Wall clock time and date at job start Tue Mar 31 2020 12:45:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42899 * 109.46800 * 2 1
4 4 C 1.35970 * 116.99688 * 180.02562 * 3 2 1
5 5 C 1.38729 * 119.98410 * 179.97438 * 4 3 2
6 6 C 1.38088 * 120.01260 * 180.02562 * 5 4 3
7 7 C 1.38852 * 119.98656 * 359.97438 * 6 5 4
8 8 N 1.40115 * 120.01451 * 180.02562 * 7 6 5
9 9 C 1.46500 * 119.99695 * 292.83253 * 8 7 6
10 10 C 1.50704 * 109.47157 * 270.00106 * 9 8 7
11 11 H 1.08001 * 119.99620 * 0.02562 * 10 9 8
12 12 C 1.37877 * 119.99654 * 180.02562 * 10 9 8
13 13 N 1.31511 * 119.99328 * 179.97438 * 12 10 9
14 14 Si 1.86797 * 120.00475 * 0.02562 * 12 10 9
15 15 H 1.48492 * 109.47285 * 89.99694 * 14 12 10
16 16 H 1.48499 * 109.47011 * 210.00261 * 14 12 10
17 17 H 1.48502 * 109.46913 * 329.99831 * 14 12 10
18 18 C 1.34771 * 119.99850 * 112.82879 * 8 7 6
19 19 O 1.21291 * 120.00366 * 354.89480 * 18 8 7
20 20 C 1.50703 * 119.99564 * 174.88413 * 18 8 7
21 21 H 1.08990 * 112.85241 * 311.20371 * 20 18 8
22 22 C 1.53783 * 113.61009 * 82.51083 * 20 18 8
23 23 C 1.54052 * 87.07800 * 139.97624 * 22 20 18
24 24 H 1.08998 * 113.61668 * 89.06988 * 23 22 20
25 25 O 1.42901 * 113.69594 * 220.05191 * 23 22 20
26 26 C 1.53782 * 113.61012 * 180.02562 * 20 18 8
27 27 C 1.38843 * 119.96913 * 0.27832 * 7 6 5
28 28 C 1.38090 * 119.98524 * 359.44449 * 27 7 6
29 29 H 1.08995 * 109.47308 * 59.99869 * 1 2 3
30 30 H 1.08999 * 109.46795 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.46874 * 300.00043 * 1 2 3
32 32 H 1.09000 * 109.46874 * 239.99957 * 2 1 3
33 33 H 1.09001 * 109.46900 * 119.99933 * 2 1 3
34 34 H 1.07997 * 119.99256 * 0.03781 * 5 4 3
35 35 H 1.08002 * 120.00679 * 180.02562 * 6 5 4
36 36 H 1.09000 * 109.47457 * 30.00052 * 9 8 7
37 37 H 1.08999 * 109.46773 * 149.99831 * 9 8 7
38 38 H 0.97000 * 120.00122 * 179.97438 * 13 12 10
39 39 H 1.09004 * 113.61108 * 254.52347 * 22 20 18
40 40 H 1.08998 * 113.62040 * 25.34519 * 22 20 18
41 41 H 0.96694 * 114.00060 * 277.42002 * 25 23 22
42 42 H 1.08991 * 113.61900 * 334.57173 * 26 20 18
43 43 H 1.09007 * 113.61119 * 105.39418 * 26 20 18
44 44 H 1.08001 * 120.00639 * 179.70157 * 27 7 6
45 45 H 1.07994 * 119.99089 * 180.27416 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3543 1.5254 -0.0005
5 6 3.8842 2.8076 -0.0011
6 6 5.2530 2.9892 -0.0022
7 6 6.0992 1.8882 -0.0022
8 7 7.4882 2.0718 -0.0027
9 6 8.1494 2.6555 -1.1725
10 6 8.5475 1.5573 -2.1247
11 1 8.3294 0.5276 -1.8828
12 6 9.1901 1.8672 -3.3045
13 7 9.5380 0.9088 -4.1351
14 14 9.5680 3.6482 -3.7224
15 1 10.9058 4.0089 -3.1882
16 1 9.5602 3.8229 -5.1971
17 1 8.5383 4.5286 -3.1142
18 6 8.2160 1.7115 1.0728
19 8 7.6607 1.3150 2.0757
20 6 9.7197 1.8011 1.0294
21 1 10.1453 1.3448 0.1358
22 6 10.2615 3.2104 1.3215
23 6 11.3761 2.5273 2.1366
24 1 12.2547 2.2702 1.5449
25 8 11.7021 3.2104 3.3487
26 6 10.4013 1.3537 2.3334
27 6 5.5681 0.6054 -0.0069
28 6 4.1991 0.4251 0.0000
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.2259 3.6638 -0.0005
35 1 5.6655 3.9873 -0.0022
36 1 7.4646 3.3399 -1.6732
37 1 9.0383 3.1998 -0.8535
38 1 9.9897 1.1267 -4.9653
39 1 10.6249 3.7307 0.4353
40 1 9.5891 3.8204 1.9246
41 1 12.3148 3.9491 3.2312
42 1 9.7677 1.4555 3.2144
43 1 10.8763 0.3751 2.2643
44 1 6.2257 -0.2514 -0.0118
45 1 3.7860 -0.5727 0.0008
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602090585.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:45:40
Heat of formation + Delta-G solvation = -71.346612 kcal
Electronic energy + Delta-G solvation = -27065.074669 eV
Core-core repulsion = 23241.916555 eV
Total energy + Delta-G solvation = -3823.158114 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.41643 -39.68292 -38.25756 -36.87495 -34.93010 -34.59275 -32.61336 -31.79498
-30.65975 -29.11200 -27.57429 -25.58521 -25.47047 -24.00480 -22.65745 -22.24306
-21.40621 -19.86120 -18.66169 -18.10384 -17.51114 -17.07912 -16.64526 -16.07144
-15.99159 -15.63748 -15.28053 -14.51512 -14.32812 -14.16035 -13.85932 -13.47425
-13.28513 -13.17106 -13.09792 -12.74367 -12.55536 -12.46478 -12.19259 -12.13330
-11.90080 -11.70650 -11.68491 -11.24338 -11.11406 -10.84512 -10.77188 -10.65662
-10.55636 -10.35068 -10.32712 -9.77341 -9.68849 -9.15197 -8.78227 -8.68085
-8.33685 -7.46042 -6.27085 -4.28878 1.65105 1.73276 3.11307 3.16054
3.20811 3.21913 3.28808 3.65982 4.08054 4.20997 4.36473 4.69076
4.83685 4.86835 4.87989 5.01911 5.04255 5.08522 5.09628 5.17909
5.20999 5.39057 5.46610 5.64274 5.66414 5.68588 5.83274 5.88410
5.91771 5.92647 6.01573 6.14812 6.15787 6.28129 6.30931 6.49604
6.56970 6.62482 6.64381 6.87716 6.93514 7.35320 7.42261 7.65591
7.71302 7.99305 8.31993 8.75794 8.85156 9.31502 10.85437
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.010501 B = 0.004297 C = 0.003359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2665.880341 B = 6515.319102 C = 8334.465940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.054 3.946
3 O -0.320 6.320
4 C 0.115 3.885
5 C -0.143 4.143
6 C -0.087 4.087
7 C 0.137 3.863
8 N -0.551 5.551
9 C 0.209 3.791
10 C -0.540 4.540
11 H 0.079 0.921
12 C 0.079 3.921
13 N -0.889 5.889
14 Si 0.868 3.132
15 H -0.272 1.272
16 H -0.282 1.282
17 H -0.264 1.264
18 C 0.536 3.464
19 O -0.553 6.553
20 C -0.128 4.128
21 H 0.133 0.867
22 C -0.152 4.152
23 C 0.076 3.924
24 H 0.086 0.914
25 O -0.560 6.560
26 C -0.107 4.107
27 C -0.062 4.062
28 C -0.197 4.197
29 H 0.065 0.935
30 H 0.075 0.925
31 H 0.064 0.936
32 H 0.061 0.939
33 H 0.060 0.940
34 H 0.129 0.871
35 H 0.128 0.872
36 H 0.035 0.965
37 H 0.037 0.963
38 H 0.267 0.733
39 H 0.078 0.922
40 H 0.088 0.912
41 H 0.374 0.626
42 H 0.099 0.901
43 H 0.075 0.925
44 H 0.124 0.876
45 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.191 2.798 7.914 10.430
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.022 4.022
3 O -0.234 6.234
4 C 0.070 3.930
5 C -0.162 4.162
6 C -0.107 4.107
7 C 0.046 3.954
8 N -0.278 5.278
9 C 0.089 3.911
10 C -0.579 4.579
11 H 0.097 0.903
12 C -0.125 4.125
13 N -0.526 5.526
14 Si 0.694 3.306
15 H -0.198 1.198
16 H -0.208 1.208
17 H -0.188 1.188
18 C 0.325 3.675
19 O -0.432 6.432
20 C -0.148 4.148
21 H 0.151 0.849
22 C -0.190 4.190
23 C 0.017 3.983
24 H 0.104 0.896
25 O -0.365 6.365
26 C -0.145 4.145
27 C -0.082 4.082
28 C -0.216 4.216
29 H 0.084 0.916
30 H 0.094 0.906
31 H 0.083 0.917
32 H 0.080 0.920
33 H 0.078 0.922
34 H 0.147 0.853
35 H 0.146 0.854
36 H 0.053 0.947
37 H 0.055 0.945
38 H 0.077 0.923
39 H 0.097 0.903
40 H 0.107 0.893
41 H 0.221 0.779
42 H 0.118 0.882
43 H 0.094 0.906
44 H 0.142 0.858
45 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -6.920 2.248 8.488 11.180
hybrid contribution 0.776 0.970 -1.056 1.631
sum -6.144 3.219 7.432 10.166
Atomic orbital electron populations
1.21762 0.93050 1.02619 1.03332 1.22734 0.95531 0.82439 1.01479
1.86030 1.19338 1.28859 1.89203 1.18875 0.81852 0.94122 0.98161
1.20135 0.94406 0.94648 1.07051 1.20980 0.92108 0.98576 0.99045
1.17451 0.83632 0.92609 1.01668 1.45561 1.03806 1.61544 1.16922
1.19959 0.93034 0.94952 0.83122 1.21322 1.38941 0.94525 1.03067
0.90303 1.24837 0.94893 0.97051 0.95747 1.69881 1.39728 1.32139
1.10869 0.86970 0.79455 0.85678 0.78467 1.19761 1.20782 1.18817
1.20298 0.89154 0.76162 0.81883 1.90631 1.73159 1.47463 1.31913
1.22484 0.92262 0.99096 1.01008 0.84881 1.23637 0.98781 0.95918
1.00666 1.23420 0.95454 0.93894 0.85517 0.89620 1.86538 1.68511
1.49250 1.32192 1.22957 0.96537 0.97058 0.97948 1.21031 0.94225
0.96878 0.96029 1.21027 0.93730 0.97834 1.08996 0.91606 0.90576
0.91682 0.92026 0.92156 0.85317 0.85429 0.94674 0.94539 0.92306
0.90329 0.89315 0.77948 0.88242 0.90582 0.85757 0.85642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16
2 C 0.05 0.59 5.46 37.16 0.20 0.79 16
3 O -0.32 -4.62 10.14 -19.65 -0.20 -4.82 16
4 C 0.11 1.86 6.69 -39.22 -0.26 1.60 16
5 C -0.14 -2.31 9.98 -39.45 -0.39 -2.70 16
6 C -0.09 -1.55 9.65 -39.41 -0.38 -1.93 16
7 C 0.14 2.77 4.78 -83.62 -0.40 2.37 16
8 N -0.55 -11.51 2.51 -114.69 -0.29 -11.80 16
9 C 0.21 4.56 3.89 -5.19 -0.02 4.54 16
10 C -0.54 -13.87 9.47 -34.44 -0.33 -14.20 16
11 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16
12 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16
13 N -0.89 -25.22 13.96 55.43 0.77 -24.45 16
14 Si 0.87 19.25 27.47 -169.99 -4.67 14.58 16
15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
17 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16
18 C 0.54 10.99 7.05 -10.99 -0.08 10.92 16
19 O -0.55 -12.49 15.65 5.55 0.09 -12.40 16
20 C -0.13 -2.23 2.87 -90.96 -0.26 -2.49 16
21 H 0.13 2.47 7.53 -51.93 -0.39 2.07 16
22 C -0.15 -2.26 6.58 -25.78 -0.17 -2.43 16
23 C 0.08 1.02 5.23 -25.75 -0.13 0.89 16
24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
25 O -0.56 -7.25 13.68 -35.23 -0.48 -7.73 16
26 C -0.11 -1.68 7.23 -25.90 -0.19 -1.87 16
27 C -0.06 -1.20 9.53 -39.41 -0.38 -1.57 16
28 C -0.20 -3.26 9.03 -39.46 -0.36 -3.62 16
29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16
33 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16
34 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16
35 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16
36 H 0.04 0.77 6.90 -51.93 -0.36 0.42 16
37 H 0.04 0.74 5.09 -51.93 -0.26 0.48 16
38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16
39 H 0.08 1.11 7.57 -51.93 -0.39 0.71 16
40 H 0.09 1.37 8.09 -51.93 -0.42 0.94 16
41 H 0.37 3.02 9.12 45.56 0.42 3.43 16
42 H 0.10 1.73 7.43 -51.93 -0.39 1.35 16
43 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16
44 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16
45 H 0.13 1.74 6.29 -52.49 -0.33 1.41 16
LS Contribution 371.93 15.07 5.60 5.60
Total: -1.00 -31.84 371.93 -7.92 -39.77
By element:
Atomic # 1 Polarization: 15.77 SS G_CDS: -5.90 Total: 9.87 kcal
Atomic # 6 Polarization: -5.76 SS G_CDS: -2.86 Total: -8.62 kcal
Atomic # 7 Polarization: -36.73 SS G_CDS: 0.49 Total: -36.25 kcal
Atomic # 8 Polarization: -24.36 SS G_CDS: -0.59 Total: -24.96 kcal
Atomic # 14 Polarization: 19.25 SS G_CDS: -4.67 Total: 14.58 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -31.84 -7.92 -39.77 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602090585.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.581 kcal
(2) G-P(sol) polarization free energy of solvation -31.841 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.422 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds