Wall clock time and date at job start Tue Mar 31 2020 12:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 N 1.46498 * 109.47334 * 239.99684 * 2 1 3 5 5 C 1.34775 * 120.00127 * 85.00127 * 4 2 1 6 6 O 1.21612 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.47428 * 120.00295 * 179.97438 * 5 4 2 8 8 C 1.39229 * 120.28220 * 354.16603 * 7 5 4 9 9 C 1.38215 * 120.09152 * 180.27190 * 8 7 5 10 10 C 1.38829 * 120.67536 * 359.49161 * 9 8 7 11 11 C 1.37593 * 120.57033 * 0.50984 * 10 9 8 12 12 C 1.40708 * 119.88082 * 359.74676 * 11 10 9 13 13 C 1.40893 * 120.32463 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00023 * 145.83425 * 13 12 11 15 15 C 1.40273 * 119.99787 * 325.82802 * 13 12 11 16 16 N 1.30622 * 120.00541 * 350.76511 * 15 13 12 17 17 Si 1.86803 * 119.99575 * 170.75999 * 15 13 12 18 18 H 1.48501 * 109.47043 * 90.00033 * 17 15 13 19 19 H 1.48502 * 109.47429 * 210.00131 * 17 15 13 20 20 H 1.48499 * 109.47392 * 330.00345 * 17 15 13 21 21 C 1.50707 * 109.46960 * 119.99837 * 2 1 3 22 22 O 1.20822 * 120.00039 * 119.99833 * 21 2 1 23 23 O 1.34233 * 119.99619 * 300.00182 * 21 2 1 24 24 C 1.45205 * 116.99520 * 180.02562 * 23 21 2 25 25 C 1.52994 * 109.47274 * 59.99810 * 24 23 21 26 26 C 1.53003 * 109.46890 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.46902 * 299.99493 * 24 23 21 28 28 H 1.09005 * 109.47375 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47366 * 300.00365 * 1 2 3 30 30 H 1.08997 * 109.47086 * 60.00391 * 1 2 3 31 31 H 0.97008 * 119.99887 * 265.00307 * 4 2 1 32 32 H 1.08007 * 119.94792 * 359.97438 * 8 7 5 33 33 H 1.08010 * 119.65922 * 179.72091 * 9 8 7 34 34 H 1.07999 * 119.71065 * 180.28492 * 10 9 8 35 35 H 1.08000 * 120.05684 * 179.77054 * 11 10 9 36 36 H 0.97000 * 120.00520 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47028 * 59.99918 * 25 24 23 38 38 H 1.08997 * 109.47391 * 179.97438 * 25 24 23 39 39 H 1.08999 * 109.47255 * 300.00193 * 25 24 23 40 40 H 1.09008 * 109.46873 * 59.99906 * 26 24 23 41 41 H 1.08993 * 109.46920 * 179.97438 * 26 24 23 42 42 H 1.09002 * 109.47223 * 299.99965 * 26 24 23 43 43 H 1.09005 * 109.46935 * 60.00724 * 27 24 23 44 44 H 1.08997 * 109.46626 * 180.02562 * 27 24 23 45 45 H 1.08994 * 109.47678 * 300.00311 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1617 -2.4117 7 6 2.6391 -0.7133 -3.5607 8 6 3.0867 -2.0290 -3.4780 9 6 3.5524 -2.6749 -4.6078 10 6 3.5707 -2.0284 -5.8363 11 6 3.1349 -0.7282 -5.9494 12 6 2.6609 -0.0464 -4.8135 13 6 2.2119 1.2849 -4.9188 14 1 1.3958 1.6300 -4.3013 15 6 2.8249 2.1621 -5.8256 16 7 3.9212 1.8056 -6.4399 17 14 2.0733 3.8403 -6.1548 18 1 2.6349 4.8300 -5.2006 19 1 2.3872 4.2593 -7.5445 20 1 0.6004 3.7658 -5.9811 21 6 2.0323 -0.7104 1.2306 22 8 2.7269 -1.6928 1.1197 23 8 1.7079 -0.2517 2.4497 24 6 2.2275 -0.9856 3.5898 25 6 3.7567 -0.9840 3.5434 26 6 1.7563 -0.3184 4.8835 27 6 1.7173 -2.4273 3.5438 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6319 -1.1525 32 1 3.0744 -2.5441 -2.5288 33 1 3.9022 -3.6941 -4.5348 34 1 3.9336 -2.5494 -6.7099 35 1 3.1563 -0.2321 -6.9085 36 1 4.3449 2.4121 -7.0672 37 1 4.1202 0.0431 3.5761 38 1 4.1468 -1.5345 4.3994 39 1 4.0928 -1.4591 2.6217 40 1 0.6668 -0.3191 4.9168 41 1 2.1460 -0.8695 5.7393 42 1 2.1201 0.7087 4.9160 43 1 2.0534 -2.9024 2.6221 44 1 2.1070 -2.9780 4.3999 45 1 0.6278 -2.4285 3.5768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601127947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:01 Heat of formation + Delta-G solvation = -123.953821 kcal Electronic energy + Delta-G solvation = -27125.763785 eV Core-core repulsion = 23300.324451 eV Total energy + Delta-G solvation = -3825.439334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.14105 -40.72664 -38.82799 -38.10458 -36.13384 -35.53192 -35.01048 -32.54212 -31.67728 -30.58327 -28.38851 -28.29622 -27.33987 -26.17628 -24.30468 -22.99807 -22.30658 -21.19945 -20.62647 -19.48241 -18.71548 -17.88020 -17.40141 -17.24188 -17.05888 -16.65039 -15.97504 -15.80847 -15.62091 -15.33612 -15.05878 -14.79311 -14.58572 -14.48964 -14.13773 -13.88255 -13.48308 -13.40559 -13.25442 -13.11814 -12.95674 -12.88931 -12.85508 -12.81184 -12.73341 -12.50745 -12.44792 -12.28956 -12.08679 -11.90417 -11.49493 -11.43388 -11.13658 -11.05505 -10.34054 -10.14831 -9.42122 -9.24219 -8.66954 -6.35950 0.49421 1.01268 1.01901 1.34623 1.35893 1.48804 1.51895 2.22141 2.29964 2.42352 2.79281 3.42891 3.71066 3.73062 3.77821 3.94273 3.96664 4.02952 4.33426 4.34581 4.54643 4.58587 4.60188 4.66913 4.73107 4.75870 4.80694 4.85847 4.88001 4.91067 5.09403 5.11818 5.15922 5.24098 5.25582 5.27951 5.33749 5.43022 5.48219 5.61198 5.81961 6.03742 6.10331 6.33307 6.57446 6.65907 6.75320 6.90235 6.98274 7.55776 8.30660 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.003379 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.688287 B = 8283.288674 C = 9360.752154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.110 0.890 4 N -0.720 5.720 5 C 0.569 3.431 6 O -0.567 6.567 7 C -0.281 4.281 8 C -0.054 4.054 9 C -0.238 4.238 10 C -0.091 4.091 11 C -0.176 4.176 12 C 0.118 3.882 13 C -0.454 4.454 14 H 0.086 0.914 15 C 0.031 3.969 16 N -0.823 5.823 17 Si 0.981 3.019 18 H -0.270 1.270 19 H -0.259 1.259 20 H -0.261 1.261 21 C 0.474 3.526 22 O -0.513 6.513 23 O -0.346 6.346 24 C 0.104 3.896 25 C -0.183 4.183 26 C -0.136 4.136 27 C -0.180 4.180 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.408 0.592 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.289 0.711 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 -5.528 18.199 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.127 0.873 4 N -0.377 5.377 5 C 0.363 3.637 6 O -0.448 6.448 7 C -0.286 4.286 8 C -0.073 4.073 9 C -0.257 4.257 10 C -0.109 4.109 11 C -0.195 4.195 12 C 0.114 3.886 13 C -0.483 4.483 14 H 0.104 0.896 15 C -0.184 4.184 16 N -0.449 5.449 17 Si 0.802 3.198 18 H -0.196 1.196 19 H -0.183 1.183 20 H -0.185 1.185 21 C 0.317 3.683 22 O -0.402 6.402 23 O -0.262 6.262 24 C 0.069 3.931 25 C -0.240 4.240 26 C -0.192 4.192 27 C -0.237 4.237 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.246 0.754 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.010 -4.907 18.039 19.120 hybrid contribution 0.328 0.277 -0.473 0.639 sum -3.682 -4.631 17.566 18.535 Atomic orbital electron populations 1.22052 0.90640 1.03617 1.04212 1.20344 0.97247 0.97231 0.80791 0.87278 1.45696 1.69685 1.14492 1.07855 1.18337 0.76450 0.85911 0.82970 1.90657 1.51972 1.17037 1.85110 1.19729 1.18632 0.97479 0.92731 1.21037 0.95448 0.92603 0.98224 1.20773 1.11137 1.00931 0.92838 1.21177 0.97573 0.94327 0.97834 1.21312 1.05846 0.94301 0.98041 1.17838 0.87562 0.93103 0.90118 1.20157 1.15648 0.95518 1.16952 0.89589 1.26828 0.94194 1.04541 0.92811 1.69741 1.15107 1.38641 1.21394 0.85228 0.79675 0.76555 0.78359 1.19559 1.18264 1.18455 1.23424 0.76974 0.82525 0.85406 1.90568 1.35798 1.26443 1.87342 1.86540 1.69431 1.55904 1.14332 1.22610 0.94111 0.92390 0.84030 1.22490 0.94235 1.03032 1.04288 1.21881 1.02883 1.01551 0.92927 1.22463 1.02104 0.94766 1.04346 0.91108 0.88255 0.92100 0.75406 0.85888 0.85232 0.86130 0.87968 0.89983 0.92079 0.88717 0.92349 0.90821 0.88055 0.91407 0.92103 0.88916 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.42 71.98 0.68 -3.12 16 2 C 0.15 4.63 3.09 44.25 0.14 4.77 16 3 H 0.11 3.65 7.58 -2.39 -0.02 3.63 16 4 N -0.72 -26.35 4.90 -449.37 -2.20 -28.56 16 5 C 0.57 26.71 7.68 86.66 0.67 27.37 16 6 O -0.57 -30.03 13.26 -4.07 -0.05 -30.08 16 7 C -0.28 -13.97 5.92 -19.70 -0.12 -14.09 16 8 C -0.05 -2.30 9.52 22.50 0.21 -2.09 16 9 C -0.24 -9.67 10.03 22.41 0.22 -9.44 16 10 C -0.09 -4.00 10.01 22.26 0.22 -3.77 16 11 C -0.18 -9.13 8.62 22.72 0.20 -8.93 16 12 C 0.12 6.51 5.51 -21.11 -0.12 6.40 16 13 C -0.45 -25.97 7.67 23.42 0.18 -25.79 16 14 H 0.09 5.10 5.92 -2.91 -0.02 5.09 16 15 C 0.03 1.66 5.25 85.37 0.45 2.10 16 16 N -0.82 -44.06 11.14 21.88 0.24 -43.82 16 17 Si 0.98 41.33 29.57 68.60 2.03 43.36 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 21 C 0.47 13.16 6.63 71.24 0.47 13.63 16 22 O -0.51 -15.66 11.34 21.98 0.25 -15.42 16 23 O -0.35 -8.12 9.79 -51.45 -0.50 -8.63 16 24 C 0.10 1.91 1.13 -10.79 -0.01 1.90 16 25 C -0.18 -3.52 8.37 71.98 0.60 -2.92 16 26 C -0.14 -1.63 8.85 71.98 0.64 -0.99 16 27 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16 28 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.10 2.03 8.11 -2.38 -0.02 2.01 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.41 13.76 5.86 -92.70 -0.54 13.22 16 32 H 0.12 4.33 6.44 -2.91 -0.02 4.31 16 33 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 34 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.10 5.51 6.60 -2.91 -0.02 5.49 16 36 H 0.29 13.99 8.29 -92.71 -0.77 13.22 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.46 5.89 -2.39 -0.01 1.44 16 40 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 1.36 5.89 -2.38 -0.01 1.35 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -66.93 367.37 5.26 -61.67 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: 0.47 Total: 38.91 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.04 Total: -17.44 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.96 Total: -72.37 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.31 Total: -54.12 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -66.93 5.26 -61.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601127947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.286 kcal (2) G-P(sol) polarization free energy of solvation -66.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds