Wall clock time and date at job start Tue Mar 31 2020 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46819 * 2 1 4 4 C 1.42894 * 113.99627 * 174.09458 * 3 2 1 5 5 C 1.50702 * 109.62148 * 305.40675 * 4 3 2 6 6 O 1.21285 * 120.00409 * 126.80579 * 5 4 3 7 7 N 1.34783 * 119.99609 * 306.80580 * 5 4 3 8 8 C 1.39934 * 119.99683 * 173.15085 * 7 5 4 9 9 C 1.39292 * 119.94632 * 31.00573 * 8 7 5 10 10 C 1.38491 * 120.42864 * 179.97438 * 9 8 7 11 11 C 1.37680 * 120.32111 * 0.02562 * 10 9 8 12 12 C 1.40745 * 119.88477 * 359.97438 * 11 10 9 13 13 C 1.41412 * 120.21000 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99379 * 23.44339 * 13 12 11 15 15 C 1.39925 * 120.00077 * 203.44367 * 13 12 11 16 16 N 1.30834 * 119.99993 * 19.81838 * 15 13 12 17 17 Si 1.86805 * 119.99921 * 199.82493 * 15 13 12 18 18 H 1.48502 * 109.47025 * 94.96761 * 17 15 13 19 19 H 1.48498 * 109.47093 * 214.96562 * 17 15 13 20 20 H 1.48500 * 109.46812 * 334.96889 * 17 15 13 21 21 C 1.38237 * 119.94820 * 210.71989 * 8 7 5 22 22 C 1.53182 * 109.54523 * 65.62975 * 4 3 2 23 23 C 1.53097 * 109.16164 * 62.88050 * 22 4 3 24 24 O 1.42904 * 109.41250 * 57.61503 * 23 22 4 25 25 C 1.42904 * 114.09584 * 298.83740 * 24 23 22 26 26 C 1.53096 * 109.41667 * 61.16188 * 25 24 23 27 27 H 1.09000 * 109.47438 * 299.99895 * 1 2 3 28 28 H 1.09000 * 109.46676 * 60.00443 * 1 2 3 29 29 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47438 * 240.00104 * 2 1 3 31 31 H 1.08996 * 109.46999 * 119.99921 * 2 1 3 32 32 H 0.97003 * 120.00031 * 353.16075 * 7 5 4 33 33 H 1.07999 * 119.78361 * 359.97438 * 9 8 7 34 34 H 1.07996 * 119.83723 * 180.02562 * 10 9 8 35 35 H 1.07993 * 120.05839 * 179.97438 * 11 10 9 36 36 H 0.97001 * 119.99757 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.16108 * 0.02562 * 21 8 7 38 38 H 1.08999 * 109.51636 * 302.97817 * 22 4 3 39 39 H 1.08996 * 109.52444 * 182.78655 * 22 4 3 40 40 H 1.08999 * 109.47726 * 297.63001 * 23 22 4 41 41 H 1.09000 * 109.48661 * 177.59882 * 23 22 4 42 42 H 1.08998 * 109.48262 * 181.14814 * 25 24 23 43 43 H 1.09002 * 109.48091 * 301.17886 * 25 24 23 44 44 H 1.08997 * 109.52287 * 182.48481 * 26 25 24 45 45 H 1.09001 * 109.52027 * 62.29157 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4243 1.4625 0.1343 5 6 3.8775 0.7236 1.3671 6 8 4.7553 -0.1094 1.2866 7 7 3.3072 0.9886 2.5593 8 6 3.6237 0.2063 3.6755 9 6 4.8890 -0.3652 3.7879 10 6 5.2130 -1.1408 4.8886 11 6 4.2869 -1.3558 5.8844 12 6 3.0044 -0.7846 5.7845 13 6 2.0480 -1.0005 6.8035 14 1 2.3710 -1.2588 7.8012 15 6 0.6833 -0.8796 6.5191 16 7 0.2636 -0.9546 5.2822 17 14 -0.5394 -0.6108 7.9056 18 1 -0.8037 0.8426 8.0577 19 1 -1.8085 -1.3143 7.5898 20 1 0.0220 -1.1470 9.1715 21 6 2.6821 0.0069 4.6678 22 6 4.1062 0.8653 -1.1005 23 6 3.7012 1.6715 -2.3374 24 8 4.0601 3.0420 -2.1495 25 6 3.4161 3.6664 -1.0371 26 6 3.8095 2.9404 0.2521 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.6773 1.7215 2.6434 33 1 5.6220 -0.2025 3.0117 34 1 6.1970 -1.5790 4.9662 35 1 4.5440 -1.9616 6.7406 36 1 -0.6825 -0.8712 5.0852 37 1 1.7022 0.4531 4.5836 38 1 3.7937 -0.1717 -1.2233 39 1 5.1881 0.9084 -0.9758 40 1 2.6240 1.5947 -2.4847 41 1 4.2169 1.2775 -3.2131 42 1 3.7264 4.7095 -0.9760 43 1 2.3351 3.6157 -1.1674 44 1 3.2849 3.3874 1.0965 45 1 4.8855 3.0253 0.4041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597752195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:40 Heat of formation + Delta-G solvation = -127.770306 kcal Electronic energy + Delta-G solvation = -27993.237735 eV Core-core repulsion = 24167.632906 eV Total energy + Delta-G solvation = -3825.604829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23426 -40.27476 -38.92671 -38.26900 -36.10189 -35.16585 -34.14859 -32.21999 -31.57114 -31.48324 -30.34485 -27.26893 -26.71604 -24.98746 -23.84020 -23.28290 -23.00850 -21.73591 -20.85846 -19.29785 -19.14885 -17.95929 -17.45497 -17.08093 -16.95879 -16.66380 -16.48476 -16.39071 -16.17569 -15.74494 -15.32001 -14.92756 -14.78695 -14.50032 -14.36368 -14.19265 -13.76228 -13.59720 -13.43817 -13.19925 -13.05734 -12.92311 -12.81280 -12.64856 -12.54713 -12.39605 -12.24681 -11.98806 -11.81226 -11.75775 -11.57981 -11.26090 -11.03410 -10.83732 -10.73313 -10.26299 -9.37810 -8.85054 -8.63499 -6.37376 0.72277 1.00064 1.39400 1.44110 1.52366 1.58086 1.97272 2.20798 2.43941 2.71435 2.94257 3.31883 3.52476 3.57938 3.71076 3.90775 4.00748 4.16923 4.23565 4.26638 4.34879 4.40475 4.43757 4.54814 4.67317 4.73256 4.75296 4.75887 4.81749 4.93012 4.94943 4.99122 5.03962 5.10687 5.11995 5.17003 5.19671 5.30990 5.70576 5.77789 5.88216 6.02373 6.05676 6.20138 6.29807 6.49420 6.67665 6.90981 6.93916 7.10596 8.30428 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.003923 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.785167 B = 7135.110066 C = 8080.458960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 O -0.357 6.357 4 C 0.112 3.888 5 C 0.488 3.512 6 O -0.551 6.551 7 N -0.647 5.647 8 C 0.147 3.853 9 C -0.251 4.251 10 C -0.084 4.084 11 C -0.250 4.250 12 C 0.095 3.905 13 C -0.498 4.498 14 H 0.077 0.923 15 C 0.042 3.958 16 N -0.818 5.818 17 Si 0.980 3.020 18 H -0.260 1.260 19 H -0.268 1.268 20 H -0.260 1.260 21 C -0.205 4.205 22 C -0.161 4.161 23 C 0.072 3.928 24 O -0.394 6.394 25 C 0.070 3.930 26 C -0.142 4.142 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.020 0.980 32 H 0.414 0.586 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.289 0.711 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 8.300 -13.179 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 O -0.277 6.277 4 C 0.069 3.931 5 C 0.275 3.725 6 O -0.429 6.429 7 N -0.290 5.290 8 C 0.054 3.946 9 C -0.272 4.272 10 C -0.103 4.103 11 C -0.270 4.270 12 C 0.092 3.908 13 C -0.527 4.527 14 H 0.095 0.905 15 C -0.174 4.174 16 N -0.443 5.443 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.227 4.227 22 C -0.199 4.199 23 C -0.004 4.004 24 O -0.313 6.313 25 C -0.007 4.007 26 C -0.179 4.179 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.250 0.750 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.160 7.963 -13.582 15.787 hybrid contribution -0.655 -0.549 1.238 1.505 sum -1.815 7.413 -12.344 14.513 Atomic orbital electron populations 1.21679 0.91478 1.03228 1.03306 1.22642 0.97217 0.83130 0.99777 1.87962 1.18652 1.27241 1.93800 1.21779 0.82847 0.97718 0.90722 1.21911 0.81943 0.83034 0.85584 1.90645 1.31144 1.34907 1.86184 1.43420 1.44987 1.33171 1.07429 1.17761 0.93635 0.95535 0.87650 1.20798 0.96170 1.09218 1.01029 1.20764 0.98401 0.97587 0.93562 1.21205 0.96296 1.08033 1.01425 1.17737 0.92296 0.88560 0.92232 1.19805 0.91501 1.44206 0.97204 0.90473 1.26707 1.00848 0.91007 0.98873 1.69888 1.18011 1.34472 1.21928 0.85225 0.76759 0.79521 0.78422 1.18506 1.19268 1.18382 1.20931 0.98259 1.05813 0.97652 1.22537 1.01865 1.00834 0.94709 1.22581 1.00772 0.80857 0.96207 1.87904 1.69468 1.24751 1.49185 1.22633 0.97821 0.97222 0.83009 1.22328 1.03108 0.90428 1.02080 0.92713 0.89950 0.90255 0.91618 0.96167 0.74985 0.86788 0.86425 0.88137 0.90042 0.86972 0.90507 0.90216 0.91735 0.86711 0.86140 0.91465 0.88450 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 10.28 71.98 0.74 -2.47 16 2 C 0.05 1.33 5.98 71.98 0.43 1.76 16 3 O -0.36 -9.33 8.91 -148.98 -1.33 -10.66 16 4 C 0.11 3.04 0.56 -11.42 -0.01 3.03 16 5 C 0.49 17.78 4.82 87.66 0.42 18.20 16 6 O -0.55 -23.92 13.05 -3.05 -0.04 -23.96 16 7 N -0.65 -25.01 5.23 -303.64 -1.59 -26.60 16 8 C 0.15 7.04 6.37 38.10 0.24 7.28 16 9 C -0.25 -12.23 8.77 22.58 0.20 -12.03 16 10 C -0.08 -4.02 10.02 22.20 0.22 -3.80 16 11 C -0.25 -12.71 9.79 22.75 0.22 -12.49 16 12 C 0.09 5.15 5.58 -21.31 -0.12 5.04 16 13 C -0.50 -26.60 9.04 23.46 0.21 -26.39 16 14 H 0.08 3.99 7.92 -2.91 -0.02 3.97 16 15 C 0.04 2.04 5.10 85.25 0.43 2.48 16 16 N -0.82 -41.35 11.03 21.82 0.24 -41.11 16 17 Si 0.98 37.07 29.60 68.60 2.03 39.10 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 19 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 C -0.20 -10.65 8.61 22.85 0.20 -10.46 16 22 C -0.16 -4.00 4.14 30.69 0.13 -3.88 16 23 C 0.07 1.41 6.69 72.01 0.48 1.89 16 24 O -0.39 -8.41 10.77 -148.98 -1.60 -10.01 16 25 C 0.07 1.25 6.69 72.01 0.48 1.73 16 26 C -0.14 -3.08 5.12 30.69 0.16 -2.92 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.59 6.79 -2.39 -0.02 1.57 16 31 H 0.02 0.71 6.75 -2.39 -0.02 0.70 16 32 H 0.41 13.91 8.63 -92.71 -0.80 13.11 16 33 H 0.11 5.53 5.82 -2.91 -0.02 5.51 16 34 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 36 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 37 H 0.11 5.92 6.18 -2.91 -0.02 5.90 16 38 H 0.08 1.97 6.67 -2.39 -0.02 1.96 16 39 H 0.08 2.17 7.94 -2.39 -0.02 2.15 16 40 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 1.17 7.82 -2.39 -0.02 1.15 16 44 H 0.10 1.91 7.96 -2.39 -0.02 1.89 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.45 361.03 2.36 -62.09 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: 0.21 Total: 44.16 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 4.45 Total: -33.02 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -1.35 Total: -67.71 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -2.97 Total: -44.62 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -64.45 2.36 -62.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597752195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.679 kcal (2) G-P(sol) polarization free energy of solvation -64.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds