Wall clock time and date at job start Tue Mar 31 2020 12:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46808 * 2 1 4 4 C 1.42904 * 113.99912 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47221 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47486 * 305.00590 * 5 4 3 7 7 C 1.53006 * 109.46623 * 65.00419 * 5 4 3 8 8 C 1.52997 * 109.47269 * 185.00255 * 5 4 3 9 9 S 1.81397 * 109.47440 * 175.00407 * 8 5 4 10 10 O 1.42104 * 110.54110 * 291.62631 * 9 8 5 11 11 O 1.42098 * 110.54290 * 68.37209 * 9 8 5 12 12 N 1.65595 * 104.45150 * 179.97438 * 9 8 5 13 13 C 1.46924 * 120.63494 * 269.72224 * 12 9 8 14 14 C 1.52766 * 109.00808 * 233.58767 * 13 12 9 15 15 C 1.53041 * 109.38043 * 305.58256 * 14 13 12 16 16 C 1.53048 * 109.53811 * 61.24016 * 15 14 13 17 17 H 1.09002 * 109.51701 * 58.60332 * 16 15 14 18 18 C 1.50697 * 109.49381 * 178.68212 * 16 15 14 19 19 H 1.08000 * 119.99480 * 119.84215 * 18 16 15 20 20 C 1.37877 * 120.00416 * 299.83448 * 18 16 15 21 21 N 1.31518 * 119.99716 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00222 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46977 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47151 * 120.00513 * 22 20 18 25 25 H 1.48496 * 109.47517 * 240.00746 * 22 20 18 26 26 C 1.46932 * 120.62771 * 90.00210 * 12 9 8 27 27 H 1.09001 * 109.47111 * 299.99856 * 1 2 3 28 28 H 1.08999 * 109.47233 * 59.99981 * 1 2 3 29 29 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47111 * 240.00144 * 2 1 3 31 31 H 1.08999 * 109.47233 * 120.00019 * 2 1 3 32 32 H 1.09000 * 109.46865 * 60.00255 * 4 3 2 33 33 H 1.08994 * 109.47229 * 300.00235 * 4 3 2 34 34 H 1.09001 * 109.47002 * 179.97438 * 7 5 4 35 35 H 1.08993 * 109.46955 * 300.00075 * 7 5 4 36 36 H 1.09000 * 109.47050 * 59.99904 * 7 5 4 37 37 H 1.09006 * 109.47396 * 295.00785 * 8 5 4 38 38 H 1.09001 * 109.46992 * 54.99944 * 8 5 4 39 39 H 1.09001 * 109.58538 * 353.41285 * 13 12 9 40 40 H 1.08994 * 109.59006 * 113.84104 * 13 12 9 41 41 H 1.08996 * 109.56522 * 185.55055 * 14 13 12 42 42 H 1.08998 * 109.39096 * 65.51061 * 14 13 12 43 43 H 1.09004 * 109.45941 * 301.22426 * 15 14 13 44 44 H 1.08994 * 109.45175 * 181.25586 * 15 14 13 45 45 H 0.96998 * 119.99704 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.58477 * 246.15474 * 26 12 9 47 47 H 1.09001 * 109.58583 * 6.43571 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 3.3498 3.4410 -0.8424 7 6 3.3672 3.5890 1.3068 8 6 5.3453 3.0607 -0.1253 9 16 5.8010 4.8101 -0.2747 10 8 5.3582 5.3363 -1.5182 11 8 5.5480 5.4970 0.9432 12 7 7.4522 4.7977 -0.4004 13 6 8.2951 4.8805 0.8001 14 6 9.2852 6.0319 0.6344 15 6 10.0647 5.8478 -0.6697 16 6 9.0944 5.8686 -1.8532 17 1 8.5513 6.8136 -1.8622 18 6 9.8662 5.7197 -3.1389 19 1 9.6696 4.8829 -3.7928 20 6 10.8233 6.6516 -3.4805 21 7 11.0629 7.6703 -2.6839 22 14 11.7794 6.4673 -5.0746 23 1 11.3240 5.2463 -5.7866 24 1 11.5453 7.6565 -5.9326 25 1 13.2287 6.3527 -4.7721 26 6 8.1021 4.7098 -1.7152 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8892 33 1 3.8333 0.9768 0.8907 34 1 3.6486 4.6421 1.3065 35 1 2.2845 3.5019 1.3959 36 1 3.8427 3.0864 2.1490 37 1 5.8181 2.6363 0.7605 38 1 5.6815 2.5207 -1.0104 39 1 7.6694 5.0615 1.6741 40 1 8.8427 3.9467 0.9273 41 1 9.9792 6.0404 1.4748 42 1 8.7408 6.9757 0.6027 43 1 10.5896 4.8927 -0.6473 44 1 10.7871 6.6567 -0.7782 45 1 11.7359 8.3261 -2.9244 46 1 8.6337 3.7617 -1.7974 47 1 7.3488 4.7756 -2.5003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594804077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:33 Heat of formation + Delta-G solvation = -159.380395 kcal Electronic energy + Delta-G solvation = -26000.403404 eV Core-core repulsion = 22308.871810 eV Total energy + Delta-G solvation = -3691.531594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.39244 -39.26494 -38.24404 -37.05808 -36.39328 -35.18397 -32.73260 -31.99954 -31.84728 -28.61359 -27.16076 -27.02379 -25.13288 -23.64148 -23.34093 -21.71632 -21.09507 -19.66407 -18.85575 -18.18568 -17.96690 -17.30441 -16.97867 -16.94529 -16.53310 -15.76296 -15.69943 -15.28797 -15.14985 -14.84305 -14.57567 -14.41439 -14.17781 -13.93502 -13.83281 -13.74838 -13.27228 -13.16347 -13.12092 -12.91298 -12.76559 -12.67456 -12.64046 -12.52299 -12.41881 -12.37383 -11.95755 -11.90674 -11.81142 -11.76325 -11.57086 -11.40372 -11.01923 -10.73985 -10.53234 -10.40946 -9.69576 -8.06097 -6.21394 -0.76194 1.42401 1.44580 1.55620 1.68215 2.45367 2.60597 2.98654 3.14242 3.20771 3.52567 3.65316 3.82489 3.92372 4.17388 4.21855 4.29195 4.30363 4.37232 4.38779 4.52510 4.55823 4.59450 4.60972 4.67717 4.72472 4.83910 4.85618 4.86772 4.89503 5.00129 5.04889 5.08170 5.11641 5.27498 5.29562 5.32002 5.38208 5.56631 5.67107 5.76978 6.00554 6.19644 6.27422 6.39138 6.91682 7.46827 8.98187 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002955 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.631777 B = 9472.299159 C =10197.835566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.411 6.411 4 C 0.076 3.924 5 C -0.085 4.085 6 H 0.078 0.922 7 C -0.178 4.178 8 C -0.599 4.599 9 S 2.599 3.401 10 O -1.000 7.000 11 O -0.981 6.981 12 N -1.001 6.001 13 C 0.121 3.879 14 C -0.130 4.130 15 C -0.103 4.103 16 C 0.033 3.967 17 H -0.021 1.021 18 C -0.531 4.531 19 H 0.063 0.937 20 C 0.009 3.991 21 N -0.919 5.919 22 Si 0.957 3.043 23 H -0.262 1.262 24 H -0.287 1.287 25 H -0.279 1.279 26 C 0.134 3.866 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.030 0.970 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.259 0.741 46 H 0.082 0.918 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.033 -18.388 9.663 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.332 6.332 4 C -0.001 4.001 5 C -0.105 4.105 6 H 0.097 0.903 7 C -0.236 4.236 8 C -0.732 4.732 9 S 2.698 3.302 10 O -0.991 6.991 11 O -0.971 6.971 12 N -0.839 5.839 13 C -0.004 4.004 14 C -0.169 4.169 15 C -0.141 4.141 16 C 0.013 3.987 17 H -0.003 1.003 18 C -0.569 4.569 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.558 5.558 22 Si 0.783 3.217 23 H -0.186 1.186 24 H -0.214 1.214 25 H -0.205 1.205 26 C 0.009 3.991 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.188 0.812 38 H 0.177 0.823 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.585 -17.287 9.673 24.600 hybrid contribution 1.021 0.027 -1.070 1.479 sum -13.564 -17.260 8.603 23.578 Atomic orbital electron populations 1.21780 0.93246 1.03313 1.02571 1.22666 0.96142 0.82771 1.01105 1.87849 1.21519 1.28144 1.95662 1.22483 0.81209 0.94235 1.02218 1.20844 0.90727 0.98533 1.00403 0.90319 1.22265 1.03582 1.00992 0.96712 1.30487 1.04337 1.23534 1.14816 1.05064 0.72700 0.79406 0.72982 1.93540 1.81023 1.78573 1.45959 1.93507 1.83926 1.72361 1.47299 1.57535 1.23466 1.89667 1.13182 1.21511 0.93374 0.99663 0.85807 1.21822 0.98405 0.97849 0.98847 1.21384 0.98758 1.00665 0.93287 1.18924 0.92883 0.92499 0.94431 1.00254 1.21550 1.19893 1.09733 1.05754 0.91900 1.25789 0.98199 0.94932 1.00027 1.70061 1.34013 1.13519 1.38238 0.85519 0.78348 0.78099 0.79738 1.18576 1.21376 1.20498 1.21504 0.95900 1.00019 0.81675 0.92303 0.92635 0.89162 0.92553 0.92106 0.91617 0.90787 0.92621 0.90506 0.89870 0.81237 0.82323 0.88270 0.88635 0.89814 0.95089 0.93610 0.92550 0.93188 0.90019 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.63 6.66 71.98 0.48 1.11 16 3 O -0.41 -7.70 9.88 -148.98 -1.47 -9.18 16 4 C 0.08 1.19 5.32 71.98 0.38 1.57 16 5 C -0.08 -1.67 2.62 -10.79 -0.03 -1.70 16 6 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 7 C -0.18 -3.66 8.78 71.98 0.63 -3.03 16 8 C -0.60 -10.90 5.62 71.98 0.40 -10.50 16 9 S 2.60 81.01 5.11 -56.49 -0.29 80.73 16 10 O -1.00 -40.57 16.59 -127.65 -2.12 -42.69 16 11 O -0.98 -33.91 14.32 -127.65 -1.83 -35.73 16 12 N -1.00 -33.44 3.23 -513.84 -1.66 -35.09 16 13 C 0.12 3.57 6.40 86.22 0.55 4.12 16 14 C -0.13 -4.85 6.07 30.53 0.19 -4.66 16 15 C -0.10 -4.73 4.96 30.62 0.15 -4.58 16 16 C 0.03 1.65 2.25 -11.46 -0.03 1.63 16 17 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 18 C -0.53 -28.90 8.56 25.60 0.22 -28.69 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.01 0.50 5.30 84.65 0.45 0.94 16 21 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 22 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 26 C 0.13 5.31 5.66 86.36 0.49 5.80 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.38 5.61 -2.39 -0.01 1.37 16 35 H 0.08 1.53 7.82 -2.39 -0.02 1.51 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.17 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.10 2.57 6.85 -2.39 -0.02 2.55 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 3.02 6.05 -2.39 -0.01 3.00 16 45 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 47 H 0.07 2.86 6.86 -2.39 -0.02 2.84 16 Total: -1.00 -74.35 377.45 0.45 -73.90 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.92 Total: 15.13 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 4.63 Total: -38.95 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -1.42 Total: -88.76 kcal Atomic # 8 Polarization: -82.18 SS G_CDS: -5.42 Total: -87.60 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 81.01 SS G_CDS: -0.29 Total: 80.73 kcal Total: -74.35 0.45 -73.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594804077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.485 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds