Wall clock time and date at job start Tue Mar 31 2020 12:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47149 * 2 1 4 4 C 1.36932 * 119.99871 * 291.53297 * 3 2 1 5 5 H 1.07997 * 120.00401 * 151.00870 * 4 3 2 6 6 C 1.38814 * 120.00040 * 331.01477 * 4 3 2 7 7 N 1.31622 * 119.99901 * 335.01095 * 6 4 3 8 8 Si 1.86803 * 120.00186 * 155.01835 * 6 4 3 9 9 H 1.48500 * 109.47053 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47084 * 119.99608 * 8 6 4 11 11 H 1.48496 * 109.46886 * 239.99584 * 8 6 4 12 12 S 1.65602 * 119.99886 * 111.53202 * 3 2 1 13 13 O 1.42098 * 104.27931 * 333.92897 * 12 3 2 14 14 O 1.42100 * 104.27189 * 206.07287 * 12 3 2 15 15 C 1.81399 * 104.44822 * 90.00108 * 12 3 2 16 16 C 1.52996 * 109.46957 * 187.91123 * 15 12 3 17 17 H 1.09000 * 109.47098 * 60.33471 * 16 15 12 18 18 O 1.42903 * 109.47247 * 180.32815 * 16 15 12 19 19 C 1.42898 * 114.00104 * 271.20054 * 18 16 15 20 20 C 1.53000 * 109.47588 * 300.32678 * 16 15 12 21 21 C 1.53001 * 109.47304 * 179.97438 * 20 16 15 22 22 C 1.52999 * 109.46670 * 180.02562 * 21 20 16 23 23 C 1.52995 * 109.47602 * 300.00049 * 22 21 20 24 24 C 1.53001 * 109.47148 * 60.00243 * 23 22 21 25 25 C 1.52997 * 109.47057 * 300.00307 * 20 16 15 26 26 H 1.09001 * 109.47157 * 300.00099 * 1 2 3 27 27 H 1.09001 * 109.47344 * 60.00331 * 1 2 3 28 28 H 1.09001 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47157 * 239.99901 * 2 1 3 30 30 H 1.09001 * 109.47344 * 119.99669 * 2 1 3 31 31 H 0.97001 * 120.00289 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46982 * 67.91232 * 15 12 3 33 33 H 1.08995 * 109.47232 * 307.91225 * 15 12 3 34 34 H 1.09002 * 109.47429 * 184.77532 * 19 18 16 35 35 H 1.09004 * 109.46840 * 304.76922 * 19 18 16 36 36 H 1.08996 * 109.47605 * 64.76686 * 19 18 16 37 37 H 1.09010 * 109.46688 * 59.99867 * 20 16 15 38 38 H 1.08998 * 109.46963 * 60.00717 * 21 20 16 39 39 H 1.08997 * 109.46969 * 300.00160 * 21 20 16 40 40 H 1.09000 * 109.47390 * 60.00877 * 22 21 20 41 41 H 1.09002 * 109.46558 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47328 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46879 * 300.00273 * 23 22 21 44 44 H 1.08998 * 109.47393 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.46963 * 59.99747 * 24 23 22 46 46 H 1.08998 * 109.47433 * 299.99420 * 25 20 16 47 47 H 1.09006 * 109.47334 * 59.99993 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8361 2.1718 -1.1031 5 1 1.7444 3.2421 -0.9913 6 6 1.7692 1.5976 -2.3652 7 7 2.3445 0.4355 -2.5908 8 14 0.8627 2.4743 -3.7433 9 1 0.3077 3.7544 -3.2349 10 1 1.8044 2.7505 -4.8580 11 1 -0.2448 1.6146 -4.2325 12 16 2.7906 1.9864 1.3341 13 8 2.2801 1.2165 2.4139 14 8 2.5662 3.3878 1.2631 15 6 4.5422 1.6072 1.0540 16 6 5.3442 1.9424 2.3130 17 1 4.9771 1.3450 3.1475 18 8 6.7253 1.6509 2.0898 19 6 7.0961 0.3097 2.4148 20 6 5.1832 3.4284 2.6398 21 6 5.9847 3.7635 3.8992 22 6 5.8230 5.2494 4.2262 23 6 6.3386 6.0884 3.0553 24 6 5.5370 5.7533 1.7959 25 6 5.6985 4.2670 1.4684 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2975 0.0340 -3.4726 32 1 4.9132 2.2004 0.2181 33 1 4.6523 0.5474 0.8245 34 1 8.1735 0.1922 2.2986 35 1 6.8164 0.0953 3.4463 36 1 6.5812 -0.3816 1.7477 37 1 4.1297 3.6509 2.8101 38 1 7.0381 3.5411 3.7293 39 1 5.6171 3.1661 4.7335 40 1 4.7696 5.4715 4.3964 41 1 6.3937 5.4879 5.1237 42 1 6.2238 7.1470 3.2886 43 1 7.3921 5.8663 2.8853 44 1 5.9046 6.3508 0.9616 45 1 4.4835 5.9754 1.9660 46 1 6.7519 4.0446 1.2981 47 1 5.1271 4.0282 0.5714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594723061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:45 Heat of formation + Delta-G solvation = -154.640215 kcal Electronic energy + Delta-G solvation = -27589.459688 eV Core-core repulsion = 23898.133643 eV Total energy + Delta-G solvation = -3691.326045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.49010 -38.14980 -37.93552 -37.62170 -36.46606 -33.84189 -33.64595 -31.70267 -31.02699 -30.00084 -27.64284 -26.75561 -24.88949 -23.42136 -23.31968 -21.86236 -20.73916 -20.21197 -18.83131 -18.41200 -17.58204 -17.23683 -16.96328 -16.53453 -16.21308 -15.78570 -15.68466 -15.34628 -15.07452 -14.90665 -14.67220 -14.37197 -14.21473 -14.06982 -13.76619 -13.62161 -13.13402 -13.02131 -12.80683 -12.76098 -12.74291 -12.67241 -12.61894 -12.59531 -12.14039 -12.07256 -12.01219 -11.97417 -11.93660 -11.61528 -11.46084 -11.26215 -11.17228 -11.03729 -10.89721 -10.58402 -9.70690 -8.35949 -5.96188 -0.22627 1.46952 1.52025 1.64218 2.17281 2.49775 2.76673 2.85697 3.29370 3.44202 3.61132 3.68012 3.80901 3.93319 4.05265 4.24058 4.32480 4.36568 4.39895 4.42850 4.46069 4.57237 4.59254 4.64047 4.67503 4.68769 4.72094 4.76161 4.77885 4.93566 4.97800 4.99806 5.15179 5.21979 5.24253 5.28693 5.30437 5.36130 5.38109 5.45503 5.58328 5.59571 5.75716 6.11803 6.44207 6.83384 7.30614 8.55748 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.004965 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.208258 B = 5637.739394 C = 6178.350217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.101 3.899 3 N -0.815 5.815 4 C -0.270 4.270 5 H 0.098 0.902 6 C 0.012 3.988 7 N -0.843 5.843 8 Si 0.975 3.025 9 H -0.265 1.265 10 H -0.272 1.272 11 H -0.266 1.266 12 S 2.486 3.514 13 O -1.024 7.024 14 O -0.997 6.997 15 C -0.670 4.670 16 C 0.118 3.882 17 H 0.064 0.936 18 O -0.381 6.381 19 C 0.017 3.983 20 C -0.109 4.109 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.105 4.105 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.282 0.718 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 1.923 5.899 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 N -0.639 5.639 4 C -0.416 4.416 5 H 0.116 0.884 6 C -0.200 4.200 7 N -0.482 5.482 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.198 1.198 11 H -0.191 1.191 12 S 2.589 3.411 13 O -1.014 7.014 14 O -0.987 6.987 15 C -0.792 4.792 16 C 0.059 3.941 17 H 0.082 0.918 18 O -0.299 6.299 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.142 4.142 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.284 2.324 6.708 10.171 hybrid contribution -0.104 -0.535 -1.107 1.234 sum 7.180 1.789 5.602 9.281 Atomic orbital electron populations 1.21864 0.95677 1.01617 1.00979 1.21562 0.95285 0.82829 1.02801 1.53775 1.57095 1.20973 1.32075 1.19861 1.43817 0.92882 0.85089 0.88403 1.26298 0.96605 0.97170 0.99936 1.69964 1.36269 1.17861 1.24064 0.85149 0.78590 0.79084 0.77456 1.18887 1.19777 1.19121 1.12748 0.77338 0.74603 0.76392 1.93306 1.78839 1.72094 1.57204 1.93336 1.84980 1.33253 1.87123 1.31496 1.30569 1.10100 1.07061 1.21742 0.82744 0.96512 0.93140 0.91757 1.87870 1.24120 1.30379 1.87537 1.23043 1.02280 0.82903 0.99645 1.21628 1.00249 0.92470 0.98449 1.21511 1.00685 0.97343 0.94881 1.21577 1.01330 0.93953 0.98932 1.21520 0.99704 0.99950 0.93828 1.21572 1.00289 0.95187 0.98941 1.21442 1.01059 0.95332 0.96368 0.94344 0.93022 0.90442 0.88351 0.92235 0.90816 0.86364 0.86951 0.87299 0.92846 0.94611 0.92133 0.90252 0.91816 0.92927 0.89591 0.90573 0.91108 0.91097 0.93313 0.90923 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 9.99 71.98 0.72 -4.97 16 2 C 0.10 4.52 5.75 86.38 0.50 5.02 16 3 N -0.81 -39.65 2.90 -343.45 -1.00 -40.65 16 4 C -0.27 -13.51 8.70 84.03 0.73 -12.78 16 5 H 0.10 5.09 7.25 -2.91 -0.02 5.06 16 6 C 0.01 0.54 4.68 84.86 0.40 0.94 16 7 N -0.84 -39.75 11.09 21.65 0.24 -39.51 16 8 Si 0.97 37.36 29.62 68.60 2.03 39.39 16 9 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 10 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 11 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 12 S 2.49 117.92 4.58 -56.49 -0.26 117.66 16 13 O -1.02 -51.54 16.68 -127.65 -2.13 -53.67 16 14 O -1.00 -51.24 15.07 -127.65 -1.92 -53.16 16 15 C -0.67 -27.50 5.63 71.98 0.41 -27.10 16 16 C 0.12 4.26 1.98 30.59 0.06 4.32 16 17 H 0.06 2.27 7.73 -2.39 -0.02 2.25 16 18 O -0.38 -12.36 9.00 -148.98 -1.34 -13.70 16 19 C 0.02 0.44 10.87 113.37 1.23 1.67 16 20 C -0.11 -3.84 1.64 -10.79 -0.02 -3.86 16 21 C -0.11 -2.95 5.06 30.59 0.15 -2.80 16 22 C -0.12 -2.88 5.92 30.59 0.18 -2.70 16 23 C -0.11 -2.63 5.92 30.59 0.18 -2.44 16 24 C -0.12 -3.63 5.92 30.61 0.18 -3.45 16 25 C -0.10 -3.60 4.71 30.61 0.14 -3.46 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 2.12 7.54 -2.39 -0.02 2.10 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.10 4.53 5.47 -2.39 -0.01 4.52 16 30 H 0.06 2.54 7.07 -2.39 -0.02 2.52 16 31 H 0.28 12.23 8.31 -92.71 -0.77 11.46 16 32 H 0.12 5.04 6.45 -2.39 -0.02 5.03 16 33 H 0.11 4.46 7.88 -2.39 -0.02 4.44 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.20 7.98 -2.39 -0.02 1.18 16 36 H 0.04 0.94 7.88 -2.39 -0.02 0.92 16 37 H 0.06 2.44 5.83 -2.38 -0.01 2.42 16 38 H 0.08 2.06 7.68 -2.39 -0.02 2.04 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 2.35 7.68 -2.39 -0.02 2.34 16 47 H 0.04 1.70 6.44 -2.38 -0.02 1.69 16 Total: -1.00 -59.59 369.66 1.42 -58.17 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.93 Total: 37.09 kcal Atomic # 6 Polarization: -56.48 SS G_CDS: 4.87 Total: -51.61 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -0.76 Total: -80.16 kcal Atomic # 8 Polarization: -115.14 SS G_CDS: -5.39 Total: -120.53 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: 117.92 SS G_CDS: -0.26 Total: 117.66 kcal Total: -59.59 1.42 -58.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594723061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.472 kcal (2) G-P(sol) polarization free energy of solvation -59.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds