Wall clock time and date at job start Tue Mar 31 2020 12:45:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42899 * 109.46800 * 2 1
4 4 C 1.35970 * 116.99688 * 180.02562 * 3 2 1
5 5 C 1.38729 * 119.98410 * 179.97438 * 4 3 2
6 6 C 1.38088 * 120.01260 * 180.02562 * 5 4 3
7 7 C 1.38852 * 119.98656 * 359.97438 * 6 5 4
8 8 N 1.40115 * 120.01451 * 180.02562 * 7 6 5
9 9 C 1.46500 * 119.99695 * 292.83253 * 8 7 6
10 10 C 1.50704 * 109.47157 * 270.00106 * 9 8 7
11 11 H 1.08001 * 119.99620 * 0.02562 * 10 9 8
12 12 C 1.37877 * 119.99654 * 180.02562 * 10 9 8
13 13 N 1.31511 * 119.99328 * 179.97438 * 12 10 9
14 14 Si 1.86797 * 120.00475 * 0.02562 * 12 10 9
15 15 H 1.48492 * 109.47285 * 89.99694 * 14 12 10
16 16 H 1.48499 * 109.47011 * 210.00261 * 14 12 10
17 17 H 1.48502 * 109.46913 * 329.99831 * 14 12 10
18 18 C 1.34771 * 119.99850 * 112.82879 * 8 7 6
19 19 O 1.21291 * 120.00366 * 354.89480 * 18 8 7
20 20 C 1.50703 * 119.99564 * 174.88413 * 18 8 7
21 21 H 1.08990 * 112.85241 * 311.20371 * 20 18 8
22 22 C 1.53783 * 113.61009 * 82.51083 * 20 18 8
23 23 C 1.54052 * 87.07800 * 139.97624 * 22 20 18
24 24 H 1.08998 * 113.61668 * 89.06988 * 23 22 20
25 25 O 1.42901 * 113.69594 * 220.05191 * 23 22 20
26 26 C 1.53782 * 113.61012 * 180.02562 * 20 18 8
27 27 C 1.38843 * 119.96913 * 0.27832 * 7 6 5
28 28 C 1.38090 * 119.98524 * 359.44449 * 27 7 6
29 29 H 1.08995 * 109.47308 * 59.99869 * 1 2 3
30 30 H 1.08999 * 109.46795 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.46874 * 300.00043 * 1 2 3
32 32 H 1.09000 * 109.46874 * 239.99957 * 2 1 3
33 33 H 1.09001 * 109.46900 * 119.99933 * 2 1 3
34 34 H 1.07997 * 119.99256 * 0.03781 * 5 4 3
35 35 H 1.08002 * 120.00679 * 180.02562 * 6 5 4
36 36 H 1.09000 * 109.47457 * 30.00052 * 9 8 7
37 37 H 1.08999 * 109.46773 * 149.99831 * 9 8 7
38 38 H 0.97000 * 120.00122 * 179.97438 * 13 12 10
39 39 H 1.09004 * 113.61108 * 254.52347 * 22 20 18
40 40 H 1.08998 * 113.62040 * 25.34519 * 22 20 18
41 41 H 0.96694 * 114.00060 * 277.42002 * 25 23 22
42 42 H 1.08991 * 113.61900 * 334.57173 * 26 20 18
43 43 H 1.09007 * 113.61119 * 105.39418 * 26 20 18
44 44 H 1.08001 * 120.00639 * 179.70157 * 27 7 6
45 45 H 1.07994 * 119.99089 * 180.27416 * 28 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3543 1.5254 -0.0005
5 6 3.8842 2.8076 -0.0011
6 6 5.2530 2.9892 -0.0022
7 6 6.0992 1.8882 -0.0022
8 7 7.4882 2.0718 -0.0027
9 6 8.1494 2.6555 -1.1725
10 6 8.5475 1.5573 -2.1247
11 1 8.3294 0.5276 -1.8828
12 6 9.1901 1.8672 -3.3045
13 7 9.5380 0.9088 -4.1351
14 14 9.5680 3.6482 -3.7224
15 1 10.9058 4.0089 -3.1882
16 1 9.5602 3.8229 -5.1971
17 1 8.5383 4.5286 -3.1142
18 6 8.2160 1.7115 1.0728
19 8 7.6607 1.3150 2.0757
20 6 9.7197 1.8011 1.0294
21 1 10.1453 1.3448 0.1358
22 6 10.2615 3.2104 1.3215
23 6 11.3761 2.5273 2.1366
24 1 12.2547 2.2702 1.5449
25 8 11.7021 3.2104 3.3487
26 6 10.4013 1.3537 2.3334
27 6 5.5681 0.6054 -0.0069
28 6 4.1991 0.4251 0.0000
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.2259 3.6638 -0.0005
35 1 5.6655 3.9873 -0.0022
36 1 7.4646 3.3399 -1.6732
37 1 9.0383 3.1998 -0.8535
38 1 9.9897 1.1267 -4.9653
39 1 10.6249 3.7307 0.4353
40 1 9.5891 3.8204 1.9246
41 1 12.3148 3.9491 3.2312
42 1 9.7677 1.4555 3.2144
43 1 10.8763 0.3751 2.2643
44 1 6.2257 -0.2514 -0.0118
45 1 3.7860 -0.5727 0.0008
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000602090585.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:45:39
Heat of formation + Delta-G solvation = -92.533870 kcal
Electronic energy + Delta-G solvation = -27065.993418 eV
Core-core repulsion = 23241.916555 eV
Total energy + Delta-G solvation = -3824.076863 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.86377 -40.92929 -39.50226 -38.22519 -36.56310 -35.71227 -34.53828 -32.78411
-31.95880 -30.64649 -29.24547 -26.88600 -26.71643 -25.14902 -24.33156 -23.64382
-22.58334 -21.14356 -20.04824 -19.31481 -19.04176 -18.75774 -18.15520 -17.45217
-17.06169 -16.98567 -16.50126 -16.19712 -15.73825 -15.60460 -15.20925 -14.71600
-14.54478 -14.44223 -14.35312 -14.27329 -13.95646 -13.68139 -13.53380 -13.34942
-13.23865 -12.99234 -12.87949 -12.65217 -12.49872 -12.39570 -12.15387 -12.02068
-11.82842 -11.70324 -11.62293 -11.52519 -10.97017 -10.80142 -10.58211 -10.05343
-9.90936 -8.91086 -8.29557 -6.37451 0.28457 0.32858 1.39352 1.42837
1.51611 1.58266 2.10850 2.25503 2.34783 2.69079 3.04218 3.30341
3.45734 3.63283 3.75500 3.80669 3.84671 3.93595 4.05126 4.13151
4.16001 4.25615 4.33733 4.37138 4.50330 4.59562 4.62870 4.71195
4.73836 4.82963 4.84288 4.92767 4.94956 4.96034 5.03802 5.07699
5.17963 5.29951 5.35103 5.38514 5.47811 5.57366 5.91057 6.16557
6.40821 6.50608 6.66772 6.96641 7.19831 7.30643 8.86625
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.010501 B = 0.004297 C = 0.003359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2665.880341 B = 6515.319102 C = 8334.465940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.041 3.959
3 O -0.323 6.323
4 C 0.118 3.882
5 C -0.140 4.140
6 C -0.091 4.091
7 C 0.099 3.901
8 N -0.553 5.553
9 C 0.220 3.780
10 C -0.539 4.539
11 H 0.028 0.972
12 C 0.023 3.977
13 N -0.941 5.941
14 Si 0.936 3.064
15 H -0.250 1.250
16 H -0.288 1.288
17 H -0.242 1.242
18 C 0.528 3.472
19 O -0.582 6.582
20 C -0.136 4.136
21 H 0.120 0.880
22 C -0.145 4.145
23 C 0.096 3.904
24 H 0.113 0.887
25 O -0.573 6.573
26 C -0.112 4.112
27 C -0.087 4.087
28 C -0.196 4.196
29 H 0.065 0.935
30 H 0.099 0.901
31 H 0.066 0.934
32 H 0.065 0.935
33 H 0.067 0.933
34 H 0.159 0.841
35 H 0.145 0.855
36 H 0.041 0.959
37 H 0.060 0.940
38 H 0.269 0.731
39 H 0.094 0.906
40 H 0.083 0.917
41 H 0.397 0.603
42 H 0.078 0.922
43 H 0.084 0.916
44 H 0.102 0.898
45 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.561 5.272 8.264 11.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.034 4.034
3 O -0.238 6.238
4 C 0.073 3.927
5 C -0.159 4.159
6 C -0.110 4.110
7 C 0.008 3.992
8 N -0.279 5.279
9 C 0.099 3.901
10 C -0.578 4.578
11 H 0.046 0.954
12 C -0.176 4.176
13 N -0.580 5.580
14 Si 0.758 3.242
15 H -0.174 1.174
16 H -0.214 1.214
17 H -0.165 1.165
18 C 0.319 3.681
19 O -0.462 6.462
20 C -0.157 4.157
21 H 0.138 0.862
22 C -0.183 4.183
23 C 0.037 3.963
24 H 0.130 0.870
25 O -0.381 6.381
26 C -0.150 4.150
27 C -0.107 4.107
28 C -0.215 4.215
29 H 0.084 0.916
30 H 0.118 0.882
31 H 0.085 0.915
32 H 0.084 0.916
33 H 0.085 0.915
34 H 0.176 0.824
35 H 0.163 0.837
36 H 0.059 0.941
37 H 0.077 0.923
38 H 0.078 0.922
39 H 0.112 0.888
40 H 0.102 0.898
41 H 0.248 0.752
42 H 0.097 0.903
43 H 0.103 0.897
44 H 0.120 0.880
45 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -7.299 4.736 8.860 12.418
hybrid contribution 0.733 0.040 -1.126 1.344
sum -6.565 4.775 7.735 11.213
Atomic orbital electron populations
1.21788 0.90799 1.04223 1.03409 1.23095 0.97338 0.80935 1.02026
1.86049 1.17913 1.31096 1.88700 1.19007 0.82755 0.94028 0.96915
1.20482 0.94160 0.95699 1.05520 1.21181 0.92607 0.98545 0.98689
1.17841 0.83706 0.93701 1.03953 1.45575 1.04433 1.61407 1.16525
1.19796 0.93927 0.93616 0.82764 1.21409 1.38697 0.93436 1.04223
0.95351 1.25737 0.94475 1.02091 0.95285 1.70048 1.41283 1.35021
1.11652 0.85887 0.80785 0.79634 0.77912 1.17422 1.21368 1.16519
1.20893 0.90447 0.75379 0.81396 1.90595 1.74026 1.48726 1.32893
1.22511 0.90059 1.01736 1.01386 0.86207 1.23640 0.99002 0.94176
1.01454 1.23242 0.95463 0.92028 0.85530 0.86971 1.86488 1.69440
1.50378 1.31828 1.22946 0.97039 0.98968 0.96025 1.21034 0.95368
0.96290 0.98009 1.21212 0.92636 0.99442 1.08222 0.91616 0.88224
0.91497 0.91646 0.91468 0.82377 0.83732 0.94118 0.92260 0.92235
0.88797 0.89823 0.75224 0.90300 0.89718 0.87984 0.83459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16
2 C 0.04 0.82 5.46 71.98 0.39 1.21 16
3 O -0.32 -8.77 10.14 -93.21 -0.94 -9.71 16
4 C 0.12 3.72 6.69 22.50 0.15 3.87 16
5 C -0.14 -4.29 9.98 22.35 0.22 -4.06 16
6 C -0.09 -3.16 9.65 22.38 0.22 -2.94 16
7 C 0.10 4.08 4.78 38.11 0.18 4.26 16
8 N -0.55 -23.69 2.51 -635.16 -1.59 -25.29 16
9 C 0.22 9.52 3.89 85.63 0.33 9.85 16
10 C -0.54 -28.56 9.47 25.60 0.24 -28.32 16
11 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16
12 C 0.02 1.23 5.47 84.66 0.46 1.70 16
13 N -0.94 -54.98 13.96 21.45 0.30 -54.68 16
14 Si 0.94 38.60 27.47 68.60 1.88 40.48 16
15 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16
16 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16
17 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16
18 C 0.53 22.41 7.05 87.66 0.62 23.02 16
19 O -0.58 -27.43 15.65 -3.06 -0.05 -27.48 16
20 C -0.14 -4.79 2.87 -11.01 -0.03 -4.82 16
21 H 0.12 4.55 7.53 -2.39 -0.02 4.53 16
22 C -0.14 -4.05 6.58 31.21 0.21 -3.85 16
23 C 0.10 2.37 5.23 31.23 0.16 2.54 16
24 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16
25 O -0.57 -13.32 13.68 -148.98 -2.04 -15.36 16
26 C -0.11 -3.50 7.23 31.14 0.23 -3.28 16
27 C -0.09 -3.55 9.53 22.38 0.21 -3.34 16
28 C -0.20 -6.58 9.03 22.35 0.20 -6.37 16
29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16
32 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16
33 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16
34 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16
35 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16
36 H 0.04 1.73 6.90 -2.39 -0.02 1.72 16
37 H 0.06 2.31 5.09 -2.39 -0.01 2.30 16
38 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16
39 H 0.09 2.34 7.57 -2.38 -0.02 2.32 16
40 H 0.08 2.44 8.09 -2.39 -0.02 2.42 16
41 H 0.40 5.06 9.12 -74.06 -0.68 4.39 16
42 H 0.08 2.81 7.43 -2.39 -0.02 2.79 16
43 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16
44 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16
45 H 0.15 4.09 6.29 -2.91 -0.02 4.07 16
Total: -1.00 -72.10 371.93 2.37 -69.73
By element:
Atomic # 1 Polarization: 33.90 SS G_CDS: 0.27 Total: 34.18 kcal
Atomic # 6 Polarization: -16.41 SS G_CDS: 4.54 Total: -11.87 kcal
Atomic # 7 Polarization: -78.67 SS G_CDS: -1.30 Total: -79.96 kcal
Atomic # 8 Polarization: -49.53 SS G_CDS: -3.03 Total: -52.56 kcal
Atomic # 14 Polarization: 38.60 SS G_CDS: 1.88 Total: 40.48 kcal
Total: -72.10 2.37 -69.73 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602090585.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.799 kcal
(2) G-P(sol) polarization free energy of solvation -72.102 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.734 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.534 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds