Wall clock time and date at job start Tue Mar 31 2020 12:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46819 * 2 1 4 4 C 1.42894 * 113.99627 * 174.09458 * 3 2 1 5 5 C 1.50702 * 109.62148 * 305.40675 * 4 3 2 6 6 O 1.21285 * 120.00409 * 126.80579 * 5 4 3 7 7 N 1.34783 * 119.99609 * 306.80580 * 5 4 3 8 8 C 1.39934 * 119.99683 * 173.15085 * 7 5 4 9 9 C 1.39292 * 119.94632 * 31.00573 * 8 7 5 10 10 C 1.38491 * 120.42864 * 179.97438 * 9 8 7 11 11 C 1.37680 * 120.32111 * 0.02562 * 10 9 8 12 12 C 1.40745 * 119.88477 * 359.97438 * 11 10 9 13 13 C 1.41412 * 120.21000 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99379 * 23.44339 * 13 12 11 15 15 C 1.39925 * 120.00077 * 203.44367 * 13 12 11 16 16 N 1.30834 * 119.99993 * 19.81838 * 15 13 12 17 17 Si 1.86805 * 119.99921 * 199.82493 * 15 13 12 18 18 H 1.48502 * 109.47025 * 94.96761 * 17 15 13 19 19 H 1.48498 * 109.47093 * 214.96562 * 17 15 13 20 20 H 1.48500 * 109.46812 * 334.96889 * 17 15 13 21 21 C 1.38237 * 119.94820 * 210.71989 * 8 7 5 22 22 C 1.53182 * 109.54523 * 65.62975 * 4 3 2 23 23 C 1.53097 * 109.16164 * 62.88050 * 22 4 3 24 24 O 1.42904 * 109.41250 * 57.61503 * 23 22 4 25 25 C 1.42904 * 114.09584 * 298.83740 * 24 23 22 26 26 C 1.53096 * 109.41667 * 61.16188 * 25 24 23 27 27 H 1.09000 * 109.47438 * 299.99895 * 1 2 3 28 28 H 1.09000 * 109.46676 * 60.00443 * 1 2 3 29 29 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47438 * 240.00104 * 2 1 3 31 31 H 1.08996 * 109.46999 * 119.99921 * 2 1 3 32 32 H 0.97003 * 120.00031 * 353.16075 * 7 5 4 33 33 H 1.07999 * 119.78361 * 359.97438 * 9 8 7 34 34 H 1.07996 * 119.83723 * 180.02562 * 10 9 8 35 35 H 1.07993 * 120.05839 * 179.97438 * 11 10 9 36 36 H 0.97001 * 119.99757 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.16108 * 0.02562 * 21 8 7 38 38 H 1.08999 * 109.51636 * 302.97817 * 22 4 3 39 39 H 1.08996 * 109.52444 * 182.78655 * 22 4 3 40 40 H 1.08999 * 109.47726 * 297.63001 * 23 22 4 41 41 H 1.09000 * 109.48661 * 177.59882 * 23 22 4 42 42 H 1.08998 * 109.48262 * 181.14814 * 25 24 23 43 43 H 1.09002 * 109.48091 * 301.17886 * 25 24 23 44 44 H 1.08997 * 109.52287 * 182.48481 * 26 25 24 45 45 H 1.09001 * 109.52027 * 62.29157 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4243 1.4625 0.1343 5 6 3.8775 0.7236 1.3671 6 8 4.7553 -0.1094 1.2866 7 7 3.3072 0.9886 2.5593 8 6 3.6237 0.2063 3.6755 9 6 4.8890 -0.3652 3.7879 10 6 5.2130 -1.1408 4.8886 11 6 4.2869 -1.3558 5.8844 12 6 3.0044 -0.7846 5.7845 13 6 2.0480 -1.0005 6.8035 14 1 2.3710 -1.2588 7.8012 15 6 0.6833 -0.8796 6.5191 16 7 0.2636 -0.9546 5.2822 17 14 -0.5394 -0.6108 7.9056 18 1 -0.8037 0.8426 8.0577 19 1 -1.8085 -1.3143 7.5898 20 1 0.0220 -1.1470 9.1715 21 6 2.6821 0.0069 4.6678 22 6 4.1062 0.8653 -1.1005 23 6 3.7012 1.6715 -2.3374 24 8 4.0601 3.0420 -2.1495 25 6 3.4161 3.6664 -1.0371 26 6 3.8095 2.9404 0.2521 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.6773 1.7215 2.6434 33 1 5.6220 -0.2025 3.0117 34 1 6.1970 -1.5790 4.9662 35 1 4.5440 -1.9616 6.7406 36 1 -0.6825 -0.8712 5.0852 37 1 1.7022 0.4531 4.5836 38 1 3.7937 -0.1717 -1.2233 39 1 5.1881 0.9084 -0.9758 40 1 2.6240 1.5947 -2.4847 41 1 4.2169 1.2775 -3.2131 42 1 3.7264 4.7095 -0.9760 43 1 2.3351 3.6157 -1.1674 44 1 3.2849 3.3874 1.0965 45 1 4.8855 3.0253 0.4041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597752195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:41 Heat of formation + Delta-G solvation = -109.933316 kcal Electronic energy + Delta-G solvation = -27992.464265 eV Core-core repulsion = 24167.632906 eV Total energy + Delta-G solvation = -3824.831359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93935 -38.90276 -37.46253 -36.92673 -34.36637 -33.39449 -33.03037 -31.27723 -30.50915 -29.59025 -28.58741 -25.67758 -25.20047 -24.02866 -22.70179 -21.85626 -21.22882 -20.23382 -19.49137 -17.74590 -17.47038 -16.84777 -16.13937 -15.84741 -15.56109 -15.37620 -15.09890 -14.82463 -14.79471 -14.50016 -13.82363 -13.65227 -13.38782 -13.04750 -12.87655 -12.66394 -12.52969 -12.35504 -12.17761 -11.87677 -11.74532 -11.53737 -11.41153 -11.28279 -11.12472 -10.99572 -10.77524 -10.60210 -10.52163 -10.09884 -9.93394 -9.83438 -9.78883 -9.42828 -9.04558 -8.77222 -7.42887 -7.00800 -6.78197 -4.39742 2.42437 2.79826 3.04394 3.08218 3.12468 3.24252 3.34454 3.62258 3.81281 3.89915 4.47262 4.56210 4.62444 4.77198 4.84921 5.09332 5.13403 5.23319 5.25274 5.36275 5.41047 5.46858 5.52986 5.61532 5.65810 5.71543 5.81932 5.93602 5.97566 6.07760 6.18582 6.24486 6.63940 6.67457 6.80996 6.97845 7.02900 7.04647 7.05726 7.20786 7.56260 7.64069 7.93352 7.99872 8.10762 8.28485 8.49643 8.67212 8.85272 8.92229 10.13840 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.003923 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.785167 B = 7135.110066 C = 8080.458960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.105 3.895 5 C 0.488 3.512 6 O -0.517 6.517 7 N -0.650 5.650 8 C 0.141 3.859 9 C -0.236 4.236 10 C -0.086 4.086 11 C -0.229 4.229 12 C 0.121 3.879 13 C -0.465 4.465 14 H 0.079 0.921 15 C 0.079 3.921 16 N -0.793 5.793 17 Si 0.905 3.095 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.187 4.187 22 C -0.163 4.163 23 C 0.067 3.933 24 O -0.384 6.384 25 C 0.067 3.933 26 C -0.141 4.141 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.279 0.721 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 7.089 -12.121 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.284 6.284 4 C 0.062 3.938 5 C 0.273 3.727 6 O -0.393 6.393 7 N -0.293 5.293 8 C 0.049 3.951 9 C -0.257 4.257 10 C -0.105 4.105 11 C -0.249 4.249 12 C 0.118 3.882 13 C -0.494 4.494 14 H 0.097 0.903 15 C -0.139 4.139 16 N -0.418 5.418 17 Si 0.730 3.270 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.185 1.185 21 C -0.208 4.208 22 C -0.201 4.201 23 C -0.009 4.009 24 O -0.302 6.302 25 C -0.009 4.009 26 C -0.179 4.179 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.237 0.763 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.003 6.731 -12.498 14.195 hybrid contribution -1.057 -0.132 0.968 1.439 sum -1.054 6.599 -11.530 13.326 Atomic orbital electron populations 1.21693 0.93103 1.02570 1.02862 1.22619 0.95902 0.83233 1.00987 1.87941 1.18966 1.27453 1.94065 1.21749 0.82659 0.96655 0.92726 1.21051 0.83007 0.83633 0.84969 1.90675 1.29578 1.33417 1.85656 1.43439 1.44634 1.33268 1.07940 1.17706 0.94255 0.96059 0.87083 1.20632 0.95826 1.08495 1.00746 1.20466 0.97473 0.98286 0.94297 1.21038 0.96204 1.07171 1.00482 1.17340 0.91357 0.88003 0.91476 1.19550 0.90213 1.42463 0.97209 0.90293 1.25881 0.99614 0.92120 0.96290 1.69851 1.16935 1.34917 1.20083 0.86350 0.79337 0.79341 0.82007 1.19359 1.20347 1.18544 1.20999 0.98164 1.04809 0.96830 1.22527 1.02722 1.00670 0.94198 1.22520 1.00072 0.81478 0.96862 1.87905 1.69061 1.24484 1.48773 1.22506 0.97559 0.96388 0.84479 1.22245 1.03082 0.92109 1.00493 0.91421 0.92238 0.90942 0.93163 0.92217 0.76258 0.86802 0.89079 0.88920 0.91013 0.86136 0.89939 0.89078 0.92519 0.88687 0.88567 0.91974 0.89466 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.05 0.68 5.98 37.16 0.22 0.91 16 3 O -0.36 -5.00 8.91 -35.23 -0.31 -5.31 16 4 C 0.11 1.47 0.56 -91.58 -0.05 1.42 16 5 C 0.49 8.82 4.82 -10.98 -0.05 8.76 16 6 O -0.52 -11.01 13.05 5.55 0.07 -10.94 16 7 N -0.65 -12.36 5.23 -9.91 -0.05 -12.42 16 8 C 0.14 3.28 6.37 -83.77 -0.53 2.74 16 9 C -0.24 -5.64 8.77 -39.10 -0.34 -5.98 16 10 C -0.09 -2.03 10.02 -39.69 -0.40 -2.43 16 11 C -0.23 -5.69 9.79 -38.84 -0.38 -6.07 16 12 C 0.12 3.20 5.58 -106.85 -0.60 2.60 16 13 C -0.46 -12.12 9.04 -37.74 -0.34 -12.46 16 14 H 0.08 1.99 7.92 -52.48 -0.42 1.58 16 15 C 0.08 1.93 5.10 -17.34 -0.09 1.84 16 16 N -0.79 -19.83 11.03 55.55 0.61 -19.22 16 17 Si 0.91 18.23 29.60 -169.99 -5.03 13.20 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.19 -4.70 8.61 -38.69 -0.33 -5.03 16 22 C -0.16 -2.11 4.14 -26.59 -0.11 -2.22 16 23 C 0.07 0.74 6.69 37.21 0.25 0.99 16 24 O -0.38 -4.60 10.77 -35.23 -0.38 -4.98 16 25 C 0.07 0.70 6.69 37.21 0.25 0.95 16 26 C -0.14 -1.66 5.12 -26.59 -0.14 -1.79 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.64 6.79 -51.93 -0.35 0.28 16 31 H 0.06 1.04 6.75 -51.93 -0.35 0.69 16 32 H 0.40 6.71 8.63 -40.82 -0.35 6.36 16 33 H 0.11 2.71 5.82 -52.49 -0.31 2.41 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 37 H 0.12 3.07 6.18 -52.49 -0.32 2.75 16 38 H 0.08 1.09 6.67 -51.93 -0.35 0.74 16 39 H 0.09 1.26 7.94 -51.93 -0.41 0.85 16 40 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 44 H 0.09 0.93 7.96 -51.93 -0.41 0.52 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -29.40 361.03 -8.51 -37.91 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -6.60 Total: 13.49 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.26 Total: -17.16 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.56 Total: -31.64 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.62 Total: -21.24 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.40 -8.51 -37.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597752195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.025 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds