Wall clock time and date at job start Tue Mar 31 2020 12:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47257 * 2 1 4 4 C 1.46495 * 120.00062 * 89.99270 * 3 2 1 5 5 C 1.34776 * 119.99857 * 269.99964 * 3 2 1 6 6 O 1.21551 * 120.00094 * 6.94901 * 5 3 2 7 7 C 1.47858 * 120.00043 * 186.95054 * 5 3 2 8 8 C 1.39707 * 120.07209 * 20.38880 * 7 5 3 9 9 C 1.38068 * 120.15611 * 179.72017 * 8 7 5 10 10 C 1.38083 * 120.30377 * 0.56062 * 9 8 7 11 11 C 1.39720 * 120.13852 * 359.71462 * 10 9 8 12 12 C 1.47739 * 120.07994 * 180.02562 * 11 10 9 13 13 O 1.21470 * 119.99834 * 179.97438 * 12 11 10 14 14 O 1.34699 * 120.00118 * 359.97438 * 12 11 10 15 15 C 1.45197 * 117.00311 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47632 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47480 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47275 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99709 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00012 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00056 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99943 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47251 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47001 * 120.00412 * 22 20 18 25 25 H 1.48502 * 109.47015 * 240.00471 * 22 20 18 26 26 C 1.39289 * 120.07300 * 200.66836 * 7 5 3 27 27 H 1.09007 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47567 * 300.00240 * 1 2 3 29 29 H 1.09004 * 109.47113 * 60.00224 * 1 2 3 30 30 H 1.09004 * 109.47113 * 119.99776 * 2 1 3 31 31 H 1.09003 * 109.47567 * 239.99760 * 2 1 3 32 32 H 1.09005 * 109.47086 * 86.39524 * 4 3 2 33 33 H 1.09000 * 109.47297 * 206.38870 * 4 3 2 34 34 H 1.08999 * 109.47720 * 326.39174 * 4 3 2 35 35 H 1.08006 * 119.92537 * 359.97438 * 8 7 5 36 36 H 1.07999 * 119.84877 * 180.25351 * 9 8 7 37 37 H 1.08004 * 119.93404 * 179.70130 * 10 9 8 38 38 H 1.08998 * 109.47220 * 300.00023 * 15 14 12 39 39 H 1.09005 * 109.46926 * 60.00087 * 15 14 12 40 40 H 1.08998 * 109.47081 * 300.00408 * 16 15 14 41 41 H 1.09005 * 109.46649 * 60.00217 * 16 15 14 42 42 H 1.08998 * 109.47266 * 300.00257 * 17 16 15 43 43 H 1.09001 * 109.46559 * 60.00387 * 17 16 15 44 44 H 0.97003 * 120.00204 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.14356 * 359.97006 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0719 1.2687 5 6 2.2429 2.0165 -1.1672 6 8 1.9225 1.4923 -2.2160 7 6 2.8792 3.3512 -1.1720 8 6 3.6234 3.7759 -0.0685 9 6 4.2231 5.0195 -0.0734 10 6 4.0825 5.8565 -1.1627 11 6 3.3363 5.4468 -2.2705 12 6 3.1872 6.3431 -3.4355 13 8 2.5385 5.9852 -4.3981 14 8 3.7706 7.5572 -3.4302 15 6 3.5824 8.3842 -4.6086 16 6 4.3122 9.7155 -4.4194 17 6 4.1133 10.5872 -5.6610 18 6 4.8327 11.8982 -5.4748 19 1 5.3777 12.0903 -4.5624 20 6 4.7961 12.8520 -6.4698 21 7 4.1329 12.6179 -7.5810 22 14 5.6885 14.4769 -6.2393 23 1 6.3546 14.4919 -4.9121 24 1 6.7086 14.6371 -7.3065 25 1 4.7120 15.5931 -6.3162 26 6 2.7331 4.1902 -2.2742 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.2712 1.8485 1.6158 33 1 2.1580 3.1470 1.1230 34 1 1.5395 1.7341 2.0113 35 1 3.7333 3.1282 0.7888 36 1 4.8007 5.3412 0.7806 37 1 4.5502 6.8300 -1.1582 38 1 3.9845 7.8699 -5.4815 39 1 2.5185 8.5711 -4.7552 40 1 3.9098 10.2297 -3.5467 41 1 5.3761 9.5289 -4.2727 42 1 4.5155 10.0733 -6.5340 43 1 3.0494 10.7737 -5.8072 44 1 4.1074 13.2888 -8.2812 45 1 2.1555 3.8682 -3.1281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729126012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:52 Heat of formation + Delta-G solvation = -87.336236 kcal Electronic energy + Delta-G solvation = -25331.833622 eV Core-core repulsion = 21507.982145 eV Total energy + Delta-G solvation = -3823.851477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05354 -40.17172 -38.48692 -36.50150 -36.34786 -34.01740 -32.97587 -31.73561 -31.48737 -30.67219 -27.64046 -27.18010 -24.96217 -24.61371 -23.07810 -22.60351 -21.17955 -20.39629 -19.95802 -18.08247 -17.23299 -17.12309 -16.53489 -16.38377 -16.31276 -16.01491 -15.71150 -14.93296 -14.66268 -14.46688 -14.18945 -14.16171 -13.94931 -13.74082 -13.38564 -13.16020 -12.99377 -12.65835 -12.42833 -12.22982 -12.10123 -11.95906 -11.80034 -11.52499 -11.48041 -10.99532 -10.68393 -10.65634 -10.46465 -10.41052 -10.25327 -9.74319 -9.52880 -9.46902 -9.39728 -9.18580 -9.15732 -8.39657 -6.04010 -4.07167 0.25463 0.67010 2.17905 2.39949 2.71793 2.80673 3.29668 3.37110 3.41141 3.48919 3.96741 4.26570 4.41817 4.43967 4.55819 4.59499 4.64528 4.76071 4.82691 4.89568 4.94568 4.97837 5.08153 5.22314 5.29544 5.32030 5.46761 5.49391 5.56998 5.61012 5.73980 5.78556 5.86242 5.93113 6.00281 6.02874 6.33551 6.44972 6.52517 6.80515 6.83259 6.96551 7.59903 7.70614 7.71507 7.85997 7.94297 8.35089 8.99304 9.57221 11.07430 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.036292 B = 0.001852 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.331195 B =15112.284884 C =15705.077307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.615 5.615 4 C 0.063 3.937 5 C 0.562 3.438 6 O -0.527 6.527 7 C -0.152 4.152 8 C -0.081 4.081 9 C -0.141 4.141 10 C -0.035 4.035 11 C -0.126 4.126 12 C 0.502 3.498 13 O -0.503 6.503 14 O -0.353 6.353 15 C 0.069 3.931 16 C -0.108 4.108 17 C 0.023 3.977 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.001 3.999 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 -24.561 23.270 33.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.349 5.349 4 C -0.080 4.080 5 C 0.351 3.649 6 O -0.403 6.403 7 C -0.155 4.155 8 C -0.099 4.099 9 C -0.159 4.159 10 C -0.053 4.053 11 C -0.127 4.127 12 C 0.346 3.654 13 O -0.392 6.392 14 O -0.269 6.269 15 C -0.004 4.004 16 C -0.146 4.146 17 C -0.014 4.014 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.018 4.018 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.358 -24.844 22.228 33.505 hybrid contribution 0.373 0.998 -0.066 1.068 sum -2.985 -23.846 22.163 32.691 Atomic orbital electron populations 1.22137 0.95647 1.02394 1.02589 1.21463 0.94742 0.81442 1.03263 1.47731 1.66636 1.14585 1.05977 1.22470 1.01146 0.98832 0.85529 1.18281 0.78172 0.85001 0.83440 1.90810 1.51229 1.67093 1.31172 1.19715 1.04096 0.95345 0.96308 1.22508 0.93308 0.96651 0.97414 1.21182 1.01199 0.94268 0.99227 1.21837 0.92556 0.99909 0.91020 1.19181 1.04187 0.94717 0.94590 1.20989 0.76716 0.81275 0.86401 1.90853 1.38189 1.75075 1.35128 1.86514 1.68431 1.26431 1.45552 1.23567 1.01841 0.90886 0.84120 1.21771 0.99374 0.91225 1.02225 1.19064 0.97672 0.93617 0.91074 1.21203 1.32162 1.00102 1.02480 0.92362 1.25036 0.95529 0.98742 0.95202 1.69975 1.41854 1.34896 1.06555 0.86490 0.79492 0.83577 0.78163 1.19684 1.20978 1.20977 1.21359 0.93261 0.90236 0.96900 0.91450 0.92583 0.91888 0.90329 0.89729 0.91671 0.89282 0.90906 0.82798 0.84272 0.83474 0.91299 0.91319 0.92098 0.92087 0.96170 0.96176 0.92934 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 37.15 0.38 -0.63 16 2 C 0.11 0.68 6.09 -4.04 -0.02 0.66 16 3 N -0.62 -4.41 2.87 -182.69 -0.52 -4.93 16 4 C 0.06 0.21 8.65 59.84 0.52 0.73 16 5 C 0.56 6.08 7.51 -12.32 -0.09 5.99 16 6 O -0.53 -7.71 16.18 5.32 0.09 -7.63 16 7 C -0.15 -1.52 5.56 -105.02 -0.58 -2.11 16 8 C -0.08 -0.54 7.61 -39.10 -0.30 -0.84 16 9 C -0.14 -0.95 10.02 -39.70 -0.40 -1.35 16 10 C -0.03 -0.33 9.61 -39.09 -0.38 -0.71 16 11 C -0.13 -1.59 5.87 -105.03 -0.62 -2.21 16 12 C 0.50 8.13 7.90 34.61 0.27 8.40 16 13 O -0.50 -9.59 16.13 -19.24 -0.31 -9.90 16 14 O -0.35 -5.89 9.46 -40.49 -0.38 -6.27 16 15 C 0.07 1.27 5.47 37.16 0.20 1.48 16 16 C -0.11 -2.23 5.53 -26.73 -0.15 -2.37 16 17 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 22 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.00 0.02 9.13 -38.76 -0.35 -0.34 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 31 H 0.08 0.64 7.53 -51.93 -0.39 0.25 16 32 H 0.07 0.10 6.99 -51.93 -0.36 -0.26 16 33 H 0.09 0.31 5.26 -51.93 -0.27 0.04 16 34 H 0.07 0.14 8.10 -51.93 -0.42 -0.28 16 35 H 0.15 0.54 4.02 -52.48 -0.21 0.33 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.15 1.31 7.60 -52.48 -0.40 0.91 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.15 2.09 7.37 -52.49 -0.39 1.71 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -34.92 379.84 -8.39 -43.31 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -6.63 Total: -4.40 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.07 Total: -6.29 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.21 Total: -31.04 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.61 Total: -23.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.92 -8.39 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729126012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.028 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds