Wall clock time and date at job start Tue Mar 31 2020 12:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46808 * 2 1 4 4 C 1.42904 * 113.99912 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47221 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47486 * 305.00590 * 5 4 3 7 7 C 1.53006 * 109.46623 * 65.00419 * 5 4 3 8 8 C 1.52997 * 109.47269 * 185.00255 * 5 4 3 9 9 S 1.81397 * 109.47440 * 175.00407 * 8 5 4 10 10 O 1.42104 * 110.54110 * 291.62631 * 9 8 5 11 11 O 1.42098 * 110.54290 * 68.37209 * 9 8 5 12 12 N 1.65595 * 104.45150 * 179.97438 * 9 8 5 13 13 C 1.46924 * 120.63494 * 269.72224 * 12 9 8 14 14 C 1.52766 * 109.00808 * 233.58767 * 13 12 9 15 15 C 1.53041 * 109.38043 * 305.58256 * 14 13 12 16 16 C 1.53048 * 109.53811 * 61.24016 * 15 14 13 17 17 H 1.09002 * 109.51701 * 58.60332 * 16 15 14 18 18 C 1.50697 * 109.49381 * 178.68212 * 16 15 14 19 19 H 1.08000 * 119.99480 * 119.84215 * 18 16 15 20 20 C 1.37877 * 120.00416 * 299.83448 * 18 16 15 21 21 N 1.31518 * 119.99716 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00222 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46977 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47151 * 120.00513 * 22 20 18 25 25 H 1.48496 * 109.47517 * 240.00746 * 22 20 18 26 26 C 1.46932 * 120.62771 * 90.00210 * 12 9 8 27 27 H 1.09001 * 109.47111 * 299.99856 * 1 2 3 28 28 H 1.08999 * 109.47233 * 59.99981 * 1 2 3 29 29 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47111 * 240.00144 * 2 1 3 31 31 H 1.08999 * 109.47233 * 120.00019 * 2 1 3 32 32 H 1.09000 * 109.46865 * 60.00255 * 4 3 2 33 33 H 1.08994 * 109.47229 * 300.00235 * 4 3 2 34 34 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.46955 * 300.00075 * 7 5 4 36 36 H 1.09000 * 109.47050 * 59.99904 * 7 5 4 37 37 H 1.09006 * 109.47396 * 295.00785 * 8 5 4 38 38 H 1.09001 * 109.46992 * 54.99944 * 8 5 4 39 39 H 1.09001 * 109.58538 * 353.41285 * 13 12 9 40 40 H 1.08994 * 109.59006 * 113.84104 * 13 12 9 41 41 H 1.08996 * 109.56522 * 185.55055 * 14 13 12 42 42 H 1.08998 * 109.39096 * 65.51061 * 14 13 12 43 43 H 1.09004 * 109.45941 * 301.22426 * 15 14 13 44 44 H 1.08994 * 109.45175 * 181.25586 * 15 14 13 45 45 H 0.96998 * 119.99704 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.58477 * 246.15474 * 26 12 9 47 47 H 1.09001 * 109.58583 * 6.43571 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 3.3498 3.4410 -0.8424 7 6 3.3672 3.5890 1.3068 8 6 5.3453 3.0607 -0.1253 9 16 5.8010 4.8101 -0.2747 10 8 5.3582 5.3363 -1.5182 11 8 5.5480 5.4970 0.9432 12 7 7.4522 4.7977 -0.4004 13 6 8.2951 4.8805 0.8001 14 6 9.2852 6.0319 0.6344 15 6 10.0647 5.8478 -0.6697 16 6 9.0944 5.8686 -1.8532 17 1 8.5513 6.8136 -1.8622 18 6 9.8662 5.7197 -3.1389 19 1 9.6696 4.8829 -3.7928 20 6 10.8233 6.6516 -3.4805 21 7 11.0629 7.6703 -2.6839 22 14 11.7794 6.4673 -5.0746 23 1 11.3240 5.2463 -5.7866 24 1 11.5453 7.6565 -5.9326 25 1 13.2287 6.3527 -4.7721 26 6 8.1021 4.7098 -1.7152 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9768 0.8907 34 1 3.6486 4.6421 1.3065 35 1 2.2845 3.5019 1.3959 36 1 3.8427 3.0864 2.1490 37 1 5.8181 2.6363 0.7605 38 1 5.6815 2.5207 -1.0104 39 1 7.6694 5.0615 1.6741 40 1 8.8427 3.9467 0.9273 41 1 9.9792 6.0404 1.4748 42 1 8.7408 6.9757 0.6027 43 1 10.5896 4.8927 -0.6473 44 1 10.7871 6.6567 -0.7782 45 1 11.7359 8.3261 -2.9244 46 1 8.6337 3.7617 -1.7974 47 1 7.3488 4.7756 -2.5003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594804077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:34 Heat of formation + Delta-G solvation = -137.819898 kcal Electronic energy + Delta-G solvation = -25999.468471 eV Core-core repulsion = 22308.871810 eV Total energy + Delta-G solvation = -3690.596661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.67618 -37.71541 -36.90034 -35.83691 -35.44839 -33.30470 -31.43398 -31.12841 -30.08756 -27.68702 -26.41253 -25.11002 -23.60738 -23.09758 -21.67649 -20.82910 -19.49674 -18.34890 -17.39596 -17.16529 -16.55874 -16.24465 -15.94044 -15.73503 -14.89918 -14.83768 -14.57283 -13.97918 -13.82766 -13.42701 -13.26949 -13.19056 -12.97182 -12.80190 -12.72666 -12.51414 -12.16270 -12.11693 -11.88426 -11.73184 -11.69704 -11.45335 -11.32109 -11.21319 -11.12145 -10.98060 -10.83162 -10.68450 -10.40105 -10.18862 -9.92915 -9.90139 -9.78155 -9.35502 -8.81212 -8.43478 -8.15774 -5.99786 -4.07189 0.45650 2.93488 3.29414 3.32602 3.37832 3.41046 4.09982 4.22014 4.41178 4.43725 4.59083 4.63211 4.70084 4.89186 5.01168 5.03219 5.09841 5.23087 5.28907 5.30488 5.34656 5.41327 5.49015 5.57177 5.70011 5.73770 5.76711 5.80135 5.89749 6.04290 6.14766 6.23155 6.34332 6.48285 6.63485 6.64914 6.88757 6.90201 7.02812 7.24234 7.45985 7.72349 7.98206 8.11083 8.40347 8.96440 9.57424 11.05768 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002955 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.631777 B = 9472.299159 C =10197.835566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.076 3.924 5 C -0.077 4.077 6 H 0.092 0.908 7 C -0.175 4.175 8 C -0.637 4.637 9 S 2.607 3.393 10 O -0.949 6.949 11 O -0.957 6.957 12 N -0.993 5.993 13 C 0.123 3.877 14 C -0.131 4.131 15 C -0.110 4.110 16 C 0.042 3.958 17 H 0.032 0.968 18 C -0.514 4.514 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.122 3.878 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.260 0.740 46 H 0.055 0.945 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 -14.623 8.791 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.307 6.307 4 C -0.002 4.002 5 C -0.097 4.097 6 H 0.111 0.889 7 C -0.232 4.232 8 C -0.764 4.764 9 S 2.700 3.300 10 O -0.940 6.940 11 O -0.947 6.947 12 N -0.832 5.832 13 C -0.003 4.003 14 C -0.170 4.170 15 C -0.148 4.148 16 C 0.022 3.978 17 H 0.051 0.949 18 C -0.553 4.553 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.002 4.002 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.426 -13.575 8.798 21.675 hybrid contribution 1.079 -1.133 -0.839 1.776 sum -13.348 -14.709 7.959 21.397 Atomic orbital electron populations 1.21748 0.93682 1.02207 1.03263 1.22462 0.95668 0.83813 1.00067 1.87877 1.20989 1.26381 1.95439 1.22470 0.81268 0.95865 1.00583 1.20759 0.90984 0.96948 1.00968 0.88937 1.22237 1.03135 1.02058 0.95810 1.30865 1.04037 1.29872 1.11586 1.05064 0.73451 0.77108 0.74345 1.93603 1.80576 1.75834 1.43940 1.93538 1.84050 1.69953 1.47208 1.57633 1.22948 1.88719 1.13932 1.21342 0.93628 0.99517 0.85792 1.21864 0.97627 0.97559 0.99993 1.21591 0.99543 1.01748 0.91913 1.18935 0.91902 0.92953 0.94057 0.94948 1.21124 1.19851 1.09664 1.04676 0.92419 1.24953 0.97016 0.95121 0.96838 1.69893 1.33408 1.12748 1.36545 0.86531 0.79646 0.78068 0.83680 1.19783 1.21041 1.21117 1.21858 0.96933 1.01130 0.80239 0.91806 0.91744 0.91147 0.93380 0.93451 0.92879 0.92862 0.90518 0.90661 0.91783 0.85058 0.84916 0.90244 0.92348 0.92567 0.92233 0.94666 0.88743 0.93018 0.92630 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.39 -4.11 9.88 -35.23 -0.35 -4.46 16 4 C 0.08 0.73 5.32 37.16 0.20 0.93 16 5 C -0.08 -0.86 2.62 -90.62 -0.24 -1.10 16 6 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 7 C -0.18 -1.98 8.78 37.16 0.33 -1.65 16 8 C -0.64 -7.02 5.62 37.16 0.21 -6.81 16 9 S 2.61 41.69 5.11 -107.50 -0.55 41.14 16 10 O -0.95 -18.69 16.59 -57.54 -0.95 -19.64 16 11 O -0.96 -16.74 14.32 -57.54 -0.82 -17.56 16 12 N -0.99 -17.21 3.23 -113.76 -0.37 -17.58 16 13 C 0.12 1.96 6.40 -3.93 -0.03 1.93 16 14 C -0.13 -2.46 6.07 -26.83 -0.16 -2.62 16 15 C -0.11 -2.48 4.96 -26.69 -0.13 -2.62 16 16 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 17 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 22 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.12 2.45 5.66 -3.71 -0.02 2.43 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.98 5.61 -51.93 -0.29 0.69 16 35 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.13 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.13 1.26 8.14 -51.92 -0.42 0.84 16 39 H 0.08 1.14 6.85 -51.93 -0.36 0.78 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 45 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -32.05 377.45 -10.01 -42.06 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.45 Total: -0.15 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 0.19 Total: -21.04 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.26 Total: -41.97 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -2.13 Total: -41.66 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 41.69 SS G_CDS: -0.55 Total: 41.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.05 -10.01 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.760 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds