Wall clock time and date at job start Tue Mar 31 2020 12:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47265 * 2 1 4 4 C 1.46499 * 119.99858 * 287.55002 * 3 2 1 5 5 C 1.50697 * 109.47473 * 270.00161 * 4 3 2 6 6 H 1.07998 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99893 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00205 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99981 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47029 * 89.99605 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00291 * 9 7 5 12 12 H 1.48504 * 109.46899 * 330.00140 * 9 7 5 13 13 C 1.34776 * 120.00193 * 107.55632 * 3 2 1 14 14 O 1.21580 * 120.00158 * 176.73892 * 13 3 2 15 15 C 1.47607 * 119.99466 * 356.45610 * 13 3 2 16 16 C 1.39793 * 120.24580 * 152.57808 * 15 13 3 17 17 C 1.37391 * 119.96834 * 179.88361 * 16 15 13 18 18 C 1.39039 * 120.96729 * 359.79191 * 17 16 15 19 19 C 1.39967 * 119.09150 * 0.42418 * 18 17 16 20 20 O 1.36007 * 119.83420 * 179.67431 * 19 18 17 21 21 C 1.42900 * 117.00008 * 180.02562 * 20 19 18 22 22 C 1.37925 * 120.33343 * 359.40493 * 19 18 17 23 23 O 1.36090 * 111.20281 * 180.69218 * 18 17 16 24 24 C 1.43746 * 109.28042 * 341.05235 * 23 18 17 25 25 H 1.09007 * 110.74296 * 269.43934 * 24 23 18 26 26 C 1.52995 * 110.90304 * 146.16903 * 24 23 18 27 27 C 1.51683 * 132.02528 * 179.45553 * 17 16 15 28 28 H 1.08998 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46952 * 299.99940 * 1 2 3 30 30 H 1.09003 * 109.47164 * 59.99728 * 1 2 3 31 31 H 1.09006 * 109.46952 * 240.00059 * 2 1 3 32 32 H 1.08997 * 109.47579 * 120.00137 * 2 1 3 33 33 H 1.09001 * 109.47160 * 30.00348 * 4 3 2 34 34 H 1.09003 * 109.46969 * 149.99668 * 4 3 2 35 35 H 0.96999 * 120.00135 * 180.02562 * 8 7 5 36 36 H 1.08000 * 120.01835 * 359.86396 * 16 15 13 37 37 H 1.09001 * 109.46826 * 180.02562 * 21 20 19 38 38 H 1.09007 * 109.47206 * 300.00308 * 21 20 19 39 39 H 1.09004 * 109.47250 * 60.00193 * 21 20 19 40 40 H 1.08003 * 119.93418 * 180.30262 * 22 19 18 41 41 H 1.09001 * 109.47404 * 306.52747 * 26 24 23 42 42 H 1.09004 * 109.47280 * 66.52482 * 26 24 23 43 43 H 1.08999 * 109.47152 * 186.52045 * 26 24 23 44 44 H 1.08999 * 110.94319 * 313.95114 * 27 17 16 45 45 H 1.09004 * 110.94269 * 77.60427 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9018 2.1993 -1.2097 5 6 3.1390 2.0283 -2.0530 6 1 3.9325 1.3751 -1.7213 7 6 3.2577 2.7057 -3.2480 8 7 2.2916 3.5014 -3.6517 9 14 4.7916 2.4942 -4.2930 10 1 4.5952 1.3655 -5.2378 11 1 5.0455 3.7415 -5.0578 12 1 5.9537 2.2074 -3.4140 13 6 2.5749 1.8992 1.1128 14 8 3.0338 3.0250 1.0955 15 6 2.6217 1.1020 2.3542 16 6 3.6295 1.3254 3.2969 17 6 3.6662 0.5817 4.4516 18 6 2.7091 -0.3946 4.7044 19 6 1.7025 -0.6219 3.7589 20 8 0.7625 -1.5778 3.9878 21 6 -0.2365 -1.7593 2.9822 22 6 1.6558 0.1224 2.5986 23 8 2.9251 -0.9961 5.9059 24 6 4.2820 -0.7602 6.3177 25 1 4.9380 -1.5530 5.9579 26 6 4.3760 -0.6305 7.8392 27 6 4.6198 0.5843 5.6312 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.0275 1.8836 -1.7790 34 1 1.7944 3.2475 -0.9305 35 1 2.3751 3.9776 -4.4926 36 1 4.3790 2.0820 3.1176 37 1 -0.9218 -2.5493 3.2894 38 1 -0.7903 -0.8300 2.8483 39 1 0.2404 -2.0368 2.0421 40 1 0.8733 -0.0551 1.8756 41 1 3.6718 0.1269 8.1836 42 1 4.1345 -1.5878 8.3011 43 1 5.3887 -0.3383 8.1171 44 1 5.6563 0.6001 5.2942 45 1 4.4153 1.4238 6.2956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728611519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:40 Heat of formation + Delta-G solvation = -74.875246 kcal Electronic energy + Delta-G solvation = -27536.549615 eV Core-core repulsion = 23713.238488 eV Total energy + Delta-G solvation = -3823.311127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54199 -41.08682 -40.00197 -37.57162 -37.27053 -34.99298 -33.92768 -32.57350 -31.62791 -30.95195 -29.30024 -28.40223 -27.25103 -25.55452 -24.65117 -23.43047 -22.70176 -22.59310 -20.54511 -18.95426 -18.82516 -18.55292 -18.18897 -17.51718 -17.14366 -16.95239 -16.56240 -16.11110 -15.97822 -15.75214 -15.45609 -15.05216 -14.47361 -14.40303 -14.17880 -13.93072 -13.75075 -13.56176 -13.39492 -13.36542 -13.31409 -13.15074 -12.99315 -12.74465 -12.59354 -12.48951 -12.35584 -12.26915 -12.13138 -12.03864 -11.91933 -11.72978 -11.57423 -10.78306 -10.64785 -9.63174 -9.57106 -8.99353 -8.23894 -6.38311 -0.29764 0.14823 1.35505 1.38671 1.49031 1.74309 2.02475 2.20719 2.27545 2.40362 2.60109 3.05681 3.33338 3.39262 3.57560 3.78731 3.93970 4.00841 4.06433 4.10640 4.19471 4.24086 4.31681 4.35196 4.46509 4.52738 4.67657 4.70583 4.75254 4.79335 4.83617 4.86150 4.89438 4.99465 5.03952 5.09593 5.12381 5.22624 5.26824 5.33120 5.36831 5.53878 5.79225 5.82471 6.04162 6.35265 6.62464 6.70555 7.21443 7.36929 8.83356 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.003586 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.787489 B = 7805.879553 C = 8903.420719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 N -0.591 5.591 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.275 1.275 13 C 0.542 3.458 14 O -0.589 6.589 15 C -0.129 4.129 16 C -0.060 4.060 17 C -0.146 4.146 18 C 0.089 3.911 19 C 0.100 3.900 20 O -0.322 6.322 21 C 0.006 3.994 22 C -0.162 4.162 23 O -0.306 6.306 24 C 0.069 3.931 25 H 0.100 0.900 26 C -0.144 4.144 27 C -0.101 4.101 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.033 0.967 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.183 0.817 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -14.576 20.007 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.051 4.051 3 N -0.320 5.320 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.331 3.669 14 O -0.471 6.471 15 C -0.133 4.133 16 C -0.079 4.079 17 C -0.147 4.147 18 C 0.042 3.958 19 C 0.054 3.946 20 O -0.236 6.236 21 C -0.088 4.088 22 C -0.181 4.181 23 O -0.221 6.221 24 C 0.014 3.986 25 H 0.118 0.882 26 C -0.201 4.201 27 C -0.138 4.138 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.051 0.949 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.200 0.800 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.123 0.877 44 H 0.134 0.866 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.819 -14.162 20.128 24.625 hybrid contribution 0.583 0.731 -1.384 1.670 sum -0.236 -13.431 18.745 23.061 Atomic orbital electron populations 1.22314 0.93936 1.04509 1.02413 1.22491 0.96081 0.82011 1.04559 1.48131 1.57795 1.14471 1.11653 1.18783 0.96418 0.89609 0.81002 1.21674 1.04106 1.27538 1.05031 0.93158 1.25830 0.99906 0.94318 0.98872 1.70039 1.34412 1.29357 1.22801 0.85419 0.78926 0.78120 0.78372 1.18691 1.20468 1.19967 1.18660 0.78020 0.86129 0.84052 1.90711 1.48976 1.21734 1.85671 1.19538 0.99014 0.99354 0.95364 1.20263 0.97716 0.98506 0.91423 1.20744 0.99661 0.97044 0.97211 1.19121 0.95485 0.94267 0.86898 1.18080 0.91442 0.93062 0.92024 1.86154 1.38439 1.52043 1.46976 1.23576 0.89931 1.03745 0.91524 1.22093 1.02117 0.96354 0.97506 1.86868 1.32390 1.72308 1.30508 1.23754 0.80099 0.96705 0.98076 0.88182 1.21908 1.04457 1.03611 0.90105 1.22058 0.99901 0.99073 0.92726 0.87229 0.91900 0.92697 0.90817 0.87191 0.94910 0.98318 0.92313 0.85273 0.85279 0.91946 0.91172 0.80014 0.91832 0.90895 0.87692 0.86586 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 9.09 71.98 0.65 -3.70 16 2 C 0.07 2.28 5.61 86.38 0.48 2.76 16 3 N -0.59 -26.49 2.51 -829.85 -2.08 -28.57 16 4 C 0.26 14.44 5.06 85.63 0.43 14.87 16 5 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 9 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.54 25.07 7.46 86.72 0.65 25.72 16 14 O -0.59 -32.79 16.28 -3.97 -0.06 -32.86 16 15 C -0.13 -4.67 5.50 -20.07 -0.11 -4.78 16 16 C -0.06 -1.95 9.58 22.45 0.21 -1.74 16 17 C -0.15 -3.87 6.25 -19.56 -0.12 -3.99 16 18 C 0.09 2.46 6.98 22.88 0.16 2.62 16 19 C 0.10 2.78 6.70 22.61 0.15 2.93 16 20 O -0.32 -7.90 10.50 -93.61 -0.98 -8.88 16 21 C 0.01 0.10 9.81 113.37 1.11 1.21 16 22 C -0.16 -4.76 6.40 22.56 0.14 -4.61 16 23 O -0.31 -7.63 10.81 -94.55 -1.02 -8.65 16 24 C 0.07 1.12 4.25 31.17 0.13 1.25 16 25 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 26 C -0.14 -1.51 9.59 71.98 0.69 -0.82 16 27 C -0.10 -1.75 6.65 30.74 0.20 -1.55 16 28 H 0.11 1.75 7.98 -2.39 -0.02 1.73 16 29 H 0.06 1.49 6.86 -2.38 -0.02 1.48 16 30 H 0.05 1.61 7.27 -2.39 -0.02 1.59 16 31 H 0.07 2.45 8.14 -2.38 -0.02 2.44 16 32 H 0.11 3.12 4.12 -2.39 -0.01 3.11 16 33 H 0.03 1.79 7.15 -2.39 -0.02 1.77 16 34 H 0.00 -0.08 7.47 -2.39 -0.02 -0.10 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.13 4.35 7.90 -2.91 -0.02 4.32 16 37 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 0.92 7.63 -2.38 -0.02 0.90 16 39 H 0.07 0.94 7.47 -2.38 -0.02 0.92 16 40 H 0.18 4.66 1.01 -2.91 0.00 4.65 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.11 1.62 7.93 -2.38 -0.02 1.60 16 Total: -1.00 -79.88 363.94 4.67 -75.21 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.01 Total: 12.95 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.50 Total: -0.65 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.80 Total: -84.54 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.07 Total: -50.39 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -79.88 4.67 -75.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728611519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.335 kcal (2) G-P(sol) polarization free energy of solvation -79.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds