Wall clock time and date at job start Tue Mar 31 2020 12:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47566 * 2 1 4 4 C 1.46500 * 119.99641 * 270.27643 * 3 2 1 5 5 C 1.52999 * 109.47130 * 280.38470 * 4 3 2 6 6 C 1.34769 * 120.00238 * 89.99912 * 3 2 1 7 7 O 1.21531 * 120.00080 * 357.07162 * 6 3 2 8 8 C 1.48045 * 120.00141 * 177.07230 * 6 3 2 9 9 C 1.39556 * 119.99241 * 322.30079 * 8 6 3 10 10 C 1.37818 * 120.00487 * 179.72697 * 9 8 6 11 11 C 1.39602 * 119.99256 * 0.56560 * 10 9 8 12 12 C 1.47928 * 120.00654 * 179.68307 * 11 10 9 13 13 O 1.21442 * 120.00132 * 180.02562 * 12 11 10 14 14 O 1.34684 * 119.99870 * 0.02562 * 12 11 10 15 15 C 1.45199 * 117.00225 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47495 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47255 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00111 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00035 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99971 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47014 * 59.99765 * 21 19 17 23 23 H 1.48501 * 109.47020 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47065 * 299.99348 * 21 19 17 25 25 C 1.39605 * 119.99109 * 359.70609 * 11 10 9 26 26 C 1.37820 * 119.99283 * 0.02562 * 25 11 10 27 27 H 1.09001 * 109.47106 * 59.99504 * 1 2 3 28 28 H 1.08994 * 109.47920 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47110 * 300.00376 * 1 2 3 30 30 H 1.09005 * 109.46660 * 239.99339 * 2 1 3 31 31 H 1.09005 * 109.46837 * 120.00071 * 2 1 3 32 32 H 1.08997 * 109.47220 * 40.38478 * 4 3 2 33 33 H 1.08999 * 109.47306 * 160.38559 * 4 3 2 34 34 H 1.09003 * 109.47400 * 320.40028 * 5 4 3 35 35 H 1.09005 * 109.47149 * 80.39709 * 5 4 3 36 36 H 1.09005 * 109.47363 * 200.39784 * 5 4 3 37 37 H 1.07995 * 120.00099 * 359.97438 * 9 8 6 38 38 H 1.08001 * 120.00398 * 180.27279 * 10 9 8 39 39 H 1.09004 * 109.47157 * 300.00040 * 15 14 12 40 40 H 1.08998 * 109.47014 * 60.00049 * 15 14 12 41 41 H 1.09004 * 109.46747 * 300.00042 * 16 15 14 42 42 H 1.08998 * 109.47153 * 59.99886 * 16 15 14 43 43 H 0.96993 * 120.00324 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.00759 * 179.97438 * 25 11 10 45 45 H 1.07994 * 120.00053 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2568 2.0737 -1.2688 5 6 3.6018 1.6297 -1.8473 6 6 2.2431 2.0165 1.1671 7 8 1.9902 1.4627 2.2189 8 6 2.7979 3.3890 1.1679 9 6 3.7673 3.7502 0.2312 10 6 4.2799 5.0295 0.2281 11 6 3.8379 5.9606 1.1697 12 6 4.3931 7.3318 1.1711 13 8 4.0089 8.1416 1.9905 14 8 5.3245 7.6821 0.2636 15 6 5.8241 9.0441 0.3237 16 6 6.8659 9.2544 -0.7769 17 6 7.3848 10.6679 -0.7140 18 1 7.0088 11.3483 0.0356 19 6 8.3388 11.0927 -1.6142 20 7 8.7963 10.2643 -2.5275 21 14 8.9815 12.8450 -1.5368 22 1 9.6068 13.0847 -0.2114 23 1 9.9927 13.0490 -2.6049 24 1 7.8561 13.7940 -1.7322 25 6 2.8724 5.5974 2.1103 26 6 2.3561 4.3196 2.1094 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.4604 1.8290 -1.9715 33 1 2.2725 3.1501 -1.0978 34 1 4.3295 1.5321 -1.0416 35 1 3.4827 0.6685 -2.3475 36 1 3.9516 2.3719 -2.5649 37 1 4.1129 3.0284 -0.4940 38 1 5.0268 5.3103 -0.4997 39 1 4.9982 9.7408 0.1796 40 1 6.2824 9.2204 1.2968 41 1 7.6918 8.5578 -0.6331 42 1 6.4072 9.0783 -1.7498 43 1 9.4677 10.5630 -3.1606 44 1 2.5306 6.3174 2.8391 45 1 1.6088 4.0387 2.8367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729123013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:56 Heat of formation + Delta-G solvation = -112.157471 kcal Electronic energy + Delta-G solvation = -25861.190111 eV Core-core repulsion = 22036.262305 eV Total energy + Delta-G solvation = -3824.927806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93089 -41.32131 -39.35626 -37.70460 -37.44834 -35.45235 -33.83071 -32.80686 -32.05768 -31.76141 -30.56816 -27.45626 -26.19535 -24.57968 -24.28165 -23.55297 -23.00962 -22.12601 -20.42014 -19.32365 -18.60104 -18.31723 -18.05288 -17.57146 -17.45488 -16.56617 -16.50295 -16.20476 -15.83188 -15.47908 -15.19410 -15.01869 -14.64412 -14.60708 -14.36448 -14.14041 -13.91259 -13.73240 -13.52203 -13.40898 -13.13792 -13.04949 -12.94022 -12.63544 -12.61033 -12.58974 -12.19943 -12.00976 -11.94060 -11.85714 -11.56600 -11.50437 -11.41117 -11.09194 -10.59916 -10.26642 -10.12462 -9.80342 -8.26391 -6.39092 -0.77400 0.18431 1.10915 1.41353 1.45078 1.51728 1.61267 1.69483 1.89186 2.40406 2.60728 3.08126 3.23515 3.52744 3.70295 3.76908 3.99245 4.11023 4.14214 4.19836 4.21830 4.21925 4.23920 4.41506 4.48762 4.51012 4.57540 4.68191 4.76028 4.83602 4.88557 4.97106 5.02002 5.03551 5.07918 5.15798 5.25800 5.27757 5.38197 5.47820 5.48111 5.52121 5.59091 5.73689 6.07192 6.21751 6.60532 6.74077 6.95957 7.30327 8.85790 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.002222 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.480939 B =12596.841777 C =13546.078875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.084 3.916 5 C -0.182 4.182 6 C 0.556 3.444 7 O -0.569 6.569 8 C -0.105 4.105 9 C -0.104 4.104 10 C -0.065 4.065 11 C -0.112 4.112 12 C 0.499 3.501 13 O -0.536 6.536 14 O -0.354 6.354 15 C 0.090 3.910 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.971 3.029 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.062 4.062 26 C -0.078 4.078 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.268 0.732 44 H 0.146 0.854 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 -22.213 0.287 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.330 5.330 4 C -0.037 4.037 5 C -0.239 4.239 6 C 0.345 3.655 7 O -0.450 6.450 8 C -0.108 4.108 9 C -0.121 4.121 10 C -0.083 4.083 11 C -0.113 4.113 12 C 0.345 3.655 13 O -0.428 6.428 14 O -0.270 6.270 15 C 0.017 3.983 16 C -0.005 4.005 17 C -0.589 4.589 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.563 5.563 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.080 4.080 26 C -0.097 4.097 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.194 0.806 38 H 0.172 0.828 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.077 0.923 44 H 0.164 0.836 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.588 -22.282 0.869 27.208 hybrid contribution 0.491 1.206 0.209 1.319 sum -15.098 -21.076 1.079 25.948 Atomic orbital electron populations 1.22084 0.95246 1.03146 1.01668 1.21616 0.94933 0.80975 1.03952 1.48092 1.64222 1.14789 1.05856 1.22167 0.99419 0.98055 0.84100 1.22395 0.96016 1.03860 1.01655 1.18530 0.77525 0.85584 0.83907 1.90770 1.53642 1.68098 1.32463 1.20234 0.99075 0.93845 0.97640 1.22208 0.95116 0.96741 0.98070 1.21639 0.97845 0.92287 0.96548 1.19391 1.00788 0.90288 1.00835 1.21769 0.76748 0.89020 0.77984 1.90778 1.59627 1.53440 1.38915 1.86536 1.52370 1.35018 1.53071 1.23247 0.96954 0.77319 1.00792 1.18972 0.92375 0.96436 0.92691 1.21341 1.23669 0.97219 1.16711 0.91783 1.25924 0.96247 1.02489 0.94501 1.70070 1.30145 1.37476 1.18645 0.85411 0.78243 0.78713 0.78158 1.19220 1.20465 1.19099 1.21272 0.93443 0.96689 0.96588 1.21205 0.99687 0.91383 0.97414 0.91482 0.89950 0.94619 0.87317 0.91415 0.88017 0.89319 0.92204 0.90439 0.89425 0.80579 0.82837 0.91972 0.92147 0.97298 0.97122 0.92314 0.83617 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.24 71.98 0.74 -0.99 16 2 C 0.11 1.21 6.09 86.38 0.53 1.73 16 3 N -0.60 -8.40 2.48 -825.01 -2.04 -10.45 16 4 C 0.08 0.73 5.57 86.38 0.48 1.21 16 5 C -0.18 -1.19 8.62 71.98 0.62 -0.57 16 6 C 0.56 11.67 7.35 86.85 0.64 12.31 16 7 O -0.57 -16.07 16.48 -3.81 -0.06 -16.13 16 8 C -0.10 -2.11 5.16 -20.04 -0.10 -2.21 16 9 C -0.10 -1.82 7.43 22.49 0.17 -1.65 16 10 C -0.07 -1.44 9.60 22.50 0.22 -1.22 16 11 C -0.11 -3.04 5.88 -20.05 -0.12 -3.16 16 12 C 0.50 17.68 7.90 70.39 0.56 18.23 16 13 O -0.54 -21.45 16.12 20.02 0.32 -21.13 16 14 O -0.35 -13.88 9.46 -55.93 -0.53 -14.41 16 15 C 0.09 3.98 5.41 71.98 0.39 4.37 16 16 C 0.03 1.70 5.35 29.85 0.16 1.86 16 17 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.92 -54.27 13.29 21.45 0.28 -53.99 16 21 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.06 -1.47 9.58 22.50 0.22 -1.25 16 26 C -0.08 -1.65 9.60 22.49 0.22 -1.44 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.11 0.60 8.07 -2.38 -0.02 0.58 16 31 H 0.07 1.02 7.46 -2.38 -0.02 1.01 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.91 5.20 -2.39 -0.01 0.90 16 34 H 0.06 0.52 6.70 -2.39 -0.02 0.51 16 35 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.18 2.18 3.22 -2.91 -0.01 2.18 16 38 H 0.15 3.28 7.60 -2.91 -0.02 3.26 16 39 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.15 3.38 7.64 -2.91 -0.02 3.36 16 45 H 0.15 2.84 8.03 -2.91 -0.02 2.81 16 Total: -1.00 -71.36 378.42 6.39 -64.97 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.99 Total: 8.50 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 5.40 Total: -2.46 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -1.76 Total: -64.43 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.27 Total: -51.67 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.36 6.39 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729123013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.187 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds