Wall clock time and date at job start Tue Mar 31 2020 13:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47308 * 2 1 4 4 C 1.42894 * 114.00151 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47086 * 30.00454 * 4 3 2 6 6 C 1.50696 * 109.47336 * 270.00500 * 4 3 2 7 7 O 1.21279 * 119.99890 * 354.99575 * 6 4 3 8 8 N 1.34777 * 119.99775 * 175.00266 * 6 4 3 9 9 C 1.47014 * 125.65389 * 359.68771 * 8 6 4 10 10 C 1.54329 * 107.27031 * 178.85298 * 9 8 6 11 11 C 1.55158 * 103.01991 * 338.13924 * 10 9 8 12 12 O 1.42907 * 111.00276 * 277.23353 * 11 10 9 13 13 C 1.50700 * 111.03961 * 153.39475 * 11 10 9 14 14 H 1.07997 * 120.00300 * 247.78800 * 13 11 10 15 15 C 1.37881 * 119.99849 * 67.78544 * 13 11 10 16 16 N 1.31521 * 119.99924 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99956 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46912 * 90.00203 * 17 15 13 19 19 H 1.48498 * 109.47015 * 209.99961 * 17 15 13 20 20 H 1.48496 * 109.47084 * 329.99747 * 17 15 13 21 21 C 1.47427 * 125.64501 * 179.97438 * 8 6 4 22 22 C 1.50702 * 109.47163 * 149.99840 * 4 3 2 23 23 C 1.38234 * 120.00257 * 220.00277 * 22 4 3 24 24 C 1.38230 * 119.99864 * 179.97438 * 23 22 4 25 25 C 1.38235 * 120.00326 * 0.02562 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99519 * 39.98207 * 22 4 3 28 28 H 1.08994 * 109.47469 * 59.99634 * 1 2 3 29 29 H 1.09004 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46867 * 299.99662 * 1 2 3 31 31 H 1.09004 * 109.47035 * 239.99977 * 2 1 3 32 32 H 1.09000 * 109.47029 * 120.00436 * 2 1 3 33 33 H 1.09002 * 109.88049 * 298.39761 * 9 8 6 34 34 H 1.09006 * 109.88357 * 59.55671 * 9 8 6 35 35 H 1.09003 * 110.85373 * 219.67245 * 10 9 8 36 36 H 1.09003 * 110.52041 * 96.45183 * 10 9 8 37 37 H 0.96701 * 113.99471 * 292.19308 * 12 11 10 38 38 H 0.96997 * 120.00039 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.37111 * 322.92818 * 21 8 6 40 40 H 1.09004 * 110.36841 * 85.14185 * 21 8 6 41 41 H 1.08002 * 119.99744 * 359.97438 * 23 22 4 42 42 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00616 * 179.70664 * 25 24 23 44 44 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.00203 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5148 6 6 3.9323 1.4994 1.4200 7 8 3.1436 1.5286 2.3408 8 7 5.2572 1.5023 1.6671 9 6 6.3186 1.4631 0.6506 10 6 7.6690 1.5124 1.3960 11 6 7.2904 2.1389 2.7641 12 8 7.2317 3.5640 2.6761 13 6 8.2509 1.7061 3.8416 14 1 7.9133 1.0599 4.6383 15 6 9.5609 2.1353 3.8104 16 7 9.9722 2.9219 2.8399 17 14 10.7517 1.5984 5.1457 18 1 11.4164 0.3349 4.7372 19 1 11.7765 2.6537 5.3486 20 1 10.0088 1.3798 6.4128 21 6 5.8822 1.5393 3.0018 22 6 3.8342 2.7264 -0.7110 23 6 4.9321 2.7282 -1.5509 24 6 5.3017 3.8897 -2.2029 25 6 4.5737 5.0496 -2.0147 26 6 3.4758 5.0479 -1.1748 27 6 3.1059 3.8862 -0.5230 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.2451 0.5414 0.0733 34 1 6.2305 2.3251 -0.0108 35 1 8.3817 2.1446 0.8664 36 1 8.0686 0.5071 1.5296 37 1 8.0898 3.9845 2.5275 38 1 10.8938 3.2235 2.8178 39 1 5.3066 2.1770 3.6727 40 1 5.9613 0.5323 3.4117 41 1 5.5011 1.8220 -1.6977 42 1 6.1597 3.8912 -2.8588 43 1 4.8652 5.9583 -2.5204 44 1 2.9072 5.9542 -1.0273 45 1 2.2476 3.8847 0.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:07 Heat of formation + Delta-G solvation = -97.850433 kcal Electronic energy + Delta-G solvation = -28062.942183 eV Core-core repulsion = 24238.634777 eV Total energy + Delta-G solvation = -3824.307406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31901 -38.63170 -37.92358 -36.71221 -34.35787 -32.66039 -32.15098 -30.97769 -30.55775 -29.82642 -28.32917 -26.80534 -24.84997 -23.06866 -22.71018 -22.04855 -21.50000 -19.80321 -18.97495 -17.48066 -17.21696 -16.72704 -16.57067 -15.63617 -15.27318 -15.00179 -14.88721 -14.78366 -14.48202 -14.09907 -13.84521 -13.46789 -13.26420 -13.08093 -12.69533 -12.52489 -12.31477 -12.30963 -12.10157 -11.72838 -11.71701 -11.40692 -11.36920 -11.21212 -11.02651 -10.93729 -10.73784 -10.63684 -10.51284 -10.25890 -10.06579 -9.46292 -9.21733 -8.78986 -8.71473 -8.49453 -8.21399 -7.95948 -6.32132 -4.39926 1.34672 1.51394 2.95273 3.17405 3.25279 3.27782 3.32088 3.69118 4.01103 4.24378 4.71875 4.81733 4.87814 4.97382 5.02826 5.07764 5.11131 5.19201 5.27579 5.34808 5.51487 5.55437 5.59315 5.69136 5.72759 5.84863 5.88040 5.97818 6.02289 6.04768 6.12885 6.25654 6.42485 6.50327 6.58824 6.60129 6.63645 6.85270 6.92085 7.04812 7.12313 7.27432 7.30562 7.71297 7.96953 8.10483 8.59130 8.63746 9.29290 9.47574 10.75483 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.004188 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.513866 B = 6684.317581 C = 7896.204609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.124 3.876 5 H 0.088 0.912 6 C 0.505 3.495 7 O -0.538 6.538 8 N -0.598 5.598 9 C 0.085 3.915 10 C -0.138 4.138 11 C 0.251 3.749 12 O -0.582 6.582 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.119 3.881 22 C -0.085 4.085 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.082 4.082 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.385 0.615 38 H 0.269 0.731 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 -2.188 -12.242 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.062 3.938 5 H 0.105 0.895 6 C 0.292 3.708 7 O -0.416 6.416 8 N -0.332 5.332 9 C -0.037 4.037 10 C -0.177 4.177 11 C 0.210 3.790 12 O -0.392 6.392 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.537 5.537 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.003 4.003 22 C -0.086 4.086 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.100 4.100 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.818 -2.037 -11.736 16.091 hybrid contribution 1.668 -0.462 0.585 1.827 sum -9.150 -2.499 -11.151 14.639 Atomic orbital electron populations 1.21695 0.93470 1.02087 1.03176 1.22573 0.95888 0.83606 1.00086 1.87966 1.17863 1.26663 1.94519 1.20621 0.83353 0.97044 0.92777 0.89477 1.20592 0.81476 0.77621 0.91154 1.90667 1.54498 1.50670 1.45786 1.48590 1.04345 1.70578 1.09696 1.22644 0.89365 0.99903 0.91833 1.23206 0.93214 1.02064 0.99229 1.19542 0.88821 0.79610 0.91007 1.86119 1.37236 1.20326 1.95567 1.21490 0.94466 1.31040 1.10425 0.91666 1.24985 0.98066 0.94142 0.95750 1.69566 1.17938 1.34353 1.31843 0.86400 0.80292 0.78307 0.81900 1.20457 1.20985 1.19666 1.22403 0.94558 1.00144 0.83179 1.19298 0.97067 0.93892 0.98341 1.20979 0.95917 0.99123 0.95930 1.21043 0.99949 0.92764 1.00197 1.21171 0.95411 0.98069 0.98362 1.21131 0.97624 0.97931 0.97500 1.20995 0.99090 0.91782 0.98140 0.91988 0.91183 0.91552 0.93455 0.92929 0.93201 0.90763 0.89823 0.91502 0.76309 0.92070 0.91125 0.91156 0.85643 0.85713 0.86087 0.86014 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.05 0.69 6.46 37.16 0.24 0.93 16 3 O -0.35 -5.52 8.85 -55.09 -0.49 -6.01 16 4 C 0.12 1.95 2.20 -29.04 -0.06 1.89 16 5 H 0.09 1.16 7.64 -51.92 -0.40 0.76 16 6 C 0.50 10.01 7.17 -10.99 -0.08 9.94 16 7 O -0.54 -12.41 16.76 -14.30 -0.24 -12.65 16 8 N -0.60 -12.10 3.32 -170.53 -0.57 -12.66 16 9 C 0.09 1.53 5.28 -3.07 -0.02 1.51 16 10 C -0.14 -2.92 5.64 -24.89 -0.14 -3.06 16 11 C 0.25 6.05 0.89 -89.63 -0.08 5.97 16 12 O -0.58 -15.09 13.18 -35.23 -0.46 -15.55 16 13 C -0.54 -13.85 8.25 -34.44 -0.28 -14.13 16 14 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 16 N -0.90 -22.83 10.79 55.43 0.60 -22.23 16 17 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 21 C 0.12 2.70 6.08 -2.54 -0.02 2.68 16 22 C -0.09 -1.30 4.52 -104.62 -0.47 -1.78 16 23 C -0.10 -1.36 6.71 -39.59 -0.27 -1.62 16 24 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 25 C -0.11 -1.37 10.05 -39.58 -0.40 -1.76 16 26 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 27 C -0.08 -1.25 9.35 -39.58 -0.37 -1.62 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.07 1.29 4.58 -51.93 -0.24 1.06 16 35 H 0.08 1.84 7.85 -51.93 -0.41 1.44 16 36 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 37 H 0.38 10.03 6.93 45.56 0.32 10.35 16 38 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 39 H 0.07 1.73 8.04 -51.93 -0.42 1.31 16 40 H 0.07 1.53 8.02 -51.93 -0.42 1.12 16 41 H 0.13 1.44 6.97 -52.49 -0.37 1.08 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.13 2.00 7.78 -52.48 -0.41 1.59 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -30.03 366.85 -9.20 -39.23 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.09 Total: 13.75 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.45 Total: -4.37 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.03 Total: -34.89 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.19 Total: -34.21 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.03 -9.20 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.618 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds