Wall clock time and date at job start Tue Mar 31 2020 12:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47566 * 2 1 4 4 C 1.46500 * 119.99641 * 270.27643 * 3 2 1 5 5 C 1.52999 * 109.47130 * 280.38470 * 4 3 2 6 6 C 1.34769 * 120.00238 * 89.99912 * 3 2 1 7 7 O 1.21531 * 120.00080 * 357.07162 * 6 3 2 8 8 C 1.48045 * 120.00141 * 177.07230 * 6 3 2 9 9 C 1.39556 * 119.99241 * 322.30079 * 8 6 3 10 10 C 1.37818 * 120.00487 * 179.72697 * 9 8 6 11 11 C 1.39602 * 119.99256 * 0.56560 * 10 9 8 12 12 C 1.47928 * 120.00654 * 179.68307 * 11 10 9 13 13 O 1.21442 * 120.00132 * 180.02562 * 12 11 10 14 14 O 1.34684 * 119.99870 * 0.02562 * 12 11 10 15 15 C 1.45199 * 117.00225 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47495 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47255 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00111 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00035 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99971 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47014 * 59.99765 * 21 19 17 23 23 H 1.48501 * 109.47020 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47065 * 299.99348 * 21 19 17 25 25 C 1.39605 * 119.99109 * 359.70609 * 11 10 9 26 26 C 1.37820 * 119.99283 * 0.02562 * 25 11 10 27 27 H 1.09001 * 109.47106 * 59.99504 * 1 2 3 28 28 H 1.08994 * 109.47920 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47110 * 300.00376 * 1 2 3 30 30 H 1.09005 * 109.46660 * 239.99339 * 2 1 3 31 31 H 1.09005 * 109.46837 * 120.00071 * 2 1 3 32 32 H 1.08997 * 109.47220 * 40.38478 * 4 3 2 33 33 H 1.08999 * 109.47306 * 160.38559 * 4 3 2 34 34 H 1.09003 * 109.47400 * 320.40028 * 5 4 3 35 35 H 1.09005 * 109.47149 * 80.39709 * 5 4 3 36 36 H 1.09005 * 109.47363 * 200.39784 * 5 4 3 37 37 H 1.07995 * 120.00099 * 359.97438 * 9 8 6 38 38 H 1.08001 * 120.00398 * 180.27279 * 10 9 8 39 39 H 1.09004 * 109.47157 * 300.00040 * 15 14 12 40 40 H 1.08998 * 109.47014 * 60.00049 * 15 14 12 41 41 H 1.09004 * 109.46747 * 300.00042 * 16 15 14 42 42 H 1.08998 * 109.47153 * 59.99886 * 16 15 14 43 43 H 0.96993 * 120.00324 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.00759 * 179.97438 * 25 11 10 45 45 H 1.07994 * 120.00053 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2568 2.0737 -1.2688 5 6 3.6018 1.6297 -1.8473 6 6 2.2431 2.0165 1.1671 7 8 1.9902 1.4627 2.2189 8 6 2.7979 3.3890 1.1679 9 6 3.7673 3.7502 0.2312 10 6 4.2799 5.0295 0.2281 11 6 3.8379 5.9606 1.1697 12 6 4.3931 7.3318 1.1711 13 8 4.0089 8.1416 1.9905 14 8 5.3245 7.6821 0.2636 15 6 5.8241 9.0441 0.3237 16 6 6.8659 9.2544 -0.7769 17 6 7.3848 10.6679 -0.7140 18 1 7.0088 11.3483 0.0356 19 6 8.3388 11.0927 -1.6142 20 7 8.7963 10.2643 -2.5275 21 14 8.9815 12.8450 -1.5368 22 1 9.6068 13.0847 -0.2114 23 1 9.9927 13.0490 -2.6049 24 1 7.8561 13.7940 -1.7322 25 6 2.8724 5.5974 2.1103 26 6 2.3561 4.3196 2.1094 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.4604 1.8290 -1.9715 33 1 2.2725 3.1501 -1.0978 34 1 4.3295 1.5321 -1.0416 35 1 3.4827 0.6685 -2.3475 36 1 3.9516 2.3719 -2.5649 37 1 4.1129 3.0284 -0.4940 38 1 5.0268 5.3103 -0.4997 39 1 4.9982 9.7408 0.1796 40 1 6.2824 9.2204 1.2968 41 1 7.6918 8.5578 -0.6331 42 1 6.4072 9.0783 -1.7498 43 1 9.4677 10.5630 -3.1606 44 1 2.5306 6.3174 2.8391 45 1 1.6088 4.0387 2.8367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729123013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:57 Heat of formation + Delta-G solvation = -94.914238 kcal Electronic energy + Delta-G solvation = -25860.442388 eV Core-core repulsion = 22036.262305 eV Total energy + Delta-G solvation = -3824.180083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98874 -40.03868 -38.34081 -36.72447 -36.13871 -33.41053 -33.13554 -31.72579 -30.96744 -30.30337 -29.87694 -25.94728 -24.78287 -24.06767 -23.34506 -22.70218 -21.33196 -20.68616 -19.67283 -18.06163 -17.62679 -17.15879 -16.54887 -16.05753 -15.99739 -15.71308 -15.41566 -14.95338 -14.73466 -14.55103 -14.14626 -14.03546 -13.62406 -13.39555 -13.28695 -13.10935 -12.97436 -12.67490 -12.52986 -12.38573 -12.36533 -12.07035 -11.62434 -11.40884 -11.28148 -11.25116 -11.07290 -10.78053 -10.75567 -10.40893 -10.20398 -9.71206 -9.67830 -9.35548 -9.31087 -9.23256 -9.12514 -8.47202 -6.13649 -4.18082 0.24182 1.07731 2.18795 2.50345 2.81885 3.01240 3.28243 3.32327 3.35934 3.60603 4.00961 4.35253 4.36478 4.56262 4.63453 4.65445 4.68793 4.87968 4.91161 4.94622 5.01657 5.05499 5.17192 5.20250 5.23039 5.34179 5.41543 5.43149 5.52003 5.67583 5.75620 5.80370 5.90557 5.95906 6.04113 6.04630 6.12881 6.14773 6.48838 6.58318 6.86127 6.92121 7.50608 7.57511 7.75615 7.82333 8.08833 8.20494 8.87068 9.46429 10.97780 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.002222 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.480939 B =12596.841777 C =13546.078875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.607 5.607 4 C 0.090 3.910 5 C -0.182 4.182 6 C 0.560 3.440 7 O -0.531 6.531 8 C -0.108 4.108 9 C -0.121 4.121 10 C -0.068 4.068 11 C -0.092 4.092 12 C 0.497 3.503 13 O -0.510 6.510 14 O -0.351 6.351 15 C 0.075 3.925 16 C 0.025 3.975 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.065 4.065 26 C -0.079 4.079 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.264 0.736 44 H 0.145 0.855 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.035 -21.408 1.270 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.340 5.340 4 C -0.033 4.033 5 C -0.240 4.240 6 C 0.349 3.651 7 O -0.407 6.407 8 C -0.111 4.111 9 C -0.139 4.139 10 C -0.086 4.086 11 C -0.094 4.094 12 C 0.341 3.659 13 O -0.400 6.400 14 O -0.267 6.267 15 C 0.003 3.997 16 C -0.012 4.012 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.083 4.083 26 C -0.097 4.097 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.162 0.838 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.122 -21.458 1.883 26.319 hybrid contribution 0.425 1.121 -0.051 1.200 sum -14.697 -20.337 1.831 25.159 Atomic orbital electron populations 1.22127 0.95728 1.02320 1.02471 1.21442 0.94558 0.81784 1.03299 1.47965 1.65770 1.14349 1.05958 1.21953 0.97884 0.98563 0.84861 1.22405 0.97112 1.02748 1.01749 1.18475 0.77512 0.85619 0.83513 1.90784 1.51687 1.67310 1.30967 1.20070 0.99307 0.93853 0.97867 1.22024 0.96298 0.97257 0.98294 1.21574 0.97928 0.92024 0.97101 1.19524 0.99162 0.91984 0.98709 1.21143 0.77805 0.87785 0.79131 1.90798 1.58855 1.52308 1.38022 1.86556 1.51462 1.36541 1.52100 1.23714 0.97800 0.75810 1.02385 1.19170 0.92205 0.97450 0.92350 1.20935 1.23142 0.96170 1.16327 0.92272 1.24979 0.96146 0.97939 0.95060 1.69955 1.29600 1.35329 1.17945 0.86523 0.78679 0.84227 0.77819 1.20053 1.21117 1.20048 1.21269 0.93865 0.96196 0.96959 1.21103 0.99617 0.91899 0.97125 0.92521 0.91499 0.92103 0.90308 0.89767 0.90200 0.88709 0.91330 0.91801 0.90404 0.83038 0.83215 0.92111 0.92107 0.95301 0.95301 0.92632 0.83755 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.65 16 2 C 0.11 0.74 6.09 -4.04 -0.02 0.72 16 3 N -0.61 -4.86 2.48 -174.73 -0.43 -5.29 16 4 C 0.09 0.52 5.57 -4.04 -0.02 0.50 16 5 C -0.18 -0.88 8.62 37.16 0.32 -0.56 16 6 C 0.56 6.17 7.35 -12.24 -0.09 6.08 16 7 O -0.53 -7.52 16.48 5.34 0.09 -7.43 16 8 C -0.11 -1.15 5.16 -104.89 -0.54 -1.69 16 9 C -0.12 -1.16 7.43 -39.24 -0.29 -1.45 16 10 C -0.07 -0.79 9.60 -39.23 -0.38 -1.16 16 11 C -0.09 -1.27 5.88 -104.91 -0.62 -1.89 16 12 C 0.50 8.73 7.90 34.70 0.27 9.00 16 13 O -0.51 -10.06 16.12 -19.22 -0.31 -10.37 16 14 O -0.35 -6.78 9.46 -40.45 -0.38 -7.16 16 15 C 0.08 1.64 5.41 37.16 0.20 1.84 16 16 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 17 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.06 -0.78 9.58 -39.22 -0.38 -1.16 16 26 C -0.08 -0.86 9.60 -39.24 -0.38 -1.24 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.08 0.67 7.46 -51.93 -0.39 0.29 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.61 5.20 -51.93 -0.27 0.34 16 34 H 0.07 0.40 6.70 -51.93 -0.35 0.05 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.15 1.12 3.22 -52.49 -0.17 0.96 16 38 H 0.15 1.67 7.60 -52.49 -0.40 1.27 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.14 1.67 7.64 -52.49 -0.40 1.27 16 45 H 0.14 1.36 8.03 -52.49 -0.42 0.94 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -32.79 378.42 -8.30 -41.09 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.58 Total: -3.02 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.10 Total: -4.48 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.30 Total: -30.46 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.60 Total: -24.96 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.79 -8.30 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729123013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.821 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds