Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47265 * 2 1 4 4 C 1.46499 * 119.99858 * 287.55002 * 3 2 1 5 5 C 1.50697 * 109.47473 * 270.00161 * 4 3 2 6 6 H 1.07998 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99893 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00205 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99981 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47029 * 89.99605 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00291 * 9 7 5 12 12 H 1.48504 * 109.46899 * 330.00140 * 9 7 5 13 13 C 1.34776 * 120.00193 * 107.55632 * 3 2 1 14 14 O 1.21580 * 120.00158 * 176.73892 * 13 3 2 15 15 C 1.47607 * 119.99466 * 356.45610 * 13 3 2 16 16 C 1.39793 * 120.24580 * 152.57808 * 15 13 3 17 17 C 1.37391 * 119.96834 * 179.88361 * 16 15 13 18 18 C 1.39039 * 120.96729 * 359.79191 * 17 16 15 19 19 C 1.39967 * 119.09150 * 0.42418 * 18 17 16 20 20 O 1.36007 * 119.83420 * 179.67431 * 19 18 17 21 21 C 1.42900 * 117.00008 * 180.02562 * 20 19 18 22 22 C 1.37925 * 120.33343 * 359.40493 * 19 18 17 23 23 O 1.36090 * 111.20281 * 180.69218 * 18 17 16 24 24 C 1.43746 * 109.28042 * 341.05235 * 23 18 17 25 25 H 1.09007 * 110.74296 * 269.43934 * 24 23 18 26 26 C 1.52995 * 110.90304 * 146.16903 * 24 23 18 27 27 C 1.51683 * 132.02528 * 179.45553 * 17 16 15 28 28 H 1.08998 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46952 * 299.99940 * 1 2 3 30 30 H 1.09003 * 109.47164 * 59.99728 * 1 2 3 31 31 H 1.09006 * 109.46952 * 240.00059 * 2 1 3 32 32 H 1.08997 * 109.47579 * 120.00137 * 2 1 3 33 33 H 1.09001 * 109.47160 * 30.00348 * 4 3 2 34 34 H 1.09003 * 109.46969 * 149.99668 * 4 3 2 35 35 H 0.96999 * 120.00135 * 180.02562 * 8 7 5 36 36 H 1.08000 * 120.01835 * 359.86396 * 16 15 13 37 37 H 1.09001 * 109.46826 * 180.02562 * 21 20 19 38 38 H 1.09007 * 109.47206 * 300.00308 * 21 20 19 39 39 H 1.09004 * 109.47250 * 60.00193 * 21 20 19 40 40 H 1.08003 * 119.93418 * 180.30262 * 22 19 18 41 41 H 1.09001 * 109.47404 * 306.52747 * 26 24 23 42 42 H 1.09004 * 109.47280 * 66.52482 * 26 24 23 43 43 H 1.08999 * 109.47152 * 186.52045 * 26 24 23 44 44 H 1.08999 * 110.94319 * 313.95114 * 27 17 16 45 45 H 1.09004 * 110.94269 * 77.60427 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9018 2.1993 -1.2097 5 6 3.1390 2.0283 -2.0530 6 1 3.9325 1.3751 -1.7213 7 6 3.2577 2.7057 -3.2480 8 7 2.2916 3.5014 -3.6517 9 14 4.7916 2.4942 -4.2930 10 1 4.5952 1.3655 -5.2378 11 1 5.0455 3.7415 -5.0578 12 1 5.9537 2.2074 -3.4140 13 6 2.5749 1.8992 1.1128 14 8 3.0338 3.0250 1.0955 15 6 2.6217 1.1020 2.3542 16 6 3.6295 1.3254 3.2969 17 6 3.6662 0.5817 4.4516 18 6 2.7091 -0.3946 4.7044 19 6 1.7025 -0.6219 3.7589 20 8 0.7625 -1.5778 3.9878 21 6 -0.2365 -1.7593 2.9822 22 6 1.6558 0.1224 2.5986 23 8 2.9251 -0.9961 5.9059 24 6 4.2820 -0.7602 6.3177 25 1 4.9380 -1.5530 5.9579 26 6 4.3760 -0.6305 7.8392 27 6 4.6198 0.5843 5.6312 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.0275 1.8836 -1.7790 34 1 1.7944 3.2475 -0.9305 35 1 2.3751 3.9776 -4.4926 36 1 4.3790 2.0820 3.1176 37 1 -0.9218 -2.5493 3.2894 38 1 -0.7903 -0.8300 2.8483 39 1 0.2404 -2.0368 2.0421 40 1 0.8733 -0.0551 1.8756 41 1 3.6718 0.1269 8.1836 42 1 4.1345 -1.5878 8.3011 43 1 5.3887 -0.3383 8.1171 44 1 5.6563 0.6001 5.2942 45 1 4.4153 1.4238 6.2956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728611519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -52.247396 kcal Electronic energy + Delta-G solvation = -27535.568398 eV Core-core repulsion = 23713.238488 eV Total energy + Delta-G solvation = -3822.329910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46004 -39.73583 -38.79811 -36.35138 -35.59377 -33.11617 -32.90720 -31.25802 -30.29752 -29.84966 -27.51203 -27.49246 -26.24850 -23.88256 -23.18139 -21.98199 -21.85911 -21.54145 -19.06737 -17.91158 -17.50147 -17.02505 -16.47909 -16.34014 -15.98694 -15.63142 -15.05529 -14.96443 -14.47658 -14.20950 -14.14629 -13.73403 -13.51730 -13.23167 -13.07864 -12.71707 -12.58752 -12.52568 -12.20424 -12.17993 -12.10046 -11.84664 -11.56813 -11.45645 -11.28207 -11.20478 -11.04177 -10.98806 -10.88687 -10.60769 -10.39572 -10.13875 -9.64693 -9.05933 -8.50191 -8.44030 -7.93157 -7.67491 -6.05191 -4.09543 0.94552 1.31120 2.97642 3.18752 3.22664 3.29871 3.36646 3.41346 3.75553 4.02496 4.27187 4.33727 4.45104 4.69167 4.74831 4.83335 4.91794 5.01583 5.06105 5.11806 5.18338 5.27897 5.29327 5.32871 5.34733 5.41175 5.47053 5.49595 5.61856 5.62651 5.69946 5.78709 5.87799 6.03029 6.19079 6.22486 6.36045 6.43411 6.47886 6.78302 7.05027 7.36814 7.41315 7.50277 7.91112 8.22014 8.35203 8.87513 9.03529 9.55328 11.02981 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.003586 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.787489 B = 7805.879553 C = 8903.420719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 N -0.587 5.587 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.549 3.451 14 O -0.532 6.532 15 C -0.107 4.107 16 C -0.050 4.050 17 C -0.149 4.149 18 C 0.092 3.908 19 C 0.100 3.900 20 O -0.312 6.312 21 C 0.021 3.979 22 C -0.169 4.169 23 O -0.293 6.293 24 C 0.074 3.926 25 H 0.087 0.913 26 C -0.148 4.148 27 C -0.103 4.103 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.170 0.830 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -12.018 18.556 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.046 4.046 3 N -0.318 5.318 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.335 3.665 14 O -0.410 6.410 15 C -0.111 4.111 16 C -0.069 4.069 17 C -0.150 4.150 18 C 0.046 3.954 19 C 0.055 3.945 20 O -0.226 6.226 21 C -0.074 4.074 22 C -0.188 4.188 23 O -0.207 6.207 24 C 0.019 3.981 25 H 0.104 0.896 26 C -0.205 4.205 27 C -0.140 4.140 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.187 0.813 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.266 -11.545 18.662 21.981 hybrid contribution 0.776 0.008 -1.052 1.307 sum -0.491 -11.537 17.610 21.058 Atomic orbital electron populations 1.22343 0.96672 1.01742 1.03032 1.22137 0.93815 0.84955 1.03736 1.48129 1.57747 1.12846 1.13062 1.19308 0.97151 0.91183 0.79579 1.21425 1.03529 1.27249 1.04233 0.92400 1.24928 0.96634 0.94896 0.97621 1.69927 1.32516 1.28777 1.22208 0.86495 0.83304 0.77503 0.80120 1.20659 1.21078 1.19863 1.17972 0.79305 0.86401 0.82791 1.90766 1.46482 1.19231 1.84527 1.19906 0.96592 0.97899 0.96665 1.20280 0.97960 0.98026 0.90639 1.20456 0.99006 0.98284 0.97231 1.18836 0.95688 0.94358 0.86558 1.18019 0.91079 0.93078 0.92342 1.86147 1.38144 1.52816 1.45486 1.23189 0.90274 1.02355 0.91595 1.22146 1.02643 0.97173 0.96827 1.86868 1.30034 1.72525 1.31321 1.23385 0.81799 0.96616 0.96348 0.89561 1.21872 1.02970 1.03387 0.92317 1.21886 0.99670 0.98240 0.94228 0.91775 0.92593 0.90737 0.90341 0.89335 0.94697 0.93771 0.92712 0.84390 0.88098 0.92516 0.92326 0.81304 0.91346 0.91357 0.90269 0.88687 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.09 37.15 0.34 -2.03 16 2 C 0.08 1.26 5.61 -4.04 -0.02 1.24 16 3 N -0.59 -12.61 2.51 -176.27 -0.44 -13.05 16 4 C 0.25 6.41 5.06 -5.20 -0.03 6.39 16 5 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.55 12.04 7.46 -12.44 -0.09 11.94 16 14 O -0.53 -13.81 16.28 5.30 0.09 -13.73 16 15 C -0.11 -1.89 5.50 -104.94 -0.58 -2.47 16 16 C -0.05 -0.80 9.58 -39.31 -0.38 -1.18 16 17 C -0.15 -2.06 6.25 -104.15 -0.65 -2.71 16 18 C 0.09 1.34 6.98 -38.64 -0.27 1.07 16 19 C 0.10 1.47 6.70 -39.05 -0.26 1.21 16 20 O -0.31 -4.20 10.50 -19.78 -0.21 -4.40 16 21 C 0.02 0.20 9.81 101.05 0.99 1.19 16 22 C -0.17 -2.55 6.40 -39.14 -0.25 -2.80 16 23 O -0.29 -3.97 10.81 -20.05 -0.22 -4.19 16 24 C 0.07 0.71 4.25 -25.84 -0.11 0.60 16 25 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 26 C -0.15 -1.02 9.59 37.16 0.36 -0.66 16 27 C -0.10 -1.02 6.65 -26.51 -0.18 -1.20 16 28 H 0.06 0.62 7.98 -51.93 -0.41 0.21 16 29 H 0.06 0.70 6.86 -51.93 -0.36 0.35 16 30 H 0.07 1.10 7.27 -51.93 -0.38 0.73 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.30 4.12 -51.93 -0.21 1.09 16 33 H 0.04 0.90 7.15 -51.93 -0.37 0.53 16 34 H 0.04 1.30 7.47 -51.93 -0.39 0.91 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 2.20 7.90 -52.49 -0.41 1.79 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.50 7.63 -51.93 -0.40 0.10 16 39 H 0.06 0.49 7.47 -51.93 -0.39 0.11 16 40 H 0.17 2.28 1.01 -52.48 -0.05 2.23 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -34.78 363.94 -7.42 -42.20 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.29 Total: -0.41 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.55 Total: -3.00 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.29 Total: -38.81 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.34 Total: -22.32 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.78 -7.42 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728611519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.050 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds