Wall clock time and date at job start Tue Mar 31 2020 12:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47149 * 2 1 4 4 C 1.36932 * 119.99871 * 291.53297 * 3 2 1 5 5 H 1.07997 * 120.00401 * 151.00870 * 4 3 2 6 6 C 1.38814 * 120.00040 * 331.01477 * 4 3 2 7 7 N 1.31622 * 119.99901 * 335.01095 * 6 4 3 8 8 Si 1.86803 * 120.00186 * 155.01835 * 6 4 3 9 9 H 1.48500 * 109.47053 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47084 * 119.99608 * 8 6 4 11 11 H 1.48496 * 109.46886 * 239.99584 * 8 6 4 12 12 S 1.65602 * 119.99886 * 111.53202 * 3 2 1 13 13 O 1.42098 * 104.27931 * 333.92897 * 12 3 2 14 14 O 1.42100 * 104.27189 * 206.07287 * 12 3 2 15 15 C 1.81399 * 104.44822 * 90.00108 * 12 3 2 16 16 C 1.52996 * 109.46957 * 187.91123 * 15 12 3 17 17 H 1.09000 * 109.47098 * 60.33471 * 16 15 12 18 18 O 1.42903 * 109.47247 * 180.32815 * 16 15 12 19 19 C 1.42898 * 114.00104 * 271.20054 * 18 16 15 20 20 C 1.53000 * 109.47588 * 300.32678 * 16 15 12 21 21 C 1.53001 * 109.47304 * 179.97438 * 20 16 15 22 22 C 1.52999 * 109.46670 * 180.02562 * 21 20 16 23 23 C 1.52995 * 109.47602 * 300.00049 * 22 21 20 24 24 C 1.53001 * 109.47148 * 60.00243 * 23 22 21 25 25 C 1.52997 * 109.47057 * 300.00307 * 20 16 15 26 26 H 1.09001 * 109.47157 * 300.00099 * 1 2 3 27 27 H 1.09001 * 109.47344 * 60.00331 * 1 2 3 28 28 H 1.09001 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47157 * 239.99901 * 2 1 3 30 30 H 1.09001 * 109.47344 * 119.99669 * 2 1 3 31 31 H 0.97001 * 120.00289 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46982 * 67.91232 * 15 12 3 33 33 H 1.08995 * 109.47232 * 307.91225 * 15 12 3 34 34 H 1.09002 * 109.47429 * 184.77532 * 19 18 16 35 35 H 1.09004 * 109.46840 * 304.76922 * 19 18 16 36 36 H 1.08996 * 109.47605 * 64.76686 * 19 18 16 37 37 H 1.09010 * 109.46688 * 59.99867 * 20 16 15 38 38 H 1.08998 * 109.46963 * 60.00717 * 21 20 16 39 39 H 1.08997 * 109.46969 * 300.00160 * 21 20 16 40 40 H 1.09000 * 109.47390 * 60.00877 * 22 21 20 41 41 H 1.09002 * 109.46558 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47328 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46879 * 300.00273 * 23 22 21 44 44 H 1.08998 * 109.47393 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.46963 * 59.99747 * 24 23 22 46 46 H 1.08998 * 109.47433 * 299.99420 * 25 20 16 47 47 H 1.09006 * 109.47334 * 59.99993 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8361 2.1718 -1.1031 5 1 1.7444 3.2421 -0.9913 6 6 1.7692 1.5976 -2.3652 7 7 2.3445 0.4355 -2.5908 8 14 0.8627 2.4743 -3.7433 9 1 0.3077 3.7544 -3.2349 10 1 1.8044 2.7505 -4.8580 11 1 -0.2448 1.6146 -4.2325 12 16 2.7906 1.9864 1.3341 13 8 2.2801 1.2165 2.4139 14 8 2.5662 3.3878 1.2631 15 6 4.5422 1.6072 1.0540 16 6 5.3442 1.9424 2.3130 17 1 4.9771 1.3450 3.1475 18 8 6.7253 1.6509 2.0898 19 6 7.0961 0.3097 2.4148 20 6 5.1832 3.4284 2.6398 21 6 5.9847 3.7635 3.8992 22 6 5.8230 5.2494 4.2262 23 6 6.3386 6.0884 3.0553 24 6 5.5370 5.7533 1.7959 25 6 5.6985 4.2670 1.4684 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2975 0.0340 -3.4726 32 1 4.9132 2.2004 0.2181 33 1 4.6523 0.5474 0.8245 34 1 8.1735 0.1922 2.2986 35 1 6.8164 0.0953 3.4463 36 1 6.5812 -0.3816 1.7477 37 1 4.1297 3.6509 2.8101 38 1 7.0381 3.5411 3.7293 39 1 5.6171 3.1661 4.7335 40 1 4.7696 5.4715 4.3964 41 1 6.3937 5.4879 5.1237 42 1 6.2238 7.1470 3.2886 43 1 7.3921 5.8663 2.8853 44 1 5.9046 6.3508 0.9616 45 1 4.4835 5.9754 1.9660 46 1 6.7519 4.0446 1.2981 47 1 5.1271 4.0282 0.5714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594723061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:47 Heat of formation + Delta-G solvation = -138.622924 kcal Electronic energy + Delta-G solvation = -27588.765126 eV Core-core repulsion = 23898.133643 eV Total energy + Delta-G solvation = -3690.631483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.17269 -36.89464 -36.15507 -35.68567 -34.51560 -32.48869 -31.87118 -30.50762 -29.29935 -28.56994 -26.47733 -24.95670 -23.52198 -22.19390 -21.60022 -20.55247 -19.47476 -18.38755 -17.01896 -16.65847 -16.04205 -15.80365 -15.42458 -14.82061 -14.54846 -14.47460 -14.22020 -13.90514 -13.75145 -13.57109 -13.24405 -12.85216 -12.81790 -12.33640 -12.26992 -12.04391 -11.84702 -11.56285 -11.46789 -11.33477 -11.01561 -10.99169 -10.96455 -10.83145 -10.72883 -10.68108 -10.56276 -10.47564 -10.22031 -10.14552 -9.92138 -9.79156 -9.67141 -9.56904 -9.40856 -9.17411 -7.91264 -6.58957 -4.09793 1.60567 3.05998 3.14556 3.22144 3.88958 4.06033 4.27471 4.65040 4.81252 4.89611 4.98132 5.13951 5.27409 5.38390 5.40646 5.47162 5.52221 5.61165 5.65720 5.67030 5.79934 5.81506 5.82935 5.90339 5.92597 6.07160 6.08689 6.22334 6.25722 6.33354 6.38918 6.41626 6.42541 6.46755 6.51967 6.56123 6.68115 6.82932 6.83730 6.93145 7.17445 7.29368 7.43236 7.51993 8.26994 8.65366 9.12663 10.31109 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.004965 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.208258 B = 5637.739394 C = 6178.350217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.107 3.893 3 N -0.801 5.801 4 C -0.238 4.238 5 H 0.114 0.886 6 C 0.036 3.964 7 N -0.824 5.824 8 Si 0.920 3.080 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.275 1.275 12 S 2.473 3.527 13 O -1.006 7.006 14 O -0.976 6.976 15 C -0.683 4.683 16 C 0.116 3.884 17 H 0.061 0.939 18 O -0.375 6.375 19 C 0.029 3.971 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.055 0.945 31 H 0.275 0.725 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.061 1.850 5.431 8.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 N -0.625 5.625 4 C -0.386 4.386 5 H 0.132 0.868 6 C -0.178 4.178 7 N -0.462 5.462 8 Si 0.745 3.255 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.201 1.201 12 S 2.573 3.427 13 O -0.996 6.996 14 O -0.966 6.966 15 C -0.802 4.802 16 C 0.058 3.942 17 H 0.079 0.921 18 O -0.293 6.293 19 C -0.068 4.068 20 C -0.122 4.122 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.143 4.143 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.026 2.263 6.259 8.978 hybrid contribution 0.192 -0.445 -1.024 1.133 sum 6.218 1.818 5.234 8.329 Atomic orbital electron populations 1.21890 0.97058 0.99813 1.01765 1.21447 0.93969 0.83514 1.02982 1.53875 1.55819 1.20424 1.32348 1.19925 1.41212 0.93284 0.84215 0.86831 1.25729 0.96687 0.96635 0.98755 1.69935 1.35941 1.17110 1.23239 0.85954 0.79464 0.80168 0.79939 1.18404 1.20340 1.20093 1.13769 0.76546 0.75355 0.77012 1.93335 1.77865 1.71844 1.56567 1.93360 1.84144 1.32172 1.86919 1.31747 1.32699 1.09955 1.05795 1.21800 0.82024 0.95827 0.94572 0.92066 1.87886 1.25600 1.28494 1.87359 1.22748 1.00542 0.84657 0.98860 1.21598 1.01161 0.92820 0.96603 1.21505 1.00912 0.95928 0.96411 1.21538 1.01355 0.95163 0.97671 1.21532 0.99698 0.98807 0.95455 1.21555 1.00858 0.96509 0.96914 1.21470 1.01363 0.93793 0.97636 0.93657 0.92223 0.93546 0.87759 0.92632 0.91481 0.85761 0.87450 0.90110 0.94355 0.94057 0.89532 0.91122 0.92500 0.91918 0.92367 0.92531 0.92304 0.92261 0.91311 0.91629 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.99 37.15 0.37 -2.56 16 2 C 0.11 2.37 5.75 -4.04 -0.02 2.35 16 3 N -0.80 -19.01 2.90 -59.91 -0.17 -19.19 16 4 C -0.24 -5.80 8.70 -15.06 -0.13 -5.93 16 5 H 0.11 2.81 7.25 -52.49 -0.38 2.43 16 6 C 0.04 0.82 4.68 -17.43 -0.08 0.74 16 7 N -0.82 -19.38 11.09 55.49 0.62 -18.76 16 8 Si 0.92 18.25 29.62 -169.99 -5.04 13.22 16 9 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 10 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 12 S 2.47 57.06 4.58 -107.50 -0.49 56.56 16 13 O -1.01 -24.92 16.68 -57.54 -0.96 -25.88 16 14 O -0.98 -24.09 15.07 -57.54 -0.87 -24.95 16 15 C -0.68 -13.83 5.63 37.16 0.21 -13.62 16 16 C 0.12 2.13 1.98 -26.73 -0.05 2.07 16 17 H 0.06 1.10 7.73 -51.93 -0.40 0.70 16 18 O -0.37 -6.38 9.00 -35.23 -0.32 -6.69 16 19 C 0.03 0.40 10.87 101.05 1.10 1.49 16 20 C -0.10 -1.82 1.64 -90.62 -0.15 -1.97 16 21 C -0.11 -1.62 5.06 -26.73 -0.14 -1.75 16 22 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 23 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 24 C -0.12 -1.82 5.92 -26.70 -0.16 -1.98 16 25 C -0.11 -1.81 4.71 -26.70 -0.13 -1.93 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.22 7.54 -51.93 -0.39 0.83 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 2.38 5.47 -51.93 -0.28 2.10 16 30 H 0.06 1.18 7.07 -51.93 -0.37 0.81 16 31 H 0.27 6.02 8.31 -40.82 -0.34 5.68 16 32 H 0.12 2.57 6.45 -51.92 -0.33 2.23 16 33 H 0.11 2.12 7.88 -51.93 -0.41 1.71 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.48 7.98 -51.93 -0.41 0.06 16 36 H 0.04 0.58 7.88 -51.93 -0.41 0.17 16 37 H 0.09 1.69 5.83 -51.92 -0.30 1.39 16 38 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 47 H 0.07 1.37 6.44 -51.93 -0.33 1.04 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -27.70 369.66 -9.34 -37.04 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.19 Total: 9.56 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 0.51 Total: -26.47 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.44 Total: -37.95 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -2.14 Total: -57.53 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.04 Total: 13.22 kcal Atomic # 16 Polarization: 57.06 SS G_CDS: -0.49 Total: 56.56 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.70 -9.34 -37.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594723061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.581 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds