Wall clock time and date at job start Tue Mar 31 2020 12:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47079 * 2 1 4 4 C 1.46498 * 119.99977 * 275.27251 * 3 2 1 5 5 C 1.50699 * 109.47020 * 274.72742 * 4 3 2 6 6 H 1.07994 * 120.00363 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99818 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99767 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00047 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46700 * 90.00481 * 9 7 5 11 11 H 1.48502 * 109.47242 * 210.00433 * 9 7 5 12 12 H 1.48492 * 109.47204 * 330.00630 * 9 7 5 13 13 S 1.65606 * 120.00090 * 94.99748 * 3 2 1 14 14 O 1.42107 * 104.27363 * 206.07350 * 13 3 2 15 15 O 1.42101 * 104.27674 * 333.92726 * 13 3 2 16 16 C 1.81400 * 104.44999 * 90.00092 * 13 3 2 17 17 C 1.52994 * 109.47142 * 180.02562 * 16 13 3 18 18 H 1.09000 * 109.47455 * 59.99774 * 17 16 13 19 19 O 1.42907 * 109.47071 * 300.00076 * 17 16 13 20 20 C 1.42894 * 113.99773 * 298.22611 * 19 17 16 21 21 C 1.52997 * 109.47072 * 179.97438 * 17 16 13 22 22 C 1.54269 * 110.03221 * 292.32804 * 21 17 16 23 23 C 1.54969 * 104.15992 * 217.13852 * 22 21 17 24 24 C 1.54893 * 102.77809 * 37.88757 * 23 22 21 25 25 C 1.53878 * 110.02890 * 175.11397 * 21 17 16 26 26 H 1.09000 * 109.46934 * 60.00605 * 1 2 3 27 27 H 1.09004 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47458 * 300.00265 * 1 2 3 29 29 H 1.08994 * 109.47458 * 239.99735 * 2 1 3 30 30 H 1.09008 * 109.46659 * 119.99538 * 2 1 3 31 31 H 1.09002 * 109.46920 * 34.72809 * 4 3 2 32 32 H 1.09001 * 109.47441 * 154.72366 * 4 3 2 33 33 H 0.97001 * 119.99724 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46732 * 300.00135 * 16 13 3 35 35 H 1.08996 * 109.46668 * 59.99734 * 16 13 3 36 36 H 1.09001 * 109.47134 * 301.60868 * 20 19 17 37 37 H 1.08998 * 109.47442 * 61.61016 * 20 19 17 38 38 H 1.08999 * 109.47323 * 181.61299 * 20 19 17 39 39 H 1.09000 * 110.01647 * 53.72323 * 21 17 16 40 40 H 1.08996 * 110.48223 * 335.78438 * 22 21 17 41 41 H 1.08997 * 110.48359 * 98.42902 * 22 21 17 42 42 H 1.08997 * 110.71881 * 279.57550 * 23 22 21 43 43 H 1.08994 * 110.92087 * 156.29922 * 23 22 21 44 44 H 1.08996 * 110.48613 * 203.40798 * 24 23 22 45 45 H 1.09000 * 110.59852 * 80.81608 * 24 23 22 46 46 H 1.09003 * 110.03260 * 238.56650 * 25 21 17 47 47 H 1.08998 * 110.03338 * 359.94815 * 25 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1526 2.1107 -1.2633 5 6 3.4891 1.7970 -1.8849 6 1 4.1705 1.1221 -1.3884 7 6 3.8423 2.3724 -3.0871 8 7 5.0085 2.0983 -3.6298 9 14 2.6640 3.5403 -3.9456 10 1 2.9230 4.9293 -3.4886 11 1 2.8663 3.4566 -5.4144 12 1 1.2659 3.1635 -3.6163 13 16 2.4121 2.1203 1.4287 14 8 2.2332 3.5056 1.1675 15 8 1.6207 1.4497 2.3999 16 6 4.1697 1.7390 1.6662 17 6 4.6577 2.3741 2.9697 18 1 4.0832 1.9752 3.8057 19 8 4.4822 3.7909 2.9042 20 6 5.2288 4.4213 1.8616 21 6 6.1398 2.0520 3.1703 22 6 6.3216 0.5431 3.4349 23 6 7.4610 0.4766 4.4832 24 6 7.1632 1.6960 5.3907 25 6 6.6749 2.7849 4.4131 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3558 1.8092 -1.9434 32 1 2.0824 3.1818 -1.0737 33 1 5.2571 2.5034 -4.4753 34 1 4.3034 0.6584 1.7166 35 1 4.7440 2.1376 0.8300 36 1 6.2899 4.2117 1.9967 37 1 4.9022 4.0351 0.8961 38 1 5.0639 5.4982 1.8967 39 1 6.7086 2.3477 2.2887 40 1 5.4052 0.1138 3.8400 41 1 6.6135 0.0278 2.5199 42 1 8.4337 0.5812 4.0027 43 1 7.4113 -0.4508 5.0537 44 1 8.0691 2.0211 5.9023 45 1 6.3836 1.4549 6.1134 46 1 7.5040 3.4356 4.1347 47 1 5.8789 3.3707 4.8727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594759700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:50 Heat of formation + Delta-G solvation = -152.623006 kcal Electronic energy + Delta-G solvation = -27302.213997 eV Core-core repulsion = 23610.975425 eV Total energy + Delta-G solvation = -3691.238572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64059 -38.18624 -37.80338 -37.75632 -36.87258 -34.67737 -32.97940 -31.80563 -29.64236 -29.01115 -28.88909 -28.09194 -24.60570 -23.68308 -22.99036 -21.53926 -20.58807 -19.68161 -19.02304 -18.52738 -18.06616 -17.60173 -17.20298 -16.71801 -16.40498 -16.24281 -16.08329 -15.59983 -15.02788 -14.75881 -14.59206 -14.41865 -14.18818 -14.09386 -13.71795 -13.69253 -13.52454 -13.10855 -12.99056 -12.91255 -12.75979 -12.72753 -12.61340 -12.49517 -12.20245 -12.11727 -11.93193 -11.91551 -11.81383 -11.75621 -11.59962 -11.48449 -11.44211 -11.30744 -10.78256 -10.67275 -9.69865 -8.30721 -6.34627 -0.63590 1.35775 1.39689 1.46960 1.78469 2.33830 2.68316 2.88647 3.04760 3.24873 3.37372 3.58045 3.69511 3.83236 3.93127 3.94754 4.27154 4.31804 4.38727 4.43664 4.44680 4.47040 4.57927 4.64491 4.68881 4.70237 4.71857 4.84434 4.90434 4.93886 4.95561 4.98108 5.03622 5.06461 5.11583 5.26612 5.31621 5.39005 5.43549 5.45858 5.47345 5.49474 5.81494 5.99741 6.29335 6.69461 7.30653 8.83862 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.004998 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.097251 B = 5601.145876 C = 6378.086323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.990 5.990 4 C 0.220 3.780 5 C -0.539 4.539 6 H 0.058 0.942 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.918 3.082 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.247 1.247 13 S 2.615 3.385 14 O -0.981 6.981 15 O -0.983 6.983 16 C -0.653 4.653 17 C 0.103 3.897 18 H 0.123 0.877 19 O -0.390 6.390 20 C 0.018 3.982 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.119 4.119 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.160 0.840 35 H 0.136 0.864 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -3.430 14.580 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.827 5.827 4 C 0.095 3.905 5 C -0.578 4.578 6 H 0.077 0.923 7 C -0.172 4.172 8 N -0.574 5.574 9 Si 0.742 3.258 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.170 1.170 13 S 2.711 3.289 14 O -0.972 6.972 15 O -0.974 6.974 16 C -0.784 4.784 17 C 0.044 3.956 18 H 0.141 0.859 19 O -0.309 6.309 20 C -0.078 4.078 21 C -0.132 4.132 22 C -0.162 4.162 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.156 4.156 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.178 0.822 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.577 -2.796 15.056 15.394 hybrid contribution 0.525 0.230 -1.590 1.691 sum 2.102 -2.566 13.466 13.868 Atomic orbital electron populations 1.22199 0.95601 1.03352 1.01576 1.21339 0.95004 0.81146 1.03486 1.57232 1.79450 1.24112 1.21869 1.19316 0.96509 0.92302 0.82326 1.21673 1.01770 1.28077 1.06282 0.92338 1.25555 0.96318 0.97616 0.97757 1.69996 1.22438 1.45405 1.19586 0.86139 0.81264 0.80159 0.78192 1.19636 1.20508 1.17017 1.04581 0.77996 0.73559 0.72767 1.93496 1.85992 1.33536 1.84176 1.93499 1.66839 1.76180 1.60843 1.31234 1.25648 1.13243 1.08285 1.22251 0.98626 0.81056 0.93678 0.85931 1.87992 1.69679 1.19328 1.53897 1.22963 0.96011 0.99042 0.89769 1.22309 0.93474 0.97632 0.99804 1.22484 1.00031 0.93841 0.99893 1.22498 0.97969 0.98772 0.96608 1.22381 1.01400 0.94768 0.97412 1.22165 1.00688 0.98143 0.94652 0.92989 0.89046 0.93321 0.90019 0.89402 0.93877 0.94640 0.92363 0.82183 0.84596 0.91640 0.94974 0.88328 0.90860 0.90580 0.91427 0.91401 0.90260 0.90640 0.91122 0.91431 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 10.23 71.98 0.74 -4.16 16 2 C 0.12 3.73 5.98 86.38 0.52 4.25 16 3 N -0.99 -38.85 2.70 -519.84 -1.40 -40.25 16 4 C 0.22 10.07 4.48 85.63 0.38 10.46 16 5 C -0.54 -27.99 9.94 25.60 0.25 -27.74 16 6 H 0.06 3.21 8.06 -2.91 -0.02 3.18 16 7 C 0.03 1.48 5.47 84.66 0.46 1.94 16 8 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16 9 Si 0.92 41.96 27.47 68.60 1.88 43.85 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 13 S 2.61 99.80 5.17 -56.49 -0.29 99.51 16 14 O -0.98 -44.12 15.80 -123.50 -1.95 -46.07 16 15 O -0.98 -38.08 16.75 -127.65 -2.14 -40.22 16 16 C -0.65 -20.42 5.21 71.98 0.38 -20.05 16 17 C 0.10 2.88 2.07 30.59 0.06 2.94 16 18 H 0.12 3.10 8.01 -2.39 -0.02 3.08 16 19 O -0.39 -12.43 8.92 -142.56 -1.27 -13.71 16 20 C 0.02 0.55 10.14 113.37 1.15 1.70 16 21 C -0.11 -2.58 1.86 -10.07 -0.02 -2.60 16 22 C -0.12 -2.46 5.53 31.70 0.18 -2.28 16 23 C -0.12 -1.95 6.91 31.91 0.22 -1.73 16 24 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 25 C -0.12 -2.36 6.06 31.32 0.19 -2.17 16 26 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.50 7.90 -2.39 -0.02 1.49 16 29 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 30 H 0.09 2.42 7.61 -2.38 -0.02 2.40 16 31 H 0.04 1.92 7.15 -2.39 -0.02 1.90 16 32 H 0.04 1.71 6.24 -2.39 -0.01 1.70 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 34 H 0.16 4.12 7.50 -2.39 -0.02 4.10 16 35 H 0.14 4.75 6.61 -2.39 -0.02 4.74 16 36 H 0.07 1.67 6.36 -2.39 -0.02 1.65 16 37 H 0.03 1.13 6.54 -2.39 -0.02 1.12 16 38 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 1.82 6.87 -2.39 -0.02 1.80 16 40 H 0.08 1.40 7.76 -2.39 -0.02 1.38 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.46 7.25 -2.39 -0.02 1.45 16 Total: -1.00 -66.44 375.79 0.72 -65.72 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.87 Total: 26.21 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 4.73 Total: -41.18 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -1.10 Total: -94.10 kcal Atomic # 8 Polarization: -94.64 SS G_CDS: -5.36 Total: -100.00 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.85 kcal Atomic # 16 Polarization: 99.80 SS G_CDS: -0.29 Total: 99.51 kcal Total: -66.44 0.72 -65.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594759700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.902 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds