Wall clock time and date at job start Tue Mar 31 2020 13:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46743 * 2 1 4 4 C 1.42906 * 113.99925 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46841 * 29.99960 * 4 3 2 6 6 C 1.50693 * 109.47121 * 270.00055 * 4 3 2 7 7 O 1.21283 * 120.00163 * 354.99430 * 6 4 3 8 8 N 1.34779 * 120.00132 * 174.99953 * 6 4 3 9 9 C 1.47023 * 125.64836 * 0.02685 * 8 6 4 10 10 C 1.54323 * 107.26999 * 181.02404 * 9 8 6 11 11 C 1.55150 * 102.94444 * 22.19018 * 10 9 8 12 12 O 1.42902 * 111.00661 * 82.57369 * 11 10 9 13 13 C 1.50703 * 111.00285 * 206.38731 * 11 10 9 14 14 H 1.07998 * 120.00124 * 24.82634 * 13 11 10 15 15 C 1.37875 * 120.00205 * 204.82219 * 13 11 10 16 16 N 1.31510 * 120.00215 * 173.52675 * 15 13 11 17 17 Si 1.86805 * 119.99847 * 353.53107 * 15 13 11 18 18 H 1.48499 * 109.47220 * 87.31535 * 17 15 13 19 19 H 1.48496 * 109.46901 * 207.31942 * 17 15 13 20 20 H 1.48506 * 109.47053 * 327.31828 * 17 15 13 21 21 C 1.47425 * 125.64904 * 179.71510 * 8 6 4 22 22 C 1.50693 * 109.47071 * 149.99769 * 4 3 2 23 23 C 1.38235 * 120.00086 * 219.99870 * 22 4 3 24 24 C 1.38235 * 120.00084 * 180.25546 * 23 22 4 25 25 C 1.38238 * 119.99906 * 359.51395 * 24 23 22 26 26 C 1.38228 * 120.00044 * 0.46669 * 25 24 23 27 27 C 1.38240 * 120.00099 * 359.76460 * 26 25 24 28 28 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46831 * 299.99882 * 1 2 3 30 30 H 1.09000 * 109.47080 * 60.00412 * 1 2 3 31 31 H 1.08997 * 109.47285 * 240.00001 * 2 1 3 32 32 H 1.08996 * 109.47547 * 119.99679 * 2 1 3 33 33 H 1.09007 * 109.87572 * 300.43732 * 9 8 6 34 34 H 1.08996 * 109.88309 * 61.60125 * 9 8 6 35 35 H 1.09000 * 110.71955 * 140.55733 * 10 9 8 36 36 H 1.09003 * 110.71573 * 263.64398 * 10 9 8 37 37 H 0.96697 * 114.00023 * 56.20647 * 12 11 10 38 38 H 0.96999 * 119.99863 * 180.02562 * 16 15 13 39 39 H 1.09006 * 110.36817 * 274.74550 * 21 8 6 40 40 H 1.09000 * 110.36702 * 37.06552 * 21 8 6 41 41 H 1.07999 * 119.99885 * 359.97438 * 23 22 4 42 42 H 1.08007 * 120.00427 * 179.72364 * 24 23 22 43 43 H 1.08000 * 120.00067 * 180.25467 * 25 24 23 44 44 H 1.07999 * 120.00091 * 179.78633 * 26 25 24 45 45 H 1.07999 * 120.00241 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9322 1.4997 1.4200 7 8 3.1435 1.5289 2.3408 8 7 5.2571 1.5026 1.6672 9 6 6.3186 1.4704 0.6504 10 6 7.6687 1.4611 1.3978 11 6 7.2862 0.9176 2.7997 12 8 7.2183 -0.5098 2.7947 13 6 8.2506 1.4059 3.8499 14 1 8.8029 2.3204 3.6923 15 6 8.4276 0.6851 5.0118 16 7 9.3587 1.0396 5.8701 17 14 7.3447 -0.7951 5.3668 18 1 7.9441 -2.0061 4.7506 19 1 7.2367 -0.9886 6.8351 20 1 5.9925 -0.5674 4.7967 21 6 5.8820 1.5452 3.0018 22 6 3.8341 2.7266 -0.7110 23 6 4.9320 2.7283 -1.5508 24 6 5.3051 3.8913 -2.1984 25 6 4.5741 5.0500 -2.0140 26 6 3.4759 5.0482 -1.1745 27 6 3.1057 3.8864 -0.5231 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8899 33 1 6.2240 0.5692 0.0444 34 1 6.2517 2.3546 0.0166 35 1 8.3772 0.7946 0.9058 36 1 8.0764 2.4694 1.4700 37 1 8.0311 -0.9412 2.4976 38 1 9.4835 0.5323 6.6874 39 1 5.9705 2.5754 3.3466 40 1 5.3018 0.9553 3.7113 41 1 5.5011 1.8222 -1.6975 42 1 6.1656 3.8938 -2.8511 43 1 4.8631 5.9576 -2.5231 44 1 2.9069 5.9543 -1.0277 45 1 2.2480 3.8851 0.1331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:10 Heat of formation + Delta-G solvation = -92.463604 kcal Electronic energy + Delta-G solvation = -28067.989251 eV Core-core repulsion = 24243.915435 eV Total energy + Delta-G solvation = -3824.073816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47082 -38.86799 -38.15088 -36.94499 -34.81089 -32.81020 -32.39383 -31.13733 -30.68703 -30.25059 -28.54075 -27.00157 -24.78557 -23.16723 -22.95168 -22.21793 -21.71013 -19.92278 -19.16430 -17.60564 -17.54058 -16.82507 -16.77144 -15.82881 -15.43638 -15.21604 -15.07121 -14.81197 -14.57162 -14.34883 -14.10223 -13.83022 -13.47694 -13.15606 -12.94692 -12.60865 -12.50889 -12.46366 -12.33128 -12.01300 -11.95716 -11.75771 -11.57032 -11.35106 -11.18551 -10.97793 -10.88091 -10.62128 -10.38635 -10.29529 -10.23152 -9.40629 -9.24690 -8.98520 -8.70638 -8.60770 -8.52766 -8.10078 -6.22852 -4.35757 1.16292 1.32216 2.86516 3.16566 3.44382 3.52643 3.55464 3.71892 3.87601 4.48361 4.57620 4.69335 4.74244 4.91043 4.94262 4.98556 5.02875 5.05633 5.09326 5.20360 5.22216 5.31087 5.39895 5.46817 5.50726 5.59548 5.70980 5.79992 5.85102 5.94902 5.97179 6.01711 6.08794 6.32226 6.42395 6.43157 6.48406 6.54285 6.60859 6.68725 6.86705 6.94979 7.02583 7.42992 7.95544 8.09089 8.49972 8.58545 8.78054 9.38985 10.85712 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.004585 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.119841 B = 6104.825622 C = 7413.483462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.122 3.878 5 H 0.089 0.911 6 C 0.505 3.495 7 O -0.533 6.533 8 N -0.604 5.604 9 C 0.091 3.909 10 C -0.148 4.148 11 C 0.220 3.780 12 O -0.559 6.559 13 C -0.553 4.553 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.885 5.885 17 Si 0.946 3.054 18 H -0.292 1.292 19 H -0.324 1.324 20 H -0.269 1.269 21 C 0.113 3.887 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.083 4.083 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.370 0.630 38 H 0.267 0.733 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 1.798 -18.646 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.060 3.940 5 H 0.106 0.894 6 C 0.292 3.708 7 O -0.410 6.410 8 N -0.339 5.339 9 C -0.032 4.032 10 C -0.187 4.187 11 C 0.179 3.821 12 O -0.366 6.366 13 C -0.590 4.590 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.520 5.520 17 Si 0.782 3.218 18 H -0.220 1.220 19 H -0.256 1.256 20 H -0.195 1.195 21 C -0.008 4.008 22 C -0.086 4.086 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.101 4.101 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.218 0.782 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.061 2.079 -17.793 21.054 hybrid contribution 0.394 -1.070 0.115 1.146 sum -10.668 1.008 -17.678 20.672 Atomic orbital electron populations 1.21696 0.93390 1.02180 1.03148 1.22590 0.95936 0.83434 1.00222 1.87959 1.17708 1.26857 1.94521 1.20639 0.83586 0.96980 0.92767 0.89353 1.20629 0.81472 0.77585 0.91163 1.90690 1.54383 1.50145 1.45771 1.48692 1.04303 1.71141 1.09729 1.22483 0.88590 1.00486 0.91629 1.23281 0.94327 1.02977 0.98068 1.20255 0.91804 0.77809 0.92183 1.86150 1.41719 1.21123 1.87639 1.21145 1.24231 1.11771 1.01874 0.89954 1.25136 0.94370 0.98174 0.95239 1.69955 1.30977 1.40384 1.10681 0.85720 0.81763 0.81158 0.73199 1.21964 1.25566 1.19505 1.23003 0.93767 1.01025 0.83020 1.19353 0.96997 0.93937 0.98296 1.21021 0.96114 0.99082 0.96021 1.21066 1.00110 0.92728 1.00202 1.21195 0.95454 0.98178 0.98340 1.21163 0.97543 0.98019 0.97449 1.21043 0.99071 0.91731 0.98258 0.91109 0.91540 0.91987 0.93398 0.92811 0.92375 0.91024 0.90704 0.90100 0.78182 0.92328 0.90242 0.90553 0.85545 0.85653 0.86016 0.85907 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.05 0.69 6.46 37.16 0.24 0.93 16 3 O -0.35 -5.33 8.85 -55.09 -0.49 -5.82 16 4 C 0.12 1.81 2.21 -29.04 -0.06 1.74 16 5 H 0.09 1.12 7.64 -51.93 -0.40 0.72 16 6 C 0.50 9.63 7.17 -10.99 -0.08 9.55 16 7 O -0.53 -12.19 16.76 -14.31 -0.24 -12.43 16 8 N -0.60 -11.45 3.32 -170.38 -0.57 -12.02 16 9 C 0.09 1.39 5.18 -3.06 -0.02 1.37 16 10 C -0.15 -2.54 6.11 -24.90 -0.15 -2.69 16 11 C 0.22 4.77 0.70 -89.51 -0.06 4.70 16 12 O -0.56 -11.91 8.53 -35.23 -0.30 -12.21 16 13 C -0.55 -14.43 8.89 -34.44 -0.31 -14.73 16 14 H 0.08 2.31 8.00 -52.49 -0.42 1.89 16 15 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 16 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 17 Si 0.95 23.82 24.92 -169.99 -4.24 19.59 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.32 -8.40 7.11 56.52 0.40 -8.00 16 20 H -0.27 -6.97 5.42 56.52 0.31 -6.67 16 21 C 0.11 2.52 5.90 -2.41 -0.01 2.50 16 22 C -0.09 -1.14 4.52 -104.63 -0.47 -1.62 16 23 C -0.10 -1.16 6.71 -39.58 -0.27 -1.43 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 27 C -0.08 -1.11 9.35 -39.58 -0.37 -1.48 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.77 7.98 -51.92 -0.41 0.35 16 34 H 0.07 0.97 4.81 -51.93 -0.25 0.72 16 35 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 36 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 37 H 0.37 6.68 8.99 45.56 0.41 7.09 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.08 1.79 8.04 -51.93 -0.42 1.38 16 40 H 0.08 1.90 6.50 -51.93 -0.34 1.57 16 41 H 0.13 1.18 6.92 -52.49 -0.36 0.82 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.13 1.81 7.78 -52.49 -0.41 1.41 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -33.65 360.95 -8.13 -41.78 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.04 Total: 6.16 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.47 Total: -5.18 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.21 Total: -37.32 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.03 Total: -30.46 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.24 Total: 19.59 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.65 -8.13 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.686 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds