Wall clock time and date at job start Tue Mar 31 2020 13:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47179 * 2 1 4 4 C 1.42896 * 114.00120 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.90693 * 18.75240 * 4 3 2 6 6 C 1.53780 * 113.61812 * 247.49642 * 4 3 2 7 7 C 1.53775 * 87.08364 * 220.01952 * 6 4 3 8 8 H 1.09001 * 113.61688 * 270.88470 * 7 6 4 9 9 N 1.46510 * 113.69148 * 139.99002 * 7 6 4 10 10 C 1.34773 * 119.99683 * 107.46429 * 9 7 6 11 11 O 1.21605 * 120.00343 * 359.97438 * 10 9 7 12 12 C 1.47434 * 119.99724 * 180.02562 * 10 9 7 13 13 C 1.39224 * 120.28484 * 356.35079 * 12 10 9 14 14 C 1.38220 * 120.09626 * 179.72054 * 13 12 10 15 15 C 1.38827 * 120.67221 * 0.55957 * 14 13 12 16 16 C 1.37607 * 120.56983 * 359.71668 * 15 14 13 17 17 C 1.40697 * 119.88227 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.33009 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00591 * 215.14562 * 18 17 16 20 20 C 1.40275 * 119.99804 * 35.14119 * 18 17 16 21 21 N 1.30624 * 119.99950 * 9.44634 * 20 18 17 22 22 Si 1.86802 * 120.00243 * 189.44388 * 20 18 17 23 23 H 1.48503 * 109.47149 * 59.99863 * 22 20 18 24 24 H 1.48493 * 109.47359 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46856 * 300.00210 * 22 20 18 26 26 C 1.53778 * 87.08423 * 25.43347 * 7 6 4 27 27 H 1.09001 * 113.62003 * 219.93597 * 26 7 6 28 28 O 1.42905 * 113.61784 * 89.11375 * 26 7 6 29 29 C 1.42895 * 114.00063 * 150.00546 * 28 26 7 30 30 H 1.09000 * 109.46824 * 60.00270 * 1 2 3 31 31 H 1.09004 * 109.46948 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47080 * 300.00083 * 1 2 3 33 33 H 1.09006 * 109.47330 * 240.00040 * 2 1 3 34 34 H 1.09004 * 109.47127 * 120.00108 * 2 1 3 35 35 H 1.08999 * 113.61662 * 105.46762 * 6 4 3 36 36 H 1.09001 * 113.68832 * 334.58195 * 6 4 3 37 37 H 0.96996 * 119.99772 * 287.46584 * 9 7 6 38 38 H 1.08007 * 119.94951 * 359.97438 * 13 12 10 39 39 H 1.07995 * 119.66404 * 180.29732 * 14 13 12 40 40 H 1.07997 * 119.71755 * 179.74357 * 15 14 13 41 41 H 1.08003 * 120.05640 * 179.97438 * 16 15 14 42 42 H 0.97005 * 120.00020 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.47017 * 180.02562 * 29 28 26 44 44 H 1.08993 * 109.47379 * 60.00137 * 29 28 26 45 45 H 1.09010 * 109.46740 * 299.99896 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9290 0.5458 -0.3218 6 6 4.0019 2.0465 1.3024 7 6 4.9896 2.8314 0.4232 8 1 5.9140 2.2920 0.2163 9 7 5.2220 4.2040 0.8799 10 6 6.3949 4.5328 1.4565 11 8 7.2601 3.6902 1.5982 12 6 6.6284 5.9139 1.9166 13 6 5.6724 6.9004 1.6904 14 6 5.8929 8.1927 2.1285 15 6 7.0690 8.5265 2.7863 16 6 8.0349 7.5746 3.0194 17 6 7.8328 6.2506 2.5884 18 6 8.8152 5.2683 2.8226 19 1 8.9833 4.4883 2.0947 20 6 9.5752 5.3034 4.0011 21 7 9.2531 6.1280 4.9616 22 14 11.0478 4.1710 4.1970 23 1 12.0356 4.4534 3.1246 24 1 11.6763 4.4010 5.5225 25 1 10.6020 2.7579 4.0996 26 6 3.9490 2.7251 -0.7039 27 1 4.3850 2.5330 -1.6843 28 8 3.0070 3.7997 -0.7166 29 6 2.5076 4.1196 -2.0167 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 4.4807 1.3052 1.9422 36 1 3.2988 2.6807 1.8425 37 1 4.5316 4.8760 0.7672 38 1 4.7554 6.6547 1.1755 39 1 5.1445 8.9514 1.9536 40 1 7.2270 9.5419 3.1184 41 1 8.9470 7.8435 3.5316 42 1 9.7784 6.1521 5.7767 43 1 1.7994 4.9447 -1.9410 44 1 2.0069 3.2481 -2.4382 45 1 3.3362 4.4105 -2.6626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601441563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:04 Heat of formation + Delta-G solvation = -99.278667 kcal Electronic energy + Delta-G solvation = -26962.087964 eV Core-core repulsion = 23137.718625 eV Total energy + Delta-G solvation = -3824.369339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40945 -40.19347 -38.51004 -38.07780 -36.56567 -35.60263 -34.00533 -31.89842 -31.66803 -31.03927 -27.74453 -27.38995 -25.89864 -25.53339 -23.79884 -23.47073 -22.64050 -21.15225 -20.83010 -19.37862 -18.40287 -18.14849 -17.20831 -17.09222 -16.67808 -16.64648 -16.21888 -15.97992 -15.79408 -15.46400 -15.16324 -14.94065 -14.69870 -14.48526 -14.35286 -13.99370 -13.77765 -13.47802 -13.34604 -12.94750 -12.84132 -12.77526 -12.59493 -12.48839 -12.33363 -12.32584 -12.25106 -11.93568 -11.82802 -11.69657 -11.46538 -11.11966 -10.75593 -10.21111 -10.18872 -9.81969 -9.37634 -9.20380 -8.66165 -6.35285 0.52864 1.03118 1.34211 1.46086 1.52038 2.21708 2.23305 2.35864 2.76953 2.84086 2.92369 3.43953 3.57182 3.72374 3.87497 3.99818 4.17527 4.22062 4.27309 4.36067 4.39799 4.48092 4.52583 4.57215 4.61054 4.64364 4.76942 4.88108 4.89171 4.91997 5.02314 5.05932 5.08859 5.14749 5.26613 5.29543 5.35491 5.63038 5.69075 5.84013 6.06788 6.11933 6.17875 6.36323 6.43121 6.67632 6.82936 6.94460 7.03923 7.69168 8.31876 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.003414 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.227243 B = 8199.259258 C = 9426.022929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.377 6.377 4 C 0.061 3.939 5 H 0.121 0.879 6 C -0.164 4.164 7 C 0.117 3.883 8 H 0.112 0.888 9 N -0.709 5.709 10 C 0.561 3.439 11 O -0.578 6.578 12 C -0.279 4.279 13 C -0.054 4.054 14 C -0.236 4.236 15 C -0.092 4.092 16 C -0.176 4.176 17 C 0.116 3.884 18 C -0.461 4.461 19 H 0.088 0.912 20 C 0.031 3.969 21 N -0.825 5.825 22 Si 0.980 3.020 23 H -0.257 1.257 24 H -0.261 1.261 25 H -0.272 1.272 26 C 0.073 3.927 27 H 0.102 0.898 28 O -0.373 6.373 29 C 0.031 3.969 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.289 0.711 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 -8.514 -11.485 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.296 6.296 4 C 0.002 3.998 5 H 0.138 0.862 6 C -0.203 4.203 7 C 0.010 3.990 8 H 0.130 0.870 9 N -0.362 5.362 10 C 0.354 3.646 11 O -0.460 6.460 12 C -0.284 4.284 13 C -0.073 4.073 14 C -0.255 4.255 15 C -0.111 4.111 16 C -0.195 4.195 17 C 0.112 3.888 18 C -0.490 4.490 19 H 0.106 0.894 20 C -0.184 4.184 21 N -0.451 5.451 22 Si 0.801 3.199 23 H -0.181 1.181 24 H -0.185 1.185 25 H -0.197 1.197 26 C 0.013 3.987 27 H 0.120 0.880 28 O -0.291 6.291 29 C -0.065 4.065 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.245 0.755 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.069 0.931 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.410 -8.774 -10.992 19.433 hybrid contribution 0.661 -0.345 0.354 0.825 sum -12.749 -9.119 -10.638 18.943 Atomic orbital electron populations 1.21741 0.93038 1.03210 1.02520 1.22768 0.96357 0.83314 1.00807 1.88013 1.19701 1.27379 1.94482 1.24031 0.82136 0.98157 0.95518 0.86181 1.23899 0.98273 0.99900 0.98273 1.22551 0.97212 0.84032 0.95157 0.86980 1.45506 1.16883 1.11598 1.62233 1.18459 0.81356 0.88282 0.76481 1.90608 1.45289 1.52422 1.57700 1.19857 0.98165 0.93104 1.17307 1.21049 0.96575 0.92978 0.96698 1.20787 0.99586 0.96714 1.08433 1.21177 0.94112 0.98506 0.97281 1.21283 1.00090 0.92861 1.05300 1.17868 0.90263 0.92792 0.87899 1.20226 1.14366 1.10381 1.04062 0.89390 1.26844 0.99912 0.96940 0.94720 1.69746 1.36935 1.33101 1.05314 0.85292 0.77407 0.78477 0.78715 1.18103 1.18478 1.19691 1.23900 0.88898 0.87368 0.98521 0.88029 1.87807 1.59495 1.51172 1.30646 1.22964 0.98948 1.01141 0.83471 0.92084 0.89225 0.92896 0.91887 0.93215 0.91214 0.90287 0.75503 0.85630 0.85070 0.86145 0.88287 0.90060 0.88524 0.93064 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.71 6.50 71.98 0.47 1.18 16 3 O -0.38 -8.58 9.97 -134.58 -1.34 -9.92 16 4 C 0.06 1.32 4.26 31.12 0.13 1.46 16 5 H 0.12 1.96 7.87 -2.39 -0.02 1.94 16 6 C -0.16 -4.65 7.65 31.12 0.24 -4.41 16 7 C 0.12 3.59 4.19 45.51 0.19 3.78 16 8 H 0.11 3.65 7.46 -2.39 -0.02 3.63 16 9 N -0.71 -26.40 5.28 -443.29 -2.34 -28.74 16 10 C 0.56 27.04 7.73 86.67 0.67 27.71 16 11 O -0.58 -31.71 13.12 -4.05 -0.05 -31.76 16 12 C -0.28 -14.15 5.92 -19.70 -0.12 -14.27 16 13 C -0.05 -2.30 9.52 22.50 0.21 -2.09 16 14 C -0.24 -9.63 10.03 22.41 0.22 -9.40 16 15 C -0.09 -4.11 10.01 22.26 0.22 -3.89 16 16 C -0.18 -9.29 8.62 22.72 0.20 -9.10 16 17 C 0.12 6.53 5.49 -21.11 -0.12 6.41 16 18 C -0.46 -27.02 7.77 23.41 0.18 -26.84 16 19 H 0.09 5.38 5.75 -2.91 -0.02 5.37 16 20 C 0.03 1.65 5.24 85.37 0.45 2.10 16 21 N -0.82 -44.95 11.23 21.88 0.25 -44.71 16 22 Si 0.98 42.15 29.57 68.60 2.03 44.18 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.07 1.71 4.26 31.12 0.13 1.85 16 27 H 0.10 1.91 7.87 -2.39 -0.02 1.89 16 28 O -0.37 -9.33 9.18 -134.58 -1.23 -10.57 16 29 C 0.03 0.54 10.85 113.37 1.23 1.77 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.41 13.86 5.84 -92.71 -0.54 13.32 16 38 H 0.13 4.37 6.41 -2.91 -0.02 4.35 16 39 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.10 5.43 6.68 -2.91 -0.02 5.41 16 42 H 0.29 14.24 8.29 -92.70 -0.77 13.47 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -70.44 371.68 2.82 -67.62 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: 0.46 Total: 38.94 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 5.06 Total: -25.04 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -2.09 Total: -73.45 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -2.63 Total: -52.25 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -70.44 2.82 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.656 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds