Wall clock time and date at job start Tue Mar 31 2020 12:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47257 * 2 1 4 4 C 1.46495 * 120.00062 * 89.99270 * 3 2 1 5 5 C 1.34776 * 119.99857 * 269.99964 * 3 2 1 6 6 O 1.21551 * 120.00094 * 6.94901 * 5 3 2 7 7 C 1.47858 * 120.00043 * 186.95054 * 5 3 2 8 8 C 1.39707 * 120.07209 * 20.38880 * 7 5 3 9 9 C 1.38068 * 120.15611 * 179.72017 * 8 7 5 10 10 C 1.38083 * 120.30377 * 0.56062 * 9 8 7 11 11 C 1.39720 * 120.13852 * 359.71462 * 10 9 8 12 12 C 1.47739 * 120.07994 * 180.02562 * 11 10 9 13 13 O 1.21470 * 119.99834 * 179.97438 * 12 11 10 14 14 O 1.34699 * 120.00118 * 359.97438 * 12 11 10 15 15 C 1.45197 * 117.00311 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47632 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47480 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47275 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99709 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00012 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00056 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99943 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47251 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47001 * 120.00412 * 22 20 18 25 25 H 1.48502 * 109.47015 * 240.00471 * 22 20 18 26 26 C 1.39289 * 120.07300 * 200.66836 * 7 5 3 27 27 H 1.09007 * 109.47356 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47567 * 300.00240 * 1 2 3 29 29 H 1.09004 * 109.47113 * 60.00224 * 1 2 3 30 30 H 1.09004 * 109.47113 * 119.99776 * 2 1 3 31 31 H 1.09003 * 109.47567 * 239.99760 * 2 1 3 32 32 H 1.09005 * 109.47086 * 86.39524 * 4 3 2 33 33 H 1.09000 * 109.47297 * 206.38870 * 4 3 2 34 34 H 1.08999 * 109.47720 * 326.39174 * 4 3 2 35 35 H 1.08006 * 119.92537 * 359.97438 * 8 7 5 36 36 H 1.07999 * 119.84877 * 180.25351 * 9 8 7 37 37 H 1.08004 * 119.93404 * 179.70130 * 10 9 8 38 38 H 1.08998 * 109.47220 * 300.00023 * 15 14 12 39 39 H 1.09005 * 109.46926 * 60.00087 * 15 14 12 40 40 H 1.08998 * 109.47081 * 300.00408 * 16 15 14 41 41 H 1.09005 * 109.46649 * 60.00217 * 16 15 14 42 42 H 1.08998 * 109.47266 * 300.00257 * 17 16 15 43 43 H 1.09001 * 109.46559 * 60.00387 * 17 16 15 44 44 H 0.97003 * 120.00204 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.14356 * 359.97006 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0719 1.2687 5 6 2.2429 2.0165 -1.1672 6 8 1.9225 1.4923 -2.2160 7 6 2.8792 3.3512 -1.1720 8 6 3.6234 3.7759 -0.0685 9 6 4.2231 5.0195 -0.0734 10 6 4.0825 5.8565 -1.1627 11 6 3.3363 5.4468 -2.2705 12 6 3.1872 6.3431 -3.4355 13 8 2.5385 5.9852 -4.3981 14 8 3.7706 7.5572 -3.4302 15 6 3.5824 8.3842 -4.6086 16 6 4.3122 9.7155 -4.4194 17 6 4.1133 10.5872 -5.6610 18 6 4.8327 11.8982 -5.4748 19 1 5.3777 12.0903 -4.5624 20 6 4.7961 12.8520 -6.4698 21 7 4.1329 12.6179 -7.5810 22 14 5.6885 14.4769 -6.2393 23 1 6.3546 14.4919 -4.9121 24 1 6.7086 14.6371 -7.3065 25 1 4.7120 15.5931 -6.3162 26 6 2.7331 4.1902 -2.2742 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.2712 1.8485 1.6158 33 1 2.1580 3.1470 1.1230 34 1 1.5395 1.7341 2.0113 35 1 3.7333 3.1282 0.7888 36 1 4.8007 5.3412 0.7806 37 1 4.5502 6.8300 -1.1582 38 1 3.9845 7.8699 -5.4815 39 1 2.5185 8.5711 -4.7552 40 1 3.9098 10.2297 -3.5467 41 1 5.3761 9.5289 -4.2727 42 1 4.5155 10.0733 -6.5340 43 1 3.0494 10.7737 -5.8072 44 1 4.1074 13.2888 -8.2812 45 1 2.1555 3.8682 -3.1281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729126012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:51 Heat of formation + Delta-G solvation = -108.053663 kcal Electronic energy + Delta-G solvation = -25332.731997 eV Core-core repulsion = 21507.982145 eV Total energy + Delta-G solvation = -3824.749852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94232 -41.29924 -39.33336 -37.86333 -37.09726 -35.95876 -33.89400 -33.44200 -32.27893 -31.34513 -29.07151 -28.06401 -26.10227 -25.44787 -24.61934 -23.30100 -22.23615 -22.13447 -20.80431 -19.06248 -18.69349 -18.10653 -17.86149 -17.74757 -17.21003 -16.91968 -16.53661 -16.48054 -15.73697 -15.68034 -15.36539 -14.83636 -14.80297 -14.54565 -14.30632 -14.14409 -14.02751 -13.80355 -13.69378 -13.58286 -13.16209 -12.91458 -12.85692 -12.67329 -12.50019 -12.39841 -12.18245 -12.13088 -11.96958 -11.83811 -11.48604 -11.45646 -11.23909 -11.05172 -10.58480 -10.21803 -10.17765 -9.74049 -8.21891 -6.33699 -0.54940 -0.15827 1.25032 1.40164 1.42322 1.44072 1.56284 1.75410 1.93682 2.41461 2.67333 3.12210 3.32608 3.44289 3.75174 3.87771 3.96571 4.00032 4.03650 4.10684 4.18735 4.25660 4.31368 4.36632 4.49681 4.53418 4.63737 4.77473 4.78060 4.80652 4.81933 4.91043 4.96491 5.05687 5.07564 5.16682 5.18959 5.27133 5.32684 5.48921 5.50728 5.62580 5.67167 5.79651 6.18086 6.22890 6.54033 6.82659 6.99236 7.36063 8.90612 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.036292 B = 0.001852 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.331195 B =15112.284884 C =15705.077307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.607 5.607 4 C 0.048 3.952 5 C 0.552 3.448 6 O -0.583 6.583 7 C -0.159 4.159 8 C -0.054 4.054 9 C -0.122 4.122 10 C -0.033 4.033 11 C -0.148 4.148 12 C 0.501 3.499 13 O -0.545 6.545 14 O -0.344 6.344 15 C 0.077 3.923 16 C -0.091 4.091 17 C 0.023 3.977 18 C -0.541 4.541 19 H 0.068 0.932 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.971 3.029 23 H -0.257 1.257 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.019 4.019 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.198 0.802 36 H 0.188 0.812 37 H 0.157 0.843 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.071 0.929 42 H -0.005 1.005 43 H -0.004 1.004 44 H 0.264 0.736 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -24.678 28.340 37.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.014 4.014 3 N -0.338 5.338 4 C -0.092 4.092 5 C 0.342 3.658 6 O -0.465 6.465 7 C -0.163 4.163 8 C -0.071 4.071 9 C -0.139 4.139 10 C -0.051 4.051 11 C -0.150 4.150 12 C 0.347 3.653 13 O -0.437 6.437 14 O -0.260 6.260 15 C 0.003 3.997 16 C -0.128 4.128 17 C -0.014 4.014 18 C -0.579 4.579 19 H 0.086 0.914 20 C -0.201 4.201 21 N -0.575 5.575 22 Si 0.795 3.205 23 H -0.181 1.181 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.038 4.038 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.215 0.785 36 H 0.205 0.795 37 H 0.175 0.825 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.073 0.927 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.389 -24.973 27.377 37.082 hybrid contribution -0.280 0.903 -1.519 1.789 sum -1.668 -24.071 25.858 35.367 Atomic orbital electron populations 1.22101 0.95732 1.03044 1.01474 1.21625 0.94688 0.81039 1.04006 1.47876 1.64837 1.14864 1.06238 1.22840 1.03853 0.98658 0.83875 1.18553 0.78112 0.85307 0.83874 1.90780 1.53819 1.68427 1.33437 1.19762 1.05001 0.94738 0.96752 1.23024 0.90253 0.97004 0.96823 1.21694 0.99912 0.93136 0.99143 1.22062 0.91513 1.00873 0.90629 1.18995 1.07089 0.94235 0.94636 1.21745 0.75474 0.80940 0.87098 1.90829 1.40141 1.75666 1.37020 1.86488 1.68590 1.26740 1.44215 1.23218 1.01104 0.90565 0.84770 1.21454 1.00242 0.91225 0.99917 1.18960 0.95742 0.94078 0.92604 1.21654 1.32307 1.01010 1.02923 0.91354 1.26047 0.96324 1.02978 0.94767 1.70117 1.43373 1.36426 1.07591 0.85307 0.78148 0.78311 0.78716 1.18109 1.20518 1.20474 1.21158 0.94231 0.91153 0.97282 0.90030 0.91095 0.95438 0.86389 0.92072 0.88370 0.89146 0.88577 0.78537 0.79526 0.82510 0.92061 0.91968 0.90999 0.91073 0.98626 0.98570 0.92731 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 71.98 0.74 -1.10 16 2 C 0.11 1.14 6.09 86.38 0.53 1.66 16 3 N -0.61 -7.44 2.87 -850.19 -2.44 -9.88 16 4 C 0.05 0.09 8.65 127.77 1.10 1.20 16 5 C 0.55 12.08 7.51 86.79 0.65 12.73 16 6 O -0.58 -18.71 16.18 -3.88 -0.06 -18.77 16 7 C -0.16 -3.10 5.56 -20.12 -0.11 -3.21 16 8 C -0.05 -0.49 7.61 22.58 0.17 -0.32 16 9 C -0.12 -1.04 10.02 22.19 0.22 -0.82 16 10 C -0.03 -0.55 9.61 22.59 0.22 -0.33 16 11 C -0.15 -3.84 5.87 -20.13 -0.12 -3.96 16 12 C 0.50 17.11 7.90 70.33 0.56 17.67 16 13 O -0.54 -22.60 16.13 19.93 0.32 -22.28 16 14 O -0.34 -11.68 9.46 -56.09 -0.53 -12.21 16 15 C 0.08 2.96 5.47 71.98 0.39 3.36 16 16 C -0.09 -3.76 5.53 30.59 0.17 -3.59 16 17 C 0.02 1.24 4.97 29.85 0.15 1.39 16 18 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 19 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 20 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 21 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 22 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 C -0.02 -0.50 9.13 22.80 0.21 -0.29 16 27 H 0.08 0.65 8.14 -2.38 -0.02 0.64 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.12 0.34 8.07 -2.39 -0.02 0.32 16 31 H 0.06 0.95 7.53 -2.39 -0.02 0.93 16 32 H 0.10 -0.37 6.99 -2.38 -0.02 -0.38 16 33 H 0.09 0.19 5.26 -2.39 -0.01 0.17 16 34 H 0.10 -0.15 8.10 -2.39 -0.02 -0.17 16 35 H 0.20 0.12 4.02 -2.91 -0.01 0.10 16 36 H 0.19 -0.01 8.06 -2.91 -0.02 -0.03 16 37 H 0.16 2.33 7.60 -2.91 -0.02 2.30 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 42 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.11 3.74 7.37 -2.91 -0.02 3.72 16 Total: -1.00 -83.12 379.84 6.16 -76.96 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 0.99 Total: 2.97 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.57 Total: -5.71 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -2.16 Total: -66.98 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.27 Total: -53.26 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -83.12 6.16 -76.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729126012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.090 kcal (2) G-P(sol) polarization free energy of solvation -83.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds