Wall clock time and date at job start Tue Mar 31 2020 13:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46743 * 2 1 4 4 C 1.42906 * 113.99925 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46841 * 29.99960 * 4 3 2 6 6 C 1.50693 * 109.47121 * 270.00055 * 4 3 2 7 7 O 1.21283 * 120.00163 * 354.99430 * 6 4 3 8 8 N 1.34779 * 120.00132 * 174.99953 * 6 4 3 9 9 C 1.47023 * 125.64836 * 0.02685 * 8 6 4 10 10 C 1.54323 * 107.26999 * 181.02404 * 9 8 6 11 11 C 1.55150 * 102.94444 * 22.19018 * 10 9 8 12 12 O 1.42902 * 111.00661 * 82.57369 * 11 10 9 13 13 C 1.50703 * 111.00285 * 206.38731 * 11 10 9 14 14 H 1.07998 * 120.00124 * 24.82634 * 13 11 10 15 15 C 1.37875 * 120.00205 * 204.82219 * 13 11 10 16 16 N 1.31510 * 120.00215 * 173.52675 * 15 13 11 17 17 Si 1.86805 * 119.99847 * 353.53107 * 15 13 11 18 18 H 1.48499 * 109.47220 * 87.31535 * 17 15 13 19 19 H 1.48496 * 109.46901 * 207.31942 * 17 15 13 20 20 H 1.48506 * 109.47053 * 327.31828 * 17 15 13 21 21 C 1.47425 * 125.64904 * 179.71510 * 8 6 4 22 22 C 1.50693 * 109.47071 * 149.99769 * 4 3 2 23 23 C 1.38235 * 120.00086 * 219.99870 * 22 4 3 24 24 C 1.38235 * 120.00084 * 180.25546 * 23 22 4 25 25 C 1.38238 * 119.99906 * 359.51395 * 24 23 22 26 26 C 1.38228 * 120.00044 * 0.46669 * 25 24 23 27 27 C 1.38240 * 120.00099 * 359.76460 * 26 25 24 28 28 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46831 * 299.99882 * 1 2 3 30 30 H 1.09000 * 109.47080 * 60.00412 * 1 2 3 31 31 H 1.08997 * 109.47285 * 240.00001 * 2 1 3 32 32 H 1.08996 * 109.47547 * 119.99679 * 2 1 3 33 33 H 1.09007 * 109.87572 * 300.43732 * 9 8 6 34 34 H 1.08996 * 109.88309 * 61.60125 * 9 8 6 35 35 H 1.09000 * 110.71955 * 140.55733 * 10 9 8 36 36 H 1.09003 * 110.71573 * 263.64398 * 10 9 8 37 37 H 0.96697 * 114.00023 * 56.20647 * 12 11 10 38 38 H 0.96999 * 119.99863 * 180.02562 * 16 15 13 39 39 H 1.09006 * 110.36817 * 274.74550 * 21 8 6 40 40 H 1.09000 * 110.36702 * 37.06552 * 21 8 6 41 41 H 1.07999 * 119.99885 * 359.97438 * 23 22 4 42 42 H 1.08007 * 120.00427 * 179.72364 * 24 23 22 43 43 H 1.08000 * 120.00067 * 180.25467 * 25 24 23 44 44 H 1.07999 * 120.00091 * 179.78633 * 26 25 24 45 45 H 1.07999 * 120.00241 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9322 1.4997 1.4200 7 8 3.1435 1.5289 2.3408 8 7 5.2571 1.5026 1.6672 9 6 6.3186 1.4704 0.6504 10 6 7.6687 1.4611 1.3978 11 6 7.2862 0.9176 2.7997 12 8 7.2183 -0.5098 2.7947 13 6 8.2506 1.4059 3.8499 14 1 8.8029 2.3204 3.6923 15 6 8.4276 0.6851 5.0118 16 7 9.3587 1.0396 5.8701 17 14 7.3447 -0.7951 5.3668 18 1 7.9441 -2.0061 4.7506 19 1 7.2367 -0.9886 6.8351 20 1 5.9925 -0.5674 4.7967 21 6 5.8820 1.5452 3.0018 22 6 3.8341 2.7266 -0.7110 23 6 4.9320 2.7283 -1.5508 24 6 5.3051 3.8913 -2.1984 25 6 4.5741 5.0500 -2.0140 26 6 3.4759 5.0482 -1.1745 27 6 3.1057 3.8864 -0.5231 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8899 33 1 6.2240 0.5692 0.0444 34 1 6.2517 2.3546 0.0166 35 1 8.3772 0.7946 0.9058 36 1 8.0764 2.4694 1.4700 37 1 8.0311 -0.9412 2.4976 38 1 9.4835 0.5323 6.6874 39 1 5.9705 2.5754 3.3466 40 1 5.3018 0.9553 3.7113 41 1 5.5011 1.8222 -1.6975 42 1 6.1656 3.8938 -2.8511 43 1 4.8631 5.9576 -2.5231 44 1 2.9069 5.9543 -1.0277 45 1 2.2480 3.8851 0.1331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:09 Heat of formation + Delta-G solvation = -115.978123 kcal Electronic energy + Delta-G solvation = -28069.008917 eV Core-core repulsion = 24243.915435 eV Total energy + Delta-G solvation = -3825.093482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73722 -40.07913 -39.40159 -38.30811 -36.42436 -34.50071 -33.80130 -32.02558 -31.87916 -31.43079 -30.10963 -28.32653 -26.51487 -24.29819 -24.05826 -23.16512 -22.70096 -21.62132 -20.54037 -19.51157 -18.73985 -17.99302 -17.88403 -17.22010 -16.88309 -16.66365 -16.38610 -16.16070 -15.88039 -15.60264 -15.36345 -14.95413 -14.77337 -14.46202 -14.20999 -14.11319 -13.97934 -13.63333 -13.53123 -13.41956 -13.19588 -13.11674 -12.92603 -12.60306 -12.40141 -12.26875 -12.16987 -12.04705 -12.01085 -11.80461 -11.56915 -11.29300 -10.73159 -10.57344 -10.32247 -9.86961 -9.68830 -9.54524 -8.39643 -6.51560 0.30357 0.49332 1.39611 1.45103 1.47802 1.67536 1.82829 2.38494 2.55187 2.89458 2.93320 3.35060 3.55072 3.60282 3.76443 3.79897 4.07681 4.11366 4.15722 4.23888 4.25967 4.27430 4.33095 4.39650 4.45829 4.60188 4.63783 4.65735 4.77813 4.81723 4.91318 4.96907 4.99860 5.12958 5.14761 5.19212 5.22214 5.29125 5.50687 5.52969 5.55857 5.62159 5.98143 6.04487 6.08030 6.51005 6.57557 6.98033 7.03533 7.28797 8.73009 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.004585 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.119841 B = 6104.825622 C = 7413.483462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.370 6.370 4 C 0.132 3.868 5 H 0.118 0.882 6 C 0.497 3.503 7 O -0.586 6.586 8 N -0.605 5.605 9 C 0.092 3.908 10 C -0.137 4.137 11 C 0.218 3.782 12 O -0.563 6.563 13 C -0.544 4.544 14 H 0.056 0.944 15 C 0.033 3.967 16 N -0.930 5.930 17 Si 0.999 3.001 18 H -0.270 1.270 19 H -0.339 1.339 20 H -0.285 1.285 21 C 0.115 3.885 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.119 4.119 25 C -0.112 4.112 26 C -0.131 4.131 27 C -0.109 4.109 28 H 0.094 0.906 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.267 0.733 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.136 0.864 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.311 1.169 -22.871 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.288 6.288 4 C 0.071 3.929 5 H 0.135 0.865 6 C 0.286 3.714 7 O -0.466 6.466 8 N -0.338 5.338 9 C -0.029 4.029 10 C -0.175 4.175 11 C 0.177 3.823 12 O -0.373 6.373 13 C -0.582 4.582 14 H 0.074 0.926 15 C -0.168 4.168 16 N -0.567 5.567 17 Si 0.835 3.165 18 H -0.196 1.196 19 H -0.272 1.272 20 H -0.213 1.213 21 C -0.008 4.008 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.149 4.149 27 C -0.127 4.127 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.170 0.830 42 H 0.176 0.824 43 H 0.168 0.832 44 H 0.154 0.846 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.438 1.435 -22.076 24.461 hybrid contribution 0.182 -0.761 1.394 1.599 sum -10.256 0.673 -20.681 23.095 Atomic orbital electron populations 1.21714 0.91988 1.03612 1.02712 1.22821 0.97249 0.82491 1.00435 1.87970 1.18138 1.28438 1.94270 1.20648 0.83506 0.99079 0.89667 0.86469 1.21635 0.80907 0.76064 0.92817 1.90654 1.55704 1.52392 1.47889 1.48738 1.05220 1.70851 1.09038 1.22755 0.85944 1.03404 0.90793 1.23184 0.96202 1.03181 0.94968 1.20068 0.90180 0.78196 0.93863 1.86083 1.42886 1.20633 1.87739 1.21444 1.23759 1.10338 1.02661 0.92624 1.25733 0.95153 1.00423 0.95470 1.70050 1.33064 1.42064 1.11566 0.84855 0.79675 0.79898 0.72117 1.19650 1.27155 1.21252 1.22625 0.94135 0.99499 0.84548 1.19372 0.98438 0.92980 0.99678 1.21312 0.95191 1.00672 0.95219 1.21502 1.00583 0.91952 0.99625 1.21593 0.94438 0.99578 0.97384 1.21385 0.98350 0.97728 0.97441 1.21034 0.99248 0.93210 0.99252 0.88739 0.93434 0.90917 0.90420 0.95146 0.88880 0.88587 0.87455 0.90458 0.76279 0.92373 0.91849 0.94218 0.83028 0.82412 0.83237 0.84593 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 10.28 71.98 0.74 -2.09 16 2 C 0.05 1.11 6.46 71.98 0.46 1.58 16 3 O -0.37 -11.11 8.85 -129.99 -1.15 -12.26 16 4 C 0.13 3.73 2.21 29.10 0.06 3.80 16 5 H 0.12 2.56 7.64 -2.39 -0.02 2.54 16 6 C 0.50 18.98 7.17 87.65 0.63 19.61 16 7 O -0.59 -28.09 16.76 15.95 0.27 -27.82 16 8 N -0.60 -22.35 3.32 -811.34 -2.70 -25.05 16 9 C 0.09 2.45 5.18 86.73 0.45 2.90 16 10 C -0.14 -4.24 6.11 31.78 0.19 -4.05 16 11 C 0.22 9.21 0.70 -10.07 -0.01 9.21 16 12 O -0.56 -22.87 8.53 -148.98 -1.27 -24.14 16 13 C -0.54 -28.65 8.89 25.60 0.23 -28.42 16 14 H 0.06 3.19 8.00 -2.91 -0.02 3.16 16 15 C 0.03 1.86 5.46 84.65 0.46 2.32 16 16 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 17 Si 1.00 49.99 24.92 68.60 1.71 51.69 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.34 -17.61 7.11 99.48 0.71 -16.90 16 20 H -0.29 -14.97 5.42 99.48 0.54 -14.43 16 21 C 0.12 5.21 5.90 86.93 0.51 5.72 16 22 C -0.10 -2.58 4.52 -19.87 -0.09 -2.67 16 23 C -0.11 -1.90 6.71 22.27 0.15 -1.75 16 24 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 25 C -0.11 -1.81 10.05 22.27 0.22 -1.58 16 26 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 27 C -0.11 -2.87 9.35 22.27 0.21 -2.66 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.91 7.98 -2.38 -0.02 1.89 16 34 H 0.10 2.16 4.81 -2.39 -0.01 2.15 16 35 H 0.11 2.66 8.12 -2.39 -0.02 2.64 16 36 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 37 H 0.39 12.70 8.99 -74.06 -0.67 12.03 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.06 3.00 8.04 -2.38 -0.02 2.98 16 40 H 0.04 2.06 6.50 -2.39 -0.02 2.05 16 41 H 0.15 1.90 6.92 -2.91 -0.02 1.88 16 42 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 45 H 0.10 3.12 7.78 -2.91 -0.02 3.10 16 Total: -1.00 -78.00 360.95 2.00 -76.01 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.16 Total: 19.44 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.68 Total: -2.11 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.40 Total: -80.81 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -2.15 Total: -64.22 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.71 Total: 51.69 kcal Total: -78.00 2.00 -76.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.970 kcal (2) G-P(sol) polarization free energy of solvation -78.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds