Wall clock time and date at job start Tue Mar 31 2020 13:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47456 * 2 1 4 4 C 1.42897 * 114.00493 * 179.97438 * 3 2 1 5 5 H 1.09008 * 112.90532 * 21.74969 * 4 3 2 6 6 C 1.53777 * 113.61764 * 250.49570 * 4 3 2 7 7 C 1.53772 * 87.08324 * 220.01437 * 6 4 3 8 8 H 1.09009 * 113.61252 * 140.06614 * 7 6 4 9 9 N 1.46503 * 113.62188 * 270.88321 * 7 6 4 10 10 C 1.34770 * 119.99911 * 255.22519 * 9 7 6 11 11 O 1.21604 * 120.00268 * 0.26648 * 10 9 7 12 12 C 1.47430 * 119.99789 * 180.27231 * 10 9 7 13 13 C 1.39229 * 120.28108 * 355.57815 * 12 10 9 14 14 C 1.38225 * 120.09105 * 179.74882 * 13 12 10 15 15 C 1.38832 * 120.67569 * 0.55372 * 14 13 12 16 16 C 1.37599 * 120.56732 * 359.70052 * 15 14 13 17 17 C 1.40706 * 119.88339 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32464 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99503 * 141.36157 * 18 17 16 20 20 C 1.40273 * 120.00164 * 321.35648 * 18 17 16 21 21 N 1.30628 * 119.99940 * 173.98131 * 20 18 17 22 22 Si 1.86803 * 120.00078 * 353.98437 * 20 18 17 23 23 H 1.48500 * 109.46956 * 89.35499 * 22 20 18 24 24 H 1.48498 * 109.47064 * 209.35892 * 22 20 18 25 25 H 1.48501 * 109.46873 * 329.35570 * 22 20 18 26 26 C 1.53781 * 87.08117 * 25.43498 * 7 6 4 27 27 H 1.09004 * 113.61516 * 220.01741 * 26 7 6 28 28 O 1.42899 * 113.61595 * 89.11220 * 26 7 6 29 29 C 1.42897 * 114.00097 * 150.00033 * 28 26 7 30 30 H 1.09007 * 109.47100 * 59.99689 * 1 2 3 31 31 H 1.09001 * 109.47584 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47044 * 299.99878 * 1 2 3 33 33 H 1.09012 * 109.47073 * 240.00372 * 2 1 3 34 34 H 1.09001 * 109.47522 * 120.00242 * 2 1 3 35 35 H 1.09011 * 113.60958 * 105.46656 * 6 4 3 36 36 H 1.08996 * 113.61235 * 334.57106 * 6 4 3 37 37 H 0.96996 * 119.99431 * 75.48951 * 9 7 6 38 38 H 1.07994 * 119.95452 * 0.02562 * 13 12 10 39 39 H 1.07994 * 119.66222 * 180.28351 * 14 13 12 40 40 H 1.07989 * 119.71547 * 179.72175 * 15 14 13 41 41 H 1.07999 * 120.05442 * 180.02562 * 16 15 14 42 42 H 0.96993 * 120.00088 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.47640 * 180.02562 * 29 28 26 44 44 H 1.09001 * 109.47450 * 300.00263 * 29 28 26 45 45 H 1.09001 * 109.46980 * 59.99902 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9276 0.5638 -0.3712 6 6 4.0073 1.9779 1.3289 7 6 4.9915 2.8076 0.4877 8 1 5.1659 3.8090 0.8814 9 7 6.2326 2.0983 0.1671 10 6 7.3728 2.4086 0.8152 11 8 7.3704 3.2740 1.6695 12 6 8.6230 1.6990 0.4883 13 6 8.6149 0.6454 -0.4219 14 6 9.7903 -0.0138 -0.7294 15 6 10.9870 0.3552 -0.1302 16 6 11.0257 1.3890 0.7771 17 6 9.8442 2.0801 1.1033 18 6 9.8733 3.1404 2.0307 19 1 9.2656 4.0180 1.8666 20 6 10.6913 3.0561 3.1670 21 7 10.8091 4.0838 3.9647 22 14 11.6123 1.4742 3.5396 23 1 12.9399 1.5061 2.8750 24 1 11.7965 1.3426 5.0073 25 1 10.8327 0.3164 3.0328 26 6 3.9461 2.7601 -0.6391 27 1 4.3780 2.6180 -1.6298 28 8 3.0042 3.8338 -0.5918 29 6 2.4996 4.2211 -1.8714 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.4886 1.2041 1.9271 36 1 3.3056 2.5829 1.9030 37 1 6.2345 1.4080 -0.5143 38 1 7.6898 0.3458 -0.8917 39 1 9.7768 -0.8270 -1.4399 40 1 11.8953 -0.1734 -0.3785 41 1 11.9613 1.6693 1.2380 42 1 11.3744 4.0254 4.7507 43 1 1.7918 5.0411 -1.7499 44 1 3.3254 4.5453 -2.5047 45 1 1.9971 3.3726 -2.3357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601441560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:56 Heat of formation + Delta-G solvation = -96.393132 kcal Electronic energy + Delta-G solvation = -26948.251235 eV Core-core repulsion = 23124.007022 eV Total energy + Delta-G solvation = -3824.244213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58098 -40.33340 -38.69714 -38.12517 -36.83485 -35.54338 -33.94548 -32.29412 -31.93605 -31.23093 -27.78130 -27.32949 -26.01535 -25.62010 -24.00911 -23.63552 -22.90038 -21.33584 -20.67260 -19.41621 -18.75693 -18.08925 -17.39204 -17.14835 -16.77204 -16.55574 -16.54610 -15.95888 -15.81595 -15.71269 -15.37014 -15.21744 -14.75001 -14.50704 -14.38933 -14.04663 -13.90212 -13.72217 -13.62351 -13.27560 -12.98034 -12.71766 -12.68851 -12.53349 -12.42502 -12.20310 -12.11469 -12.00040 -11.86291 -11.62206 -11.59507 -11.08832 -10.73550 -10.41187 -10.27370 -9.99933 -9.52719 -9.40152 -8.79977 -6.47719 0.32962 0.83900 1.23618 1.36976 1.46039 1.98461 2.10452 2.22764 2.69384 2.71836 2.96957 3.36411 3.48868 3.55423 3.80312 3.95830 4.11651 4.18387 4.22130 4.24137 4.37491 4.42780 4.47638 4.53180 4.56694 4.60946 4.70300 4.79892 4.84049 4.87514 4.88418 4.91084 5.00392 5.04559 5.06480 5.29314 5.31073 5.45157 5.56376 5.67811 5.86107 5.95269 6.12460 6.26298 6.40225 6.46355 6.64432 6.78102 6.87239 7.59847 8.25928 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.003257 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.918589 B = 8593.574367 C = 8977.475679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.379 6.379 4 C 0.063 3.937 5 H 0.120 0.880 6 C -0.161 4.161 7 C 0.116 3.884 8 H 0.073 0.927 9 N -0.703 5.703 10 C 0.558 3.442 11 O -0.572 6.572 12 C -0.261 4.261 13 C -0.039 4.039 14 C -0.225 4.225 15 C -0.062 4.062 16 C -0.246 4.246 17 C 0.100 3.900 18 C -0.444 4.444 19 H 0.060 0.940 20 C 0.032 3.968 21 N -0.857 5.857 22 Si 0.970 3.030 23 H -0.246 1.246 24 H -0.283 1.283 25 H -0.248 1.248 26 C 0.078 3.922 27 H 0.104 0.896 28 O -0.378 6.378 29 C 0.029 3.971 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.411 0.589 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.292 0.708 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 -12.273 -13.324 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.298 6.298 4 C 0.005 3.995 5 H 0.138 0.862 6 C -0.201 4.201 7 C 0.010 3.990 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.350 3.650 11 O -0.452 6.452 12 C -0.266 4.266 13 C -0.057 4.057 14 C -0.244 4.244 15 C -0.080 4.080 16 C -0.265 4.265 17 C 0.096 3.904 18 C -0.474 4.474 19 H 0.078 0.922 20 C -0.181 4.181 21 N -0.484 5.484 22 Si 0.792 3.208 23 H -0.171 1.171 24 H -0.210 1.210 25 H -0.171 1.171 26 C 0.018 3.982 27 H 0.122 0.878 28 O -0.295 6.295 29 C -0.067 4.067 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.249 0.751 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.768 -11.210 -12.331 22.267 hybrid contribution 0.666 -0.086 0.469 0.819 sum -14.103 -11.296 -11.862 21.614 Atomic orbital electron populations 1.21743 0.92999 1.03235 1.02537 1.22767 0.96392 0.83268 1.00864 1.88014 1.19807 1.27461 1.94485 1.24264 0.82077 0.97821 0.95378 0.86235 1.23864 0.97828 1.00141 0.98233 1.21678 0.83491 0.96807 0.97072 0.90887 1.45264 1.06591 1.41386 1.42566 1.18584 0.83970 0.81988 0.80418 1.90789 1.86090 1.34193 1.34109 1.19769 0.91773 1.04425 1.10593 1.21254 0.99145 0.92102 0.93226 1.20991 0.91997 1.04921 1.06467 1.21282 0.99128 0.93981 0.93596 1.21294 0.96528 1.03286 1.05346 1.17818 0.91350 0.90218 0.90986 1.19719 1.19723 1.02918 1.05023 0.92174 1.27087 0.94740 1.00968 0.95277 1.69618 1.33044 1.32695 1.13050 0.85469 0.79688 0.78851 0.76765 1.17087 1.21016 1.17110 1.23696 0.88870 0.87161 0.98446 0.87837 1.87861 1.59200 1.51335 1.31134 1.23003 0.98971 1.00701 0.84009 0.92030 0.89218 0.92892 0.91739 0.93297 0.91354 0.89541 0.75091 0.83771 0.83456 0.84475 0.87986 0.89808 0.88515 0.93192 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.04 0.70 6.51 71.98 0.47 1.16 16 3 O -0.38 -8.58 9.97 -134.58 -1.34 -9.93 16 4 C 0.06 1.38 4.13 31.12 0.13 1.51 16 5 H 0.12 1.92 7.90 -2.38 -0.02 1.91 16 6 C -0.16 -4.65 7.64 31.12 0.24 -4.41 16 7 C 0.12 3.71 4.12 45.51 0.19 3.90 16 8 H 0.07 2.94 7.53 -2.38 -0.02 2.92 16 9 N -0.70 -22.85 5.22 -443.30 -2.31 -25.16 16 10 C 0.56 25.52 7.73 86.67 0.67 26.19 16 11 O -0.57 -32.94 13.29 -4.04 -0.05 -33.00 16 12 C -0.26 -11.72 5.92 -19.70 -0.12 -11.84 16 13 C -0.04 -1.29 9.52 22.50 0.21 -1.07 16 14 C -0.23 -6.97 10.03 22.41 0.22 -6.75 16 15 C -0.06 -2.18 10.01 22.26 0.22 -1.96 16 16 C -0.25 -11.02 6.96 22.72 0.16 -10.86 16 17 C 0.10 5.19 5.03 -21.11 -0.11 5.09 16 18 C -0.44 -26.90 8.09 23.42 0.19 -26.71 16 19 H 0.06 4.18 6.33 -2.91 -0.02 4.16 16 20 C 0.03 1.83 5.50 85.37 0.47 2.30 16 21 N -0.86 -51.17 13.92 21.88 0.30 -50.87 16 22 Si 0.97 44.13 24.49 68.60 1.68 45.81 16 23 H -0.25 -10.15 6.70 99.48 0.67 -9.48 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.25 -11.19 6.70 99.48 0.67 -10.53 16 26 C 0.08 1.89 4.05 31.12 0.13 2.02 16 27 H 0.10 1.96 7.87 -2.39 -0.02 1.94 16 28 O -0.38 -10.16 10.25 -134.58 -1.38 -11.53 16 29 C 0.03 0.53 10.85 113.37 1.23 1.76 16 30 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.41 9.67 6.76 -92.71 -0.63 9.05 16 38 H 0.14 3.32 6.42 -2.91 -0.02 3.30 16 39 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.14 3.80 8.06 -2.92 -0.02 3.78 16 41 H 0.10 4.59 4.93 -2.91 -0.01 4.57 16 42 H 0.29 15.59 8.29 -92.71 -0.77 14.82 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -77.98 367.59 2.24 -75.74 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.30 Total: 29.86 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.04 Total: -20.92 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.01 Total: -76.03 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -2.77 Total: -54.46 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.68 Total: 45.81 kcal Total: -77.98 2.24 -75.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.652 kcal (2) G-P(sol) polarization free energy of solvation -77.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds