Wall clock time and date at job start Tue Mar 31 2020 13:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47308 * 2 1 4 4 C 1.42894 * 114.00151 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47086 * 30.00454 * 4 3 2 6 6 C 1.50696 * 109.47336 * 270.00500 * 4 3 2 7 7 O 1.21279 * 119.99890 * 354.99575 * 6 4 3 8 8 N 1.34777 * 119.99775 * 175.00266 * 6 4 3 9 9 C 1.47014 * 125.65389 * 359.68771 * 8 6 4 10 10 C 1.54329 * 107.27031 * 178.85298 * 9 8 6 11 11 C 1.55158 * 103.01991 * 338.13924 * 10 9 8 12 12 O 1.42907 * 111.00276 * 277.23353 * 11 10 9 13 13 C 1.50700 * 111.03961 * 153.39475 * 11 10 9 14 14 H 1.07997 * 120.00300 * 247.78800 * 13 11 10 15 15 C 1.37881 * 119.99849 * 67.78544 * 13 11 10 16 16 N 1.31521 * 119.99924 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99956 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46912 * 90.00203 * 17 15 13 19 19 H 1.48498 * 109.47015 * 209.99961 * 17 15 13 20 20 H 1.48496 * 109.47084 * 329.99747 * 17 15 13 21 21 C 1.47427 * 125.64501 * 179.97438 * 8 6 4 22 22 C 1.50702 * 109.47163 * 149.99840 * 4 3 2 23 23 C 1.38234 * 120.00257 * 220.00277 * 22 4 3 24 24 C 1.38230 * 119.99864 * 179.97438 * 23 22 4 25 25 C 1.38235 * 120.00326 * 0.02562 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99519 * 39.98207 * 22 4 3 28 28 H 1.08994 * 109.47469 * 59.99634 * 1 2 3 29 29 H 1.09004 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46867 * 299.99662 * 1 2 3 31 31 H 1.09004 * 109.47035 * 239.99977 * 2 1 3 32 32 H 1.09000 * 109.47029 * 120.00436 * 2 1 3 33 33 H 1.09002 * 109.88049 * 298.39761 * 9 8 6 34 34 H 1.09006 * 109.88357 * 59.55671 * 9 8 6 35 35 H 1.09003 * 110.85373 * 219.67245 * 10 9 8 36 36 H 1.09003 * 110.52041 * 96.45183 * 10 9 8 37 37 H 0.96701 * 113.99471 * 292.19308 * 12 11 10 38 38 H 0.96997 * 120.00039 * 180.02562 * 16 15 13 39 39 H 1.08998 * 110.37111 * 322.92818 * 21 8 6 40 40 H 1.09004 * 110.36841 * 85.14185 * 21 8 6 41 41 H 1.08002 * 119.99744 * 359.97438 * 23 22 4 42 42 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00616 * 179.70664 * 25 24 23 44 44 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.00203 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5148 6 6 3.9323 1.4994 1.4200 7 8 3.1436 1.5286 2.3408 8 7 5.2572 1.5023 1.6671 9 6 6.3186 1.4631 0.6506 10 6 7.6690 1.5124 1.3960 11 6 7.2904 2.1389 2.7641 12 8 7.2317 3.5640 2.6761 13 6 8.2509 1.7061 3.8416 14 1 7.9133 1.0599 4.6383 15 6 9.5609 2.1353 3.8104 16 7 9.9722 2.9219 2.8399 17 14 10.7517 1.5984 5.1457 18 1 11.4164 0.3349 4.7372 19 1 11.7765 2.6537 5.3486 20 1 10.0088 1.3798 6.4128 21 6 5.8822 1.5393 3.0018 22 6 3.8342 2.7264 -0.7110 23 6 4.9321 2.7282 -1.5509 24 6 5.3017 3.8897 -2.2029 25 6 4.5737 5.0496 -2.0147 26 6 3.4758 5.0479 -1.1748 27 6 3.1059 3.8862 -0.5230 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 6.2451 0.5414 0.0733 34 1 6.2305 2.3251 -0.0108 35 1 8.3817 2.1446 0.8664 36 1 8.0686 0.5071 1.5296 37 1 8.0898 3.9845 2.5275 38 1 10.8938 3.2235 2.8178 39 1 5.3066 2.1770 3.6727 40 1 5.9613 0.5323 3.4117 41 1 5.5011 1.8220 -1.6977 42 1 6.1597 3.8912 -2.8588 43 1 4.8652 5.9583 -2.5204 44 1 2.9072 5.9542 -1.0273 45 1 2.2476 3.8847 0.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:07 Heat of formation + Delta-G solvation = -116.298621 kcal Electronic energy + Delta-G solvation = -28063.742157 eV Core-core repulsion = 24238.634777 eV Total energy + Delta-G solvation = -3825.107380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68282 -39.93701 -39.29113 -38.20136 -36.15462 -34.13924 -33.75904 -31.99557 -31.67949 -31.34602 -30.00336 -28.20879 -26.56843 -24.13665 -24.03189 -23.14841 -22.67901 -21.59017 -20.47774 -19.21475 -18.65989 -17.94907 -17.82640 -16.99163 -16.81377 -16.59465 -16.38911 -16.09509 -15.75317 -15.44942 -15.08875 -14.91232 -14.78680 -14.27952 -13.99756 -13.89833 -13.81290 -13.47507 -13.37534 -13.20846 -13.17039 -12.98020 -12.87911 -12.59845 -12.48320 -12.29380 -12.25069 -12.03599 -11.87488 -11.82743 -11.52574 -11.31701 -10.67287 -10.49070 -10.14956 -9.86396 -9.66722 -9.49734 -8.25384 -6.40007 0.31516 0.49974 1.41775 1.45002 1.46645 1.54257 1.87402 2.39245 2.57503 2.90121 2.99732 3.49739 3.61052 3.76546 3.82005 4.00568 4.08972 4.13971 4.15655 4.27200 4.30273 4.32679 4.38517 4.43196 4.58042 4.60790 4.66524 4.67086 4.79597 4.87174 4.99753 5.00850 5.13656 5.15497 5.21623 5.24218 5.43750 5.51890 5.52536 5.55552 5.61533 5.77000 6.00521 6.05477 6.08688 6.54797 6.63380 7.05100 7.31397 7.46085 8.80982 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.004188 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.513866 B = 6684.317581 C = 7896.204609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 O -0.370 6.370 4 C 0.134 3.866 5 H 0.119 0.881 6 C 0.498 3.502 7 O -0.582 6.582 8 N -0.600 5.600 9 C 0.091 3.909 10 C -0.128 4.128 11 C 0.238 3.762 12 O -0.596 6.596 13 C -0.564 4.564 14 H 0.055 0.945 15 C 0.039 3.961 16 N -0.908 5.908 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.278 1.278 21 C 0.122 3.878 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.123 4.123 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.109 4.109 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.381 0.619 38 H 0.273 0.727 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 -2.861 -14.664 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.288 6.288 4 C 0.072 3.928 5 H 0.136 0.864 6 C 0.287 3.713 7 O -0.463 6.463 8 N -0.333 5.333 9 C -0.031 4.031 10 C -0.166 4.166 11 C 0.197 3.803 12 O -0.406 6.406 13 C -0.602 4.602 14 H 0.073 0.927 15 C -0.163 4.163 16 N -0.547 5.547 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.203 1.203 21 C -0.001 4.001 22 C -0.105 4.105 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.131 4.131 26 C -0.150 4.150 27 C -0.127 4.127 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.880 -2.717 -14.189 17.502 hybrid contribution 1.348 -0.194 1.356 1.922 sum -8.531 -2.912 -12.833 15.683 Atomic orbital electron populations 1.21715 0.92018 1.03642 1.02656 1.22848 0.97210 0.82417 1.00624 1.87975 1.17888 1.28642 1.94293 1.20603 0.83601 0.98763 0.89787 0.86361 1.21533 0.80759 0.76170 0.92797 1.90633 1.55472 1.52504 1.47673 1.48656 1.05118 1.70577 1.08989 1.22747 0.86665 1.02588 0.91062 1.22991 0.94783 1.01338 0.97528 1.19726 0.89186 0.78781 0.92579 1.86110 1.37021 1.21684 1.95753 1.21701 0.95513 1.31809 1.11172 0.92676 1.25585 0.99112 0.94092 0.97475 1.69618 1.18329 1.34271 1.32489 0.85521 0.78323 0.78245 0.79296 1.19526 1.20560 1.20324 1.22192 0.93875 0.99525 0.84470 1.19387 0.98207 0.93401 0.99468 1.21268 0.95235 1.00567 0.95393 1.21474 1.00460 0.92261 0.99858 1.21569 0.94544 0.99367 0.97607 1.21391 0.98332 0.97840 0.97397 1.21040 0.99352 0.93176 0.99116 0.91198 0.88581 0.93346 0.90546 0.94580 0.88963 0.89707 0.90732 0.91480 0.76762 0.91738 0.94215 0.90776 0.83399 0.82852 0.83279 0.84415 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.04 1.08 6.46 71.98 0.46 1.54 16 3 O -0.37 -11.49 8.85 -129.99 -1.15 -12.64 16 4 C 0.13 4.08 2.20 29.10 0.06 4.14 16 5 H 0.12 2.79 7.64 -2.38 -0.02 2.77 16 6 C 0.50 19.89 7.17 87.66 0.63 20.52 16 7 O -0.58 -27.91 16.76 15.96 0.27 -27.64 16 8 N -0.60 -24.10 3.32 -811.83 -2.70 -26.80 16 9 C 0.09 3.06 5.28 86.73 0.46 3.52 16 10 C -0.13 -5.26 5.64 31.78 0.18 -5.08 16 11 C 0.24 11.59 0.89 -10.15 -0.01 11.58 16 12 O -0.60 -31.44 13.18 -148.98 -1.96 -33.40 16 13 C -0.56 -29.52 8.25 25.60 0.21 -29.31 16 14 H 0.05 2.91 7.77 -2.91 -0.02 2.89 16 15 C 0.04 1.95 5.30 84.65 0.45 2.40 16 16 N -0.91 -45.74 10.79 21.45 0.23 -45.51 16 17 Si 0.96 40.69 29.54 68.60 2.03 42.71 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 21 C 0.12 5.70 6.08 86.85 0.53 6.23 16 22 C -0.10 -3.04 4.52 -19.87 -0.09 -3.13 16 23 C -0.11 -2.54 6.71 22.27 0.15 -2.39 16 24 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 25 C -0.11 -2.45 10.05 22.27 0.22 -2.22 16 26 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 27 C -0.11 -3.32 9.35 22.27 0.21 -3.12 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.38 8.08 -2.38 -0.02 1.36 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 2.38 8.08 -2.39 -0.02 2.36 16 34 H 0.09 2.73 4.58 -2.38 -0.01 2.71 16 35 H 0.07 3.20 7.85 -2.39 -0.02 3.18 16 36 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 37 H 0.38 20.16 6.93 -74.06 -0.51 19.65 16 38 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 39 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.07 3.33 8.02 -2.39 -0.02 3.31 16 41 H 0.15 2.75 6.97 -2.91 -0.02 2.73 16 42 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 44 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.11 3.56 7.78 -2.91 -0.02 3.54 16 Total: -1.00 -66.87 366.85 1.84 -65.03 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: 0.48 Total: 41.11 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.65 Total: -2.86 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -2.47 Total: -72.31 kcal Atomic # 8 Polarization: -70.84 SS G_CDS: -2.85 Total: -73.68 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -66.87 1.84 -65.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.269 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds