Wall clock time and date at job start Tue Mar 31 2020 12:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47079 * 2 1 4 4 C 1.46498 * 119.99977 * 275.27251 * 3 2 1 5 5 C 1.50699 * 109.47020 * 274.72742 * 4 3 2 6 6 H 1.07994 * 120.00363 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99818 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99767 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00047 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46700 * 90.00481 * 9 7 5 11 11 H 1.48502 * 109.47242 * 210.00433 * 9 7 5 12 12 H 1.48492 * 109.47204 * 330.00630 * 9 7 5 13 13 S 1.65606 * 120.00090 * 94.99748 * 3 2 1 14 14 O 1.42107 * 104.27363 * 206.07350 * 13 3 2 15 15 O 1.42101 * 104.27674 * 333.92726 * 13 3 2 16 16 C 1.81400 * 104.44999 * 90.00092 * 13 3 2 17 17 C 1.52994 * 109.47142 * 180.02562 * 16 13 3 18 18 H 1.09000 * 109.47455 * 59.99774 * 17 16 13 19 19 O 1.42907 * 109.47071 * 300.00076 * 17 16 13 20 20 C 1.42894 * 113.99773 * 298.22611 * 19 17 16 21 21 C 1.52997 * 109.47072 * 179.97438 * 17 16 13 22 22 C 1.54269 * 110.03221 * 292.32804 * 21 17 16 23 23 C 1.54969 * 104.15992 * 217.13852 * 22 21 17 24 24 C 1.54893 * 102.77809 * 37.88757 * 23 22 21 25 25 C 1.53878 * 110.02890 * 175.11397 * 21 17 16 26 26 H 1.09000 * 109.46934 * 60.00605 * 1 2 3 27 27 H 1.09004 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47458 * 300.00265 * 1 2 3 29 29 H 1.08994 * 109.47458 * 239.99735 * 2 1 3 30 30 H 1.09008 * 109.46659 * 119.99538 * 2 1 3 31 31 H 1.09002 * 109.46920 * 34.72809 * 4 3 2 32 32 H 1.09001 * 109.47441 * 154.72366 * 4 3 2 33 33 H 0.97001 * 119.99724 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46732 * 300.00135 * 16 13 3 35 35 H 1.08996 * 109.46668 * 59.99734 * 16 13 3 36 36 H 1.09001 * 109.47134 * 301.60868 * 20 19 17 37 37 H 1.08998 * 109.47442 * 61.61016 * 20 19 17 38 38 H 1.08999 * 109.47323 * 181.61299 * 20 19 17 39 39 H 1.09000 * 110.01647 * 53.72323 * 21 17 16 40 40 H 1.08996 * 110.48223 * 335.78438 * 22 21 17 41 41 H 1.08997 * 110.48359 * 98.42902 * 22 21 17 42 42 H 1.08997 * 110.71881 * 279.57550 * 23 22 21 43 43 H 1.08994 * 110.92087 * 156.29922 * 23 22 21 44 44 H 1.08996 * 110.48613 * 203.40798 * 24 23 22 45 45 H 1.09000 * 110.59852 * 80.81608 * 24 23 22 46 46 H 1.09003 * 110.03260 * 238.56650 * 25 21 17 47 47 H 1.08998 * 110.03338 * 359.94815 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1526 2.1107 -1.2633 5 6 3.4891 1.7970 -1.8849 6 1 4.1705 1.1221 -1.3884 7 6 3.8423 2.3724 -3.0871 8 7 5.0085 2.0983 -3.6298 9 14 2.6640 3.5403 -3.9456 10 1 2.9230 4.9293 -3.4886 11 1 2.8663 3.4566 -5.4144 12 1 1.2659 3.1635 -3.6163 13 16 2.4121 2.1203 1.4287 14 8 2.2332 3.5056 1.1675 15 8 1.6207 1.4497 2.3999 16 6 4.1697 1.7390 1.6662 17 6 4.6577 2.3741 2.9697 18 1 4.0832 1.9752 3.8057 19 8 4.4822 3.7909 2.9042 20 6 5.2288 4.4213 1.8616 21 6 6.1398 2.0520 3.1703 22 6 6.3216 0.5431 3.4349 23 6 7.4610 0.4766 4.4832 24 6 7.1632 1.6960 5.3907 25 6 6.6749 2.7849 4.4131 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3558 1.8092 -1.9434 32 1 2.0824 3.1818 -1.0737 33 1 5.2571 2.5034 -4.4753 34 1 4.3034 0.6584 1.7166 35 1 4.7440 2.1376 0.8300 36 1 6.2899 4.2117 1.9967 37 1 4.9022 4.0351 0.8961 38 1 5.0639 5.4982 1.8967 39 1 6.7086 2.3477 2.2887 40 1 5.4052 0.1138 3.8400 41 1 6.6135 0.0278 2.5199 42 1 8.4337 0.5812 4.0027 43 1 7.4113 -0.4508 5.0537 44 1 8.0691 2.0211 5.9023 45 1 6.3836 1.4549 6.1134 46 1 7.5040 3.4356 4.1347 47 1 5.8789 3.3707 4.8727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594759700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:51 Heat of formation + Delta-G solvation = -132.740033 kcal Electronic energy + Delta-G solvation = -27301.351807 eV Core-core repulsion = 23610.975425 eV Total energy + Delta-G solvation = -3690.376382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.57065 -36.86537 -36.51790 -36.19488 -35.26525 -32.69776 -31.81356 -30.23681 -28.79915 -27.96952 -27.18533 -26.85414 -22.93925 -22.51931 -21.45541 -20.75293 -19.58966 -18.13173 -17.04100 -17.01671 -16.84907 -16.23982 -15.77283 -15.58314 -15.27025 -14.86566 -14.36622 -14.08281 -13.95916 -13.49689 -13.38281 -13.20831 -12.75464 -12.51037 -12.43420 -12.02509 -11.93206 -11.78806 -11.67442 -11.48100 -11.40822 -11.31864 -11.17558 -11.12626 -11.09890 -11.00688 -10.90241 -10.66381 -10.55097 -10.47438 -10.36356 -10.15753 -10.05032 -9.64603 -9.45910 -8.70643 -8.07664 -6.22646 -4.23828 0.87317 3.22379 3.28178 3.33757 3.35297 3.87475 4.30229 4.30843 4.46761 4.56191 4.61128 4.72177 4.82624 5.07813 5.12004 5.21959 5.33474 5.37013 5.44273 5.47999 5.52742 5.61703 5.63101 5.68862 5.73231 5.74431 5.76963 5.82318 5.89187 6.00992 6.03242 6.04104 6.17952 6.20559 6.22831 6.24367 6.35633 6.51877 6.62858 6.87051 7.11251 7.19496 7.37220 7.50859 8.33839 8.77970 9.38657 10.89480 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.004998 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.097251 B = 5601.145876 C = 6378.086323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.982 5.982 4 C 0.212 3.788 5 C -0.547 4.547 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.869 3.131 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.262 1.262 13 S 2.618 3.382 14 O -0.946 6.946 15 O -0.975 6.975 16 C -0.672 4.672 17 C 0.109 3.891 18 H 0.110 0.890 19 O -0.377 6.377 20 C 0.021 3.979 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.266 0.734 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -2.632 13.360 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.820 5.820 4 C 0.089 3.911 5 C -0.586 4.586 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.696 3.304 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.187 1.187 13 S 2.710 3.290 14 O -0.936 6.936 15 O -0.966 6.966 16 C -0.799 4.799 17 C 0.050 3.950 18 H 0.128 0.872 19 O -0.295 6.295 20 C -0.075 4.075 21 C -0.134 4.134 22 C -0.158 4.158 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.157 4.157 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.703 -1.987 13.829 14.074 hybrid contribution 0.451 0.043 -1.290 1.368 sum 2.154 -1.944 12.538 12.870 Atomic orbital electron populations 1.22206 0.96801 1.01488 1.02436 1.21035 0.93856 0.82591 1.02387 1.57270 1.78623 1.23039 1.23067 1.19594 0.98012 0.92494 0.81023 1.21477 1.01037 1.29385 1.06702 0.90340 1.24848 0.94986 0.95990 0.96795 1.69889 1.20652 1.43720 1.18880 0.86939 0.82277 0.82165 0.79047 1.19613 1.21017 1.18691 1.04666 0.76815 0.74400 0.73137 1.93544 1.84829 1.31456 1.83803 1.93517 1.65651 1.76412 1.61000 1.31413 1.29417 1.11454 1.07657 1.21989 0.96764 0.81816 0.94441 0.87189 1.88012 1.69190 1.18404 1.53914 1.22906 0.94902 0.98533 0.91170 1.22327 0.95490 0.96244 0.99389 1.22426 0.98964 0.95097 0.99355 1.22501 0.98622 0.98064 0.97016 1.22379 1.00689 0.95506 0.97717 1.22163 1.00798 0.97706 0.95003 0.92352 0.92218 0.92288 0.89980 0.91619 0.94464 0.93576 0.92427 0.84673 0.83254 0.93743 0.92347 0.89330 0.89927 0.91208 0.91090 0.91564 0.91642 0.91918 0.91640 0.91866 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.23 37.16 0.38 -2.24 16 2 C 0.13 2.15 5.98 -4.04 -0.02 2.13 16 3 N -0.98 -19.51 2.70 -115.66 -0.31 -19.82 16 4 C 0.21 4.87 4.48 -5.20 -0.02 4.85 16 5 C -0.55 -14.09 9.94 -34.44 -0.34 -14.43 16 6 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.53 13.96 55.43 0.77 -24.75 16 9 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 13 S 2.62 50.29 5.17 -107.50 -0.56 49.73 16 14 O -0.95 -20.97 15.80 -61.88 -0.98 -21.94 16 15 O -0.98 -19.36 16.75 -57.54 -0.96 -20.33 16 16 C -0.67 -10.68 5.21 37.15 0.19 -10.48 16 17 C 0.11 1.58 2.07 -26.74 -0.06 1.52 16 18 H 0.11 1.47 8.01 -51.93 -0.42 1.06 16 19 O -0.38 -6.07 8.92 -41.95 -0.37 -6.44 16 20 C 0.02 0.32 10.14 101.05 1.03 1.34 16 21 C -0.11 -1.40 1.86 -89.50 -0.17 -1.57 16 22 C -0.12 -1.31 5.53 -25.03 -0.14 -1.45 16 23 C -0.12 -1.17 6.91 -24.69 -0.17 -1.34 16 24 C -0.13 -1.17 6.83 -25.07 -0.17 -1.34 16 25 C -0.12 -1.29 6.06 -25.61 -0.16 -1.45 16 26 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 29 H 0.08 1.38 8.11 -51.93 -0.42 0.95 16 30 H 0.07 0.97 7.61 -51.92 -0.40 0.57 16 31 H 0.04 0.85 7.15 -51.93 -0.37 0.47 16 32 H 0.05 1.11 6.24 -51.93 -0.32 0.78 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.13 1.83 7.50 -51.92 -0.39 1.44 16 35 H 0.15 2.57 6.61 -51.93 -0.34 2.22 16 36 H 0.04 0.57 6.36 -51.93 -0.33 0.24 16 37 H 0.06 1.00 6.54 -51.93 -0.34 0.66 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.06 6.87 -51.93 -0.36 0.70 16 40 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.86 7.25 -51.93 -0.38 0.49 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -31.12 375.79 -9.43 -40.55 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.27 Total: 3.98 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 0.25 Total: -22.47 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.46 Total: -44.58 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -2.32 Total: -48.71 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 50.29 SS G_CDS: -0.56 Total: 49.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.12 -9.43 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594759700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.188 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds