47345 * 300.00149 * 16 15 14 44 44 H 1.09004 * 109.46624 * 60.00305 * 17 15 14 45 45 H 1.08994 * 109.47033 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47243 * 300.00738 * 17 15 14 47 47 H 0.97003 * 119.99674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.5235 1.7996 1.8818 6 1 4.3200 1.9498 1.1532 7 6 3.7644 2.6630 3.1500 8 6 4.7222 1.7465 3.9521 9 8 4.2643 0.4094 3.6956 10 6 3.5567 0.3650 2.4510 11 16 2.4121 2.1203 -1.4286 12 8 1.5339 1.5345 -2.3799 13 8 2.3514 3.5090 -1.1333 14 6 4.1242 1.6111 -1.7448 15 6 4.6092 2.2375 -3.0538 16 6 3.7169 1.7687 -4.2048 17 6 4.5424 3.7622 -2.9450 18 6 6.0313 1.8139 -3.3167 19 1 6.5387 1.1634 -2.6198 20 6 6.6847 2.2570 -4.4471 21 7 6.0667 3.0488 -5.2960 22 14 8.4478 1.7326 -4.7727 23 1 8.4522 0.4761 -5.5644 24 1 9.1491 2.7986 -5.5321 25 1 9.1435 1.5057 -3.4805 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.3703 1.7991 1.9504 32 1 2.0779 3.1796 1.0776 33 1 4.2452 3.6078 2.8965 34 1 2.8345 2.8310 3.6934 35 1 5.7465 1.8698 3.6006 36 1 4.6572 1.9709 5.0168 37 1 2.5398 0.0090 2.6164 38 1 4.0729 -0.2969 1.7556 39 1 4.7599 1.9454 -0.9250 40 1 4.1718 0.5249 -1.8219 41 1 2.6880 2.0747 -4.0148 42 1 4.0621 2.2153 -5.1373 43 1 3.7644 0.6825 -4.2823 44 1 5.1781 4.0961 -2.1250 45 1 4.8875 4.2084 -3.8777 46 1 3.5136 4.0681 -2.7550 47 1 6.5263 3.3602 -6.0915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590745264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:27 Heat of formation + Delta-G solvation = -144.391572 kcal Electronic energy + Delta-G solvation = -27407.191168 eV Core-core repulsion = 23716.309538 eV Total energy + Delta-G solvation = -3690.881630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51518 -38.19402 -38.16073 -37.80312 -36.84207 -33.81388 -33.63021 -31.23543 -30.02205 -28.41170 -27.71529 -27.26651 -26.50380 -23.53131 -23.24381 -21.86910 -21.19285 -19.66371 -18.76036 -17.91495 -17.86660 -17.24554 -16.99612 -16.74004 -16.66660 -15.90617 -15.68397 -15.19895 -14.79687 -14.72292 -14.58476 -14.41786 -14.07287 -13.98621 -13.76734 -13.67420 -13.28183 -13.09615 -12.99671 -12.90177 -12.79546 -12.62769 -12.54630 -12.47163 -12.24387 -12.20181 -12.15388 -11.98667 -11.77168 -11.70703 -11.61478 -11.55384 -11.33585 -10.65053 -10.44654 -10.43120 -9.97190 -8.04639 -6.23294 -0.63949 1.42276 1.44347 1.52703 1.77810 2.42650 2.87943 2.99170 3.17038 3.23216 3.52199 3.59727 3.83511 3.96056 4.04711 4.11698 4.28127 4.31870 4.34359 4.41706 4.49346 4.58307 4.64874 4.75059 4.78220 4.81245 4.83749 4.84505 4.93125 4.95326 4.96681 5.00022 5.06111 5.08381 5.24420 5.28127 5.36976 5.41928 5.48554 5.62787 5.71193 5.95228 6.07886 6.09611 6.32510 6.81266 7.45104 8.95188 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.004861 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.103689 B = 5759.054363 C = 6915.356065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.997 5.997 4 C 0.124 3.876 5 C -0.152 4.152 6 H 0.076 0.924 7 C -0.146 4.146 8 C 0.046 3.954 9 O -0.408 6.408 10 C 0.055 3.945 11 S 2.607 3.393 12 O -0.985 6.985 13 O -0.987 6.987 14 C -0.588 4.588 15 C 0.070 3.930 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.517 4.517 19 H 0.061 0.939 20 C 0.019 3.981 21 N -0.907 5.907 22 Si 0.952 3.048 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.268 1.268 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 -4.702 17.639 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 N -0.835 5.835 4 C -0.001 4.001 5 C -0.173 4.173 6 H 0.094 0.906 7 C -0.184 4.184 8 C -0.030 4.030 9 O -0.328 6.328 10 C -0.021 4.021 11 S 2.705 3.295 12 O -0.975 6.975 13 O -0.977 6.977 14 C -0.720 4.720 15 C 0.068 3.932 16 C -0.216 4.216 17 C -0.216 4.216 18 C -0.556 4.556 19 H 0.079 0.921 20 C -0.181 4.181 21 N -0.546 5.546 22 Si 0.778 3.222 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.193 1.193 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.844 -4.238 17.117 19.300 hybrid contribution 1.639 -0.201 -0.799 1.834 sum -6.205 -4.438 16.318 18.013 Atomic orbital electron populations 1.22220 0.95374 1.03404 1.02146 1.21592 0.95396 0.80493 1.04341 1.57521 1.80050 1.24465 1.21414 1.21502 0.96564 0.97480 0.84579 1.23326 0.99046 0.96203 0.98695 0.90566 1.23297 1.01437 0.99122 0.94525 1.23513 0.97378 0.80796 1.01340 1.88363 1.74585 1.30059 1.39816 1.23368 0.97559 0.96169 0.84983 1.05011 0.77723 0.73766 0.73006 1.93502 1.63397 1.78986 1.61629 1.93476 1.87694 1.32686 1.83847 1.30553 1.21735 1.11620 1.08050 1.17910 0.95878 0.91802 0.87616 1.22193 0.96400 1.00003 1.03020 1.22184 0.98582 0.98284 1.02522 1.21273 0.97187 1.29923 1.07205 0.92082 1.25658 1.01517 0.94968 0.95923 1.69941 1.37956 1.34324 1.12391 0.85644 0.80450 0.77797 0.78266 1.20343 1.21163 1.19257 0.91153 0.94168 0.89586 0.90608 0.87428 0.86881 0.89164 0.88916 0.88263 0.92449 0.88005 0.89265 0.91607 0.85135 0.84943 0.94994 0.91089 0.94186 0.94163 0.91112 0.94958 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 10.24 71.98 0.74 -2.53 16 2 C 0.11 2.11 5.81 86.38 0.50 2.62 16 3 N -1.00 -24.62 2.70 -515.77 -1.39 -26.02 16 4 C 0.12 2.46 5.09 86.38 0.44 2.90 16 5 C -0.15 -2.90 3.22 -9.53 -0.03 -2.93 16 6 H 0.08 1.69 7.10 -2.39 -0.02 1.67 16 7 C -0.15 -2.23 6.62 32.05 0.21 -2.02 16 8 C 0.05 0.76 7.78 72.65 0.56 1.33 16 9 O -0.41 -8.80 11.36 -148.98 -1.69 -10.49 16 10 C 0.06 1.01 6.09 72.45 0.44 1.45 16 11 S 2.61 93.00 4.38 -56.49 -0.25 92.75 16 12 O -0.98 -40.15 14.39 -127.65 -1.84 -41.99 16 13 O -0.99 -39.70 14.05 -127.65 -1.79 -41.49 16 14 C -0.59 -22.12 5.12 71.98 0.37 -21.75 16 15 C 0.07 3.36 0.52 -52.93 -0.03 3.34 16 16 C -0.16 -7.88 7.77 71.98 0.56 -7.32 16 17 C -0.16 -7.83 7.78 71.98 0.56 -7.27 16 18 C -0.52 -26.86 8.01 25.60 0.21 -26.66 16 19 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 20 C 0.02 1.00 5.15 84.66 0.44 1.43 16 21 N -0.91 -50.22 9.35 21.45 0.20 -50.02 16 22 Si 0.95 42.09 29.54 68.60 2.03 44.11 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.04 0.99 7.72 -2.38 -0.02 0.98 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.61 7.75 -2.38 -0.02 1.59 16 30 H 0.11 1.48 5.57 -2.39 -0.01 1.47 16 31 H 0.11 1.58 7.87 -2.39 -0.02 1.56 16 32 H 0.09 2.04 6.78 -2.38 -0.02 2.02 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.18 8.04 -2.39 -0.02 1.16 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.30 6.46 -2.39 -0.02 1.28 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.13 4.44 7.10 -2.39 -0.02 4.43 16 40 H 0.13 4.47 8.14 -2.39 -0.02 4.45 16 41 H 0.03 1.51 5.47 -2.38 -0.01 1.50 16 42 H 0.07 3.86 6.07 -2.38 -0.01 3.85 16 43 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 46 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 47 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -67.41 363.06 1.17 -66.23 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.94 Total: 24.30 kcal Atomic # 6 Polarization: -62.36 SS G_CDS: 4.97 Total: -57.40 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.19 Total: -76.03 kcal Atomic # 8 Polarization: -88.65 SS G_CDS: -5.32 Total: -93.97 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 93.00 SS G_CDS: -0.25 Total: 92.75 kcal Total: -67.41 1.17 -66.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.161 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds