Wall clock time and date at job start Tue Mar 31 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 N 1.46498 * 109.47334 * 239.99684 * 2 1 3 5 5 C 1.34775 * 120.00127 * 85.00127 * 4 2 1 6 6 O 1.21612 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.47428 * 120.00295 * 179.97438 * 5 4 2 8 8 C 1.39229 * 120.28220 * 354.16603 * 7 5 4 9 9 C 1.38215 * 120.09152 * 180.27190 * 8 7 5 10 10 C 1.38829 * 120.67536 * 359.49161 * 9 8 7 11 11 C 1.37593 * 120.57033 * 0.50984 * 10 9 8 12 12 C 1.40708 * 119.88082 * 359.74676 * 11 10 9 13 13 C 1.40893 * 120.32463 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00023 * 145.83425 * 13 12 11 15 15 C 1.40273 * 119.99787 * 325.82802 * 13 12 11 16 16 N 1.30622 * 120.00541 * 350.76511 * 15 13 12 17 17 Si 1.86803 * 119.99575 * 170.75999 * 15 13 12 18 18 H 1.48501 * 109.47043 * 90.00033 * 17 15 13 19 19 H 1.48502 * 109.47429 * 210.00131 * 17 15 13 20 20 H 1.48499 * 109.47392 * 330.00345 * 17 15 13 21 21 C 1.50707 * 109.46960 * 119.99837 * 2 1 3 22 22 O 1.20822 * 120.00039 * 119.99833 * 21 2 1 23 23 O 1.34233 * 119.99619 * 300.00182 * 21 2 1 24 24 C 1.45205 * 116.99520 * 180.02562 * 23 21 2 25 25 C 1.52994 * 109.47274 * 59.99810 * 24 23 21 26 26 C 1.53003 * 109.46890 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.46902 * 299.99493 * 24 23 21 28 28 H 1.09005 * 109.47375 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47366 * 300.00365 * 1 2 3 30 30 H 1.08997 * 109.47086 * 60.00391 * 1 2 3 31 31 H 0.97008 * 119.99887 * 265.00307 * 4 2 1 32 32 H 1.08007 * 119.94792 * 359.97438 * 8 7 5 33 33 H 1.08010 * 119.65922 * 179.72091 * 9 8 7 34 34 H 1.07999 * 119.71065 * 180.28492 * 10 9 8 35 35 H 1.08000 * 120.05684 * 179.77054 * 11 10 9 36 36 H 0.97000 * 120.00520 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47028 * 59.99918 * 25 24 23 38 38 H 1.08997 * 109.47391 * 179.97438 * 25 24 23 39 39 H 1.08999 * 109.47255 * 300.00193 * 25 24 23 40 40 H 1.09008 * 109.46873 * 59.99906 * 26 24 23 41 41 H 1.08993 * 109.46920 * 179.97438 * 26 24 23 42 42 H 1.09002 * 109.47223 * 299.99965 * 26 24 23 43 43 H 1.09005 * 109.46935 * 60.00724 * 27 24 23 44 44 H 1.08997 * 109.46626 * 180.02562 * 27 24 23 45 45 H 1.08994 * 109.47678 * 300.00311 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1617 -2.4117 7 6 2.6391 -0.7133 -3.5607 8 6 3.0867 -2.0290 -3.4780 9 6 3.5524 -2.6749 -4.6078 10 6 3.5707 -2.0284 -5.8363 11 6 3.1349 -0.7282 -5.9494 12 6 2.6609 -0.0464 -4.8135 13 6 2.2119 1.2849 -4.9188 14 1 1.3958 1.6300 -4.3013 15 6 2.8249 2.1621 -5.8256 16 7 3.9212 1.8056 -6.4399 17 14 2.0733 3.8403 -6.1548 18 1 2.6349 4.8300 -5.2006 19 1 2.3872 4.2593 -7.5445 20 1 0.6004 3.7658 -5.9811 21 6 2.0323 -0.7104 1.2306 22 8 2.7269 -1.6928 1.1197 23 8 1.7079 -0.2517 2.4497 24 6 2.2275 -0.9856 3.5898 25 6 3.7567 -0.9840 3.5434 26 6 1.7563 -0.3184 4.8835 27 6 1.7173 -2.4273 3.5438 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6319 -1.1525 32 1 3.0744 -2.5441 -2.5288 33 1 3.9022 -3.6941 -4.5348 34 1 3.9336 -2.5494 -6.7099 35 1 3.1563 -0.2321 -6.9085 36 1 4.3449 2.4121 -7.0672 37 1 4.1202 0.0431 3.5761 38 1 4.1468 -1.5345 4.3994 39 1 4.0928 -1.4591 2.6217 40 1 0.6668 -0.3191 4.9168 41 1 2.1460 -0.8695 5.7393 42 1 2.1201 0.7087 4.9160 43 1 2.0534 -2.9024 2.6221 44 1 2.1070 -2.9780 4.3999 45 1 0.6278 -2.4285 3.5768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601127947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:01 Heat of formation + Delta-G solvation = -108.082874 kcal Electronic energy + Delta-G solvation = -27125.075569 eV Core-core repulsion = 23300.324451 eV Total energy + Delta-G solvation = -3824.751118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03564 -39.05085 -37.37305 -36.66733 -34.68393 -34.10084 -33.61211 -30.95719 -29.82297 -28.93888 -27.64230 -27.60098 -25.51885 -24.93227 -22.72512 -21.45135 -20.72847 -19.67408 -19.43700 -17.78722 -17.14625 -16.81775 -16.19044 -15.81132 -15.47228 -15.17072 -14.61184 -14.36039 -14.11672 -13.91140 -13.79855 -13.59098 -13.11905 -12.76254 -12.71600 -12.67721 -12.39305 -12.29343 -12.16739 -12.12074 -12.05563 -11.69843 -11.59784 -11.47507 -11.18680 -11.09564 -10.97846 -10.69984 -10.55132 -10.52870 -10.10425 -9.97069 -9.67014 -9.26389 -8.57674 -8.47037 -7.58678 -7.35726 -6.79799 -4.38936 2.15631 2.32394 2.46370 2.82655 3.10274 3.17263 3.24349 3.87098 3.97509 4.11564 4.44844 4.52143 4.53543 4.67796 4.68450 5.17849 5.23852 5.25616 5.30657 5.45463 5.48088 5.59391 5.61805 5.63693 5.71671 5.76257 5.85323 6.03760 6.03870 6.08981 6.15794 6.25497 6.31856 6.41105 6.61007 6.93700 6.97691 7.13364 7.21555 7.46765 7.63631 7.74439 7.88820 7.97885 8.17975 8.32321 8.65456 8.81800 8.89131 9.32036 10.15509 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.003379 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.688287 B = 8283.288674 C = 9360.752154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.121 0.879 4 N -0.735 5.735 5 C 0.571 3.429 6 O -0.536 6.536 7 C -0.262 4.262 8 C -0.055 4.055 9 C -0.245 4.245 10 C -0.094 4.094 11 C -0.148 4.148 12 C 0.147 3.853 13 C -0.416 4.416 14 H 0.105 0.895 15 C 0.069 3.931 16 N -0.792 5.792 17 Si 0.918 3.082 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.259 1.259 21 C 0.465 3.535 22 O -0.499 6.499 23 O -0.346 6.346 24 C 0.115 3.885 25 C -0.184 4.184 26 C -0.140 4.140 27 C -0.183 4.183 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.282 0.718 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 -4.213 16.092 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.139 0.861 4 N -0.393 5.393 5 C 0.366 3.634 6 O -0.414 6.414 7 C -0.267 4.267 8 C -0.074 4.074 9 C -0.264 4.264 10 C -0.113 4.113 11 C -0.167 4.167 12 C 0.143 3.857 13 C -0.444 4.444 14 H 0.123 0.877 15 C -0.149 4.149 16 N -0.417 5.417 17 Si 0.742 3.258 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.183 1.183 21 C 0.307 3.693 22 O -0.386 6.386 23 O -0.263 6.263 24 C 0.079 3.921 25 C -0.241 4.241 26 C -0.197 4.197 27 C -0.240 4.240 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.239 0.761 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.829 -3.556 15.898 16.734 hybrid contribution 0.227 0.063 0.009 0.236 sum -3.602 -3.493 15.907 16.679 Atomic orbital electron populations 1.22120 0.92569 1.02787 1.03936 1.20199 0.95747 0.97985 0.81122 0.86129 1.45970 1.70857 1.14427 1.08072 1.18439 0.76657 0.86294 0.82051 1.90680 1.50577 1.15687 1.84418 1.19349 1.18562 0.96174 0.92583 1.20694 0.96628 0.93587 0.96455 1.20294 1.12984 0.99438 0.93706 1.20812 0.99148 0.95344 0.96035 1.21349 1.03620 0.92895 0.98859 1.17464 0.86812 0.92653 0.88764 1.20164 1.14615 0.94363 1.15265 0.87679 1.26125 0.94049 1.01386 0.93345 1.69713 1.14262 1.37194 1.20572 0.86148 0.80817 0.81038 0.77784 1.19311 1.20341 1.18285 1.23876 0.77295 0.83013 0.85101 1.90559 1.35217 1.25834 1.87023 1.86553 1.69603 1.55651 1.14528 1.22201 0.94138 0.91739 0.84001 1.22499 0.93930 1.03075 1.04638 1.21846 1.02388 1.01468 0.94000 1.22489 1.01645 0.95234 1.04617 0.92254 0.90908 0.90049 0.76140 0.89077 0.89066 0.89060 0.86441 0.90695 0.91909 0.91118 0.89653 0.91443 0.90440 0.91397 0.89699 0.91135 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.42 37.16 0.35 -1.72 16 2 C 0.16 2.43 3.09 -69.08 -0.21 2.22 16 3 H 0.12 1.97 7.58 -51.93 -0.39 1.58 16 4 N -0.74 -13.47 4.90 -56.01 -0.27 -13.74 16 5 C 0.57 13.05 7.68 -12.52 -0.10 12.96 16 6 O -0.54 -13.56 13.26 5.27 0.07 -13.49 16 7 C -0.26 -6.41 5.92 -104.37 -0.62 -7.03 16 8 C -0.05 -1.20 9.52 -39.22 -0.37 -1.57 16 9 C -0.24 -5.29 10.03 -39.37 -0.39 -5.69 16 10 C -0.09 -2.14 10.01 -39.60 -0.40 -2.54 16 11 C -0.15 -3.75 8.62 -38.88 -0.34 -4.09 16 12 C 0.15 3.93 5.51 -106.54 -0.59 3.34 16 13 C -0.42 -11.29 7.67 -37.81 -0.29 -11.58 16 14 H 0.11 2.92 5.92 -52.49 -0.31 2.61 16 15 C 0.07 1.77 5.25 -17.30 -0.09 1.68 16 16 N -0.79 -20.49 11.14 55.56 0.62 -19.87 16 17 Si 0.92 19.49 29.57 -169.99 -5.03 14.46 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 C 0.46 6.67 6.63 36.01 0.24 6.90 16 22 O -0.50 -7.83 11.34 -18.75 -0.21 -8.04 16 23 O -0.35 -4.35 9.79 -39.27 -0.38 -4.73 16 24 C 0.12 1.19 1.13 -90.62 -0.10 1.09 16 25 C -0.18 -1.93 8.37 37.15 0.31 -1.62 16 26 C -0.14 -1.06 8.85 37.16 0.33 -0.73 16 27 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.40 6.97 5.86 -40.82 -0.24 6.73 16 32 H 0.09 1.72 6.44 -52.48 -0.34 1.38 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.12 3.03 6.60 -52.49 -0.35 2.69 16 36 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.10 5.89 -51.93 -0.31 0.79 16 40 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.02 5.89 -51.93 -0.31 0.71 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -29.46 367.37 -8.08 -37.54 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.44 Total: 12.18 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.96 Total: -9.85 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.34 Total: -33.61 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.53 Total: -26.26 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.46 -8.08 -37.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601127947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.542 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds