Wall clock time and date at job start Tue Mar 31 2020 12:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.46888 * 2 1 4 4 C 1.35979 * 116.99999 * 179.97438 * 3 2 1 5 5 C 1.38714 * 119.98477 * 179.97438 * 4 3 2 6 6 C 1.38093 * 120.01348 * 180.02562 * 5 4 3 7 7 C 1.38853 * 119.98383 * 359.97438 * 6 5 4 8 8 N 1.40102 * 120.01139 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00292 * 352.17510 * 8 7 6 10 10 C 1.50702 * 109.47379 * 90.00423 * 9 8 7 11 11 H 1.08000 * 119.99580 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00309 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99903 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00186 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47313 * 60.00335 * 14 12 10 16 16 H 1.48502 * 109.47282 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47351 * 300.00051 * 14 12 10 18 18 C 1.34774 * 119.99792 * 172.17778 * 8 7 6 19 19 O 1.21298 * 120.00124 * 4.11848 * 18 8 7 20 20 C 1.50704 * 120.00229 * 184.12158 * 18 8 7 21 21 H 1.08995 * 109.46906 * 312.56827 * 20 18 8 22 22 O 1.42902 * 109.47226 * 192.56398 * 20 18 8 23 23 C 1.53002 * 109.47152 * 72.56741 * 20 18 8 24 24 C 1.52997 * 117.49795 * 242.07415 * 23 20 18 25 25 C 1.52993 * 117.50125 * 173.41083 * 23 20 18 26 26 C 1.38842 * 119.97017 * 0.27308 * 7 6 5 27 27 C 1.38090 * 119.98395 * 359.48830 * 26 7 6 28 28 H 1.09000 * 109.47517 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47007 * 300.00333 * 1 2 3 30 30 H 1.09000 * 109.47088 * 59.99969 * 1 2 3 31 31 H 1.08995 * 109.47197 * 239.99877 * 2 1 3 32 32 H 1.09004 * 109.46978 * 119.99269 * 2 1 3 33 33 H 1.08001 * 119.99950 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.00668 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47070 * 210.00212 * 9 8 7 36 36 H 1.08995 * 109.47043 * 330.00042 * 9 8 7 37 37 H 0.96997 * 119.99999 * 179.97438 * 13 12 10 38 38 H 0.96698 * 114.00546 * 300.00080 * 22 20 18 39 39 H 1.09005 * 115.54891 * 27.73994 * 23 20 18 40 40 H 1.09003 * 117.49827 * 359.97438 * 24 23 20 41 41 H 1.09002 * 117.50209 * 145.02107 * 24 23 20 42 42 H 1.09001 * 117.50383 * 214.97561 * 25 23 20 43 43 H 1.09008 * 117.49898 * 359.97438 * 25 23 20 44 44 H 1.07995 * 120.00843 * 179.73005 * 26 7 6 45 45 H 1.08002 * 119.99302 * 180.23207 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 3.8841 2.8075 0.0000 6 6 5.2530 2.9891 0.0001 7 6 6.0992 1.8882 0.0011 8 7 7.4881 2.0719 0.0017 9 6 8.0497 3.4138 -0.1716 10 6 8.2163 4.0666 1.1765 11 1 7.9319 3.5351 2.0726 12 6 8.7308 5.3425 1.2657 13 7 9.0757 5.9903 0.1743 14 14 8.9367 6.1519 2.9366 15 1 9.8540 5.3361 3.7722 16 1 9.5049 7.5126 2.7609 17 1 7.6144 6.2508 3.6051 18 6 8.3076 1.0139 0.1615 19 8 7.8462 -0.1058 0.2300 20 6 9.7973 1.2220 0.2553 21 1 10.1220 1.8883 -0.5438 22 8 10.4630 -0.0359 0.1268 23 6 10.1409 1.8448 1.6099 24 6 10.7922 3.2293 1.6060 25 6 11.6220 1.9936 1.9637 26 6 5.5682 0.6053 -0.0036 27 6 4.1991 0.4251 0.0014 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.2259 3.6638 -0.0004 34 1 5.6654 3.9873 -0.0008 35 1 9.0202 3.3409 -0.6624 36 1 7.3765 4.0129 -0.7847 37 1 9.4373 6.8882 0.2370 38 1 10.2216 -0.6800 0.8065 39 1 9.4502 1.6159 2.4214 40 1 10.9762 3.6962 0.6384 41 1 10.5303 3.9110 2.4152 42 1 11.9056 1.8630 3.0080 43 1 12.3516 1.6474 1.2316 44 1 6.2257 -0.2514 -0.0072 45 1 3.7859 -0.5727 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597130258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:53 Heat of formation + Delta-G solvation = -66.089300 kcal Electronic energy + Delta-G solvation = -27713.211516 eV Core-core repulsion = 23890.281376 eV Total energy + Delta-G solvation = -3822.930140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.03240 -40.73840 -39.03073 -38.12640 -36.83608 -35.94925 -34.51470 -32.74886 -31.82283 -30.57546 -29.35153 -27.99710 -25.47250 -24.55945 -23.81026 -22.93049 -22.59062 -21.99107 -20.84912 -19.19928 -18.68792 -18.60227 -18.17117 -17.49965 -16.98603 -16.66372 -16.36654 -16.34412 -15.66943 -15.63505 -15.30968 -14.71288 -14.64618 -14.31782 -14.23419 -14.20265 -13.95913 -13.69635 -13.35888 -13.28283 -13.08821 -12.88155 -12.83257 -12.56444 -12.54013 -12.18716 -12.02326 -11.90633 -11.83598 -11.59283 -11.48225 -11.12781 -10.90379 -10.51580 -10.48653 -10.06027 -9.93568 -8.49571 -8.10844 -6.19432 0.33189 0.43196 1.41421 1.47017 1.49532 1.55952 2.00643 2.33282 2.43950 2.88445 2.95026 3.18958 3.40011 3.50182 3.85140 3.94056 3.98924 4.07976 4.10901 4.20051 4.30686 4.32825 4.39960 4.45314 4.53397 4.58863 4.63953 4.71285 4.90915 4.92922 4.96360 5.04412 5.12465 5.22559 5.24138 5.24979 5.38022 5.41151 5.46509 5.47430 5.62543 5.76006 6.04434 6.06694 6.41426 6.53024 6.61017 6.82196 7.09208 7.45060 8.92969 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.004356 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.344047 B = 6426.554133 C = 7981.444186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.095 3.905 5 C -0.136 4.136 6 C -0.112 4.112 7 C 0.105 3.895 8 N -0.529 5.529 9 C 0.243 3.757 10 C -0.512 4.512 11 H 0.049 0.951 12 C 0.049 3.951 13 N -0.912 5.912 14 Si 0.926 3.074 15 H -0.260 1.260 16 H -0.287 1.287 17 H -0.284 1.284 18 C 0.486 3.514 19 O -0.556 6.556 20 C 0.143 3.857 21 H 0.118 0.882 22 O -0.543 6.543 23 C -0.173 4.173 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.148 4.148 27 C -0.186 4.186 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.040 0.960 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.390 0.610 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.173 0.827 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 -9.298 1.070 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.246 6.246 4 C 0.049 3.951 5 C -0.155 4.155 6 C -0.133 4.133 7 C 0.010 3.990 8 N -0.249 5.249 9 C 0.124 3.876 10 C -0.550 4.550 11 H 0.068 0.932 12 C -0.152 4.152 13 N -0.551 5.551 14 Si 0.753 3.247 15 H -0.185 1.185 16 H -0.212 1.212 17 H -0.210 1.210 18 C 0.277 3.723 19 O -0.439 6.439 20 C 0.081 3.919 21 H 0.136 0.864 22 O -0.349 6.349 23 C -0.193 4.193 24 C -0.159 4.159 25 C -0.197 4.197 26 C -0.168 4.168 27 C -0.205 4.205 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.240 0.760 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.189 0.811 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.441 -9.243 0.516 11.278 hybrid contribution -0.200 0.654 1.230 1.407 sum -6.640 -8.589 1.746 10.996 Atomic orbital electron populations 1.21792 0.91122 1.04177 1.03212 1.23049 0.97083 0.81046 1.01992 1.86032 1.18325 1.31036 1.89160 1.18999 0.82731 0.94030 0.99304 1.20334 0.93958 0.95663 1.05577 1.20890 0.92453 0.98444 1.01473 1.18264 0.83193 0.94612 1.02922 1.45938 1.03812 1.10409 1.64783 1.19444 0.94191 0.76392 0.97621 1.21117 1.42286 0.99692 0.91945 0.93226 1.25174 0.94875 0.96898 0.98258 1.69957 1.43341 1.13257 1.28547 0.86180 0.78330 0.78077 0.82108 1.18452 1.21243 1.21043 1.21982 0.91279 0.83635 0.75375 1.90235 1.76373 1.24803 1.52448 1.21151 0.85963 0.86398 0.98406 0.86445 1.86526 1.66931 1.23930 1.57470 1.22303 0.97242 1.03260 0.96450 1.22690 1.00876 0.89660 1.02684 1.23146 0.91686 1.02140 1.02751 1.22522 0.96183 0.97865 1.00197 1.21366 0.93132 0.98748 1.07283 0.88085 0.91856 0.91739 0.91433 0.91612 0.83931 0.85034 0.94267 0.95342 0.92428 0.76036 0.89351 0.89786 0.90073 0.87700 0.87859 0.81098 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.04 0.86 5.46 71.98 0.39 1.26 16 3 O -0.33 -9.42 10.14 -93.31 -0.95 -10.36 16 4 C 0.09 3.09 6.69 22.50 0.15 3.24 16 5 C -0.14 -4.72 9.98 22.35 0.22 -4.50 16 6 C -0.11 -4.43 9.14 22.38 0.20 -4.22 16 7 C 0.10 4.32 6.49 38.11 0.25 4.57 16 8 N -0.53 -22.30 2.69 -635.17 -1.71 -24.01 16 9 C 0.24 10.88 4.07 85.63 0.35 11.22 16 10 C -0.51 -23.81 5.48 25.60 0.14 -23.67 16 11 H 0.05 2.42 7.75 -2.91 -0.02 2.40 16 12 C 0.05 2.33 4.25 84.65 0.36 2.69 16 13 N -0.91 -45.76 13.29 21.45 0.28 -45.48 16 14 Si 0.93 38.88 27.95 68.60 1.92 40.79 16 15 H -0.26 -10.34 6.53 99.48 0.65 -9.69 16 16 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 18 C 0.49 19.53 6.88 87.66 0.60 20.13 16 19 O -0.56 -23.04 12.72 15.64 0.20 -22.84 16 20 C 0.14 5.07 2.86 29.85 0.09 5.16 16 21 H 0.12 4.34 6.33 -2.39 -0.02 4.32 16 22 O -0.54 -17.45 12.84 -130.25 -1.67 -19.12 16 23 C -0.17 -5.95 3.98 -10.80 -0.04 -5.99 16 24 C -0.12 -4.41 6.65 30.62 0.20 -4.21 16 25 C -0.16 -4.65 10.04 30.62 0.31 -4.34 16 26 C -0.15 -5.65 9.03 22.38 0.20 -5.45 16 27 C -0.19 -6.02 9.03 22.35 0.20 -5.81 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 32 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 33 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 34 H 0.13 5.52 6.26 -2.91 -0.02 5.50 16 35 H 0.04 1.80 5.98 -2.39 -0.01 1.78 16 36 H 0.03 1.37 6.56 -2.39 -0.02 1.36 16 37 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 38 H 0.39 10.54 8.71 -74.06 -0.64 9.89 16 39 H 0.09 3.23 8.06 -2.38 -0.02 3.21 16 40 H 0.08 3.32 7.93 -2.39 -0.02 3.30 16 41 H 0.08 3.17 5.04 -2.39 -0.01 3.16 16 42 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 44 H 0.17 6.85 4.56 -59.62 -0.27 6.58 16 45 H 0.15 3.84 6.29 -2.91 -0.02 3.83 16 Total: -1.00 -54.91 356.55 2.51 -52.40 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: 0.06 Total: 39.93 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.37 Total: -11.32 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -1.42 Total: -69.49 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -2.42 Total: -52.32 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.92 Total: 40.79 kcal Total: -54.91 2.51 -52.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597130258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.690 kcal (2) G-P(sol) polarization free energy of solvation -54.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds