Wall clock time and date at job start Tue Mar 31 2020 12:12:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46894 * 109.47024 * 2 1
4 4 C 1.47011 * 111.03901 * 287.40915 * 3 2 1
5 5 C 1.53100 * 109.29717 * 177.64922 * 4 3 2
6 6 O 1.43017 * 109.25572 * 56.82538 * 5 4 3
7 7 C 1.43020 * 113.74099 * 301.33005 * 6 5 4
8 8 C 1.47018 * 111.00048 * 163.74878 * 3 2 1
9 9 H 1.09002 * 109.50516 * 62.41705 * 8 3 2
10 10 C 1.50698 * 109.50559 * 302.33069 * 8 3 2
11 11 O 1.20826 * 120.00345 * 326.19722 * 10 8 3
12 12 O 1.34230 * 120.00060 * 146.47615 * 10 8 3
13 13 C 1.45203 * 117.00094 * 179.72570 * 12 10 8
14 14 C 1.50694 * 109.47065 * 179.97438 * 13 12 10
15 15 C 1.38643 * 119.74643 * 269.72152 * 14 13 12
16 16 C 1.37617 * 120.24596 * 179.76280 * 15 14 13
17 17 C 1.40717 * 119.74565 * 0.48720 * 16 15 14
18 18 C 1.41403 * 120.24329 * 179.78608 * 17 16 15
19 19 H 1.08003 * 119.99606 * 203.90831 * 18 17 16
20 20 C 1.39933 * 119.99820 * 23.91057 * 18 17 16
21 21 N 1.30826 * 120.00748 * 16.27913 * 20 18 17
22 22 Si 1.86804 * 120.00011 * 196.27995 * 20 18 17
23 23 H 1.48504 * 109.47141 * 89.99776 * 22 20 18
24 24 H 1.48498 * 109.47462 * 209.99880 * 22 20 18
25 25 H 1.48506 * 109.47134 * 330.00436 * 22 20 18
26 26 C 1.40711 * 119.51210 * 359.77169 * 17 16 15
27 27 C 1.37622 * 119.74653 * 359.97438 * 26 17 16
28 28 H 1.08992 * 109.47333 * 299.99726 * 1 2 3
29 29 H 1.08999 * 109.46932 * 59.99907 * 1 2 3
30 30 H 1.09007 * 109.46913 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46992 * 240.00010 * 2 1 3
32 32 H 1.08997 * 109.47411 * 120.00303 * 2 1 3
33 33 H 1.09000 * 109.50657 * 57.69241 * 4 3 2
34 34 H 1.09001 * 109.50738 * 297.60505 * 4 3 2
35 35 H 1.08998 * 109.50440 * 296.89652 * 5 4 3
36 36 H 1.08995 * 109.54425 * 176.78010 * 5 4 3
37 37 H 1.08991 * 109.50805 * 298.74022 * 7 6 5
38 38 H 1.08999 * 109.50802 * 178.60289 * 7 6 5
39 39 H 1.09006 * 109.47019 * 299.99599 * 13 12 10
40 40 H 1.08998 * 109.47466 * 59.99435 * 13 12 10
41 41 H 1.07993 * 119.87686 * 0.02562 * 15 14 13
42 42 H 1.07998 * 120.12942 * 180.27555 * 16 15 14
43 43 H 0.96997 * 120.00599 * 179.97438 * 21 20 18
44 44 H 1.07999 * 120.12935 * 179.97438 * 26 17 16
45 45 H 1.07996 * 119.87953 * 180.02562 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3849 0.0000
4 6 1.8085 2.0194 -1.3093
5 6 2.2779 3.4753 -1.2475
6 8 3.6491 3.5121 -0.8429
7 6 3.8907 2.9042 0.4289
8 6 3.4376 1.4425 0.3841
9 1 4.0352 0.8985 -0.3474
10 6 3.6162 0.8183 1.7441
11 8 2.7461 0.9228 2.5758
12 8 4.7444 0.1511 2.0333
13 6 4.8504 -0.4188 3.3647
14 6 6.1742 -1.1250 3.5049
15 6 6.2751 -2.4686 3.1779
16 6 7.4801 -3.1225 3.2974
17 6 8.6098 -2.4248 3.7632
18 6 9.8521 -3.0875 3.8944
19 1 10.5949 -2.7110 4.5821
20 6 10.1189 -4.2308 3.1330
21 7 9.3815 -4.5082 2.0886
22 14 11.5281 -5.3614 3.6080
23 1 11.0333 -6.4028 4.5439
24 1 12.0745 -6.0103 2.3893
25 1 12.5967 -4.5696 4.2688
26 6 8.4943 -1.0628 4.0973
27 6 7.2806 -0.4278 3.9649
28 1 -0.3633 0.5137 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 0.7486 1.9891 -1.5617
34 1 2.3790 1.4850 -2.0689
35 1 1.6710 4.0231 -0.5267
36 1 2.1764 3.9332 -2.2314
37 1 3.3306 3.4353 1.1984
38 1 4.9556 2.9483 0.6571
39 1 4.7821 0.3766 4.1069
40 1 4.0404 -1.1314 3.5204
41 1 5.4059 -3.0029 2.8240
42 1 7.5576 -4.1679 3.0379
43 1 9.5667 -5.3006 1.5607
44 1 9.3549 -0.5178 4.4562
45 1 7.1896 0.6176 4.2203
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000751500676.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:12:18
Heat of formation + Delta-G solvation = -106.310904 kcal
Electronic energy + Delta-G solvation = -26548.901814 eV
Core-core repulsion = 22724.227534 eV
Total energy + Delta-G solvation = -3824.674280 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.80368 -39.26527 -37.69114 -36.52698 -35.84082 -33.90127 -32.15250 -31.14934
-30.74743 -29.38988 -27.46619 -26.86483 -25.27764 -23.77735 -22.34750 -21.72213
-21.10807 -20.08375 -20.05024 -17.71295 -17.41903 -17.04972 -16.85445 -15.99874
-15.72106 -15.40286 -15.37755 -15.03773 -14.58950 -14.42544 -13.99945 -13.90760
-13.59050 -13.47995 -12.78442 -12.60304 -12.36065 -12.30171 -12.15456 -12.05537
-11.92965 -11.75779 -11.64645 -11.21719 -11.13604 -11.02031 -10.88593 -10.81619
-10.47351 -10.30176 -10.19079 -9.92737 -9.71581 -9.48895 -9.26206 -8.71220
-7.59219 -7.47328 -6.87399 -4.49472 2.27623 2.35432 2.86359 2.98544
3.01512 3.04243 3.19865 3.40129 3.74459 3.83816 4.46476 4.48030
4.62120 4.70687 4.81275 4.90666 5.01270 5.10740 5.15560 5.26882
5.29507 5.40290 5.47794 5.58366 5.61829 5.62948 5.64494 5.66734
5.76226 6.01679 6.03566 6.22363 6.28510 6.52641 6.61989 6.74710
6.82528 6.85579 6.95081 7.16298 7.25079 7.49144 7.71469 7.93693
7.98623 8.03189 8.16941 8.51996 8.76487 8.84418 10.05170
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.021057 B = 0.002511 C = 0.002478
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.403603 B =11148.643832 C =11298.236224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.045 3.955
3 N -0.518 5.518
4 C 0.019 3.981
5 C 0.059 3.941
6 O -0.375 6.375
7 C 0.078 3.922
8 C 0.054 3.946
9 H 0.083 0.917
10 C 0.461 3.539
11 O -0.496 6.496
12 O -0.350 6.350
13 C 0.137 3.863
14 C -0.237 4.237
15 C -0.076 4.076
16 C -0.170 4.170
17 C 0.117 3.883
18 C -0.454 4.454
19 H 0.080 0.920
20 C 0.074 3.926
21 N -0.786 5.786
22 Si 0.912 3.088
23 H -0.267 1.267
24 H -0.277 1.277
25 H -0.261 1.261
26 C -0.230 4.230
27 C -0.063 4.063
28 H 0.066 0.934
29 H 0.053 0.947
30 H 0.060 0.940
31 H 0.040 0.960
32 H 0.076 0.924
33 H 0.094 0.906
34 H 0.048 0.952
35 H 0.063 0.937
36 H 0.102 0.898
37 H 0.069 0.931
38 H 0.111 0.889
39 H 0.062 0.938
40 H 0.061 0.939
41 H 0.088 0.912
42 H 0.123 0.877
43 H 0.283 0.717
44 H 0.095 0.905
45 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.875 8.886 -6.865 17.084
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.083 4.083
3 N -0.246 5.246
4 C -0.109 4.109
5 C -0.018 4.018
6 O -0.293 6.293
7 C 0.001 3.999
8 C -0.056 4.056
9 H 0.101 0.899
10 C 0.302 3.698
11 O -0.383 6.383
12 O -0.266 6.266
13 C 0.065 3.935
14 C -0.238 4.238
15 C -0.095 4.095
16 C -0.190 4.190
17 C 0.114 3.886
18 C -0.483 4.483
19 H 0.099 0.901
20 C -0.145 4.145
21 N -0.411 5.411
22 Si 0.736 3.264
23 H -0.192 1.192
24 H -0.202 1.202
25 H -0.185 1.185
26 C -0.249 4.249
27 C -0.082 4.082
28 H 0.085 0.915
29 H 0.072 0.928
30 H 0.079 0.921
31 H 0.058 0.942
32 H 0.095 0.905
33 H 0.112 0.888
34 H 0.066 0.934
35 H 0.081 0.919
36 H 0.120 0.880
37 H 0.088 0.912
38 H 0.129 0.871
39 H 0.080 0.920
40 H 0.079 0.921
41 H 0.106 0.894
42 H 0.141 0.859
43 H 0.094 0.906
44 H 0.113 0.887
45 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -13.240 9.058 -6.535 17.323
hybrid contribution 0.784 -1.272 -0.280 1.520
sum -12.457 7.786 -6.816 16.194
Atomic orbital electron populations
1.21708 0.94070 1.01689 1.02440 1.22210 0.96994 0.87706 1.01350
1.62049 1.14839 1.18925 1.28768 1.22889 1.02595 0.95986 0.89431
1.22747 0.82921 0.94977 1.01132 1.88049 1.26280 1.78743 1.36225
1.22557 1.02409 0.88520 0.86428 1.21944 0.91247 0.99001 0.93359
0.89911 1.23034 0.80726 0.76602 0.89450 1.90638 1.42468 1.56291
1.48919 1.86745 1.38596 1.63161 1.38083 1.21758 0.97017 0.95639
0.79075 1.18674 0.93500 0.94691 1.16954 1.20542 0.96912 0.93510
0.98519 1.21362 0.91138 1.00340 1.06114 1.17703 0.92888 0.90406
0.87561 1.19704 1.00489 1.07898 1.20174 0.90145 1.25982 0.97646
0.97600 0.93291 1.69815 1.36087 1.23966 1.11210 0.86245 0.80926
0.80153 0.79054 1.19155 1.20186 1.18493 1.20967 0.96158 0.95078
1.12719 1.20388 0.92755 0.96925 0.98110 0.91511 0.92823 0.92107
0.94218 0.90530 0.88777 0.93414 0.91883 0.88020 0.91250 0.87059
0.91971 0.92067 0.89416 0.85939 0.90635 0.88683 0.89265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.34 9.97 37.16 0.37 -0.97 16
2 C 0.04 0.52 5.41 -3.83 -0.02 0.50 16
3 N -0.52 -6.17 4.25 -227.73 -0.97 -7.14 16
4 C 0.02 0.17 5.47 -3.71 -0.02 0.15 16
5 C 0.06 0.52 7.01 37.21 0.26 0.78 16
6 O -0.37 -4.34 10.83 -35.23 -0.38 -4.72 16
7 C 0.08 0.93 6.28 37.21 0.23 1.17 16
8 C 0.05 0.72 2.48 -68.75 -0.17 0.55 16
9 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
10 C 0.46 7.49 5.64 36.00 0.20 7.69 16
11 O -0.50 -8.96 15.76 -18.75 -0.30 -9.25 16
12 O -0.35 -6.43 10.20 -39.26 -0.40 -6.84 16
13 C 0.14 2.59 5.58 36.00 0.20 2.79 16
14 C -0.24 -5.19 5.54 -104.33 -0.58 -5.76 16
15 C -0.08 -1.76 9.67 -39.66 -0.38 -2.15 16
16 C -0.17 -4.34 8.70 -38.87 -0.34 -4.67 16
17 C 0.12 3.05 5.59 -106.82 -0.60 2.46 16
18 C -0.45 -11.68 9.07 -37.74 -0.34 -12.02 16
19 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16
20 C 0.07 1.79 5.18 -17.35 -0.09 1.70 16
21 N -0.79 -19.73 10.83 55.55 0.60 -19.13 16
22 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16
23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16
24 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16
25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16
26 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16
27 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16
28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
29 H 0.05 0.42 6.75 -51.93 -0.35 0.07 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.04 0.43 8.04 -51.93 -0.42 0.01 16
32 H 0.08 1.06 6.14 -51.93 -0.32 0.75 16
33 H 0.09 0.68 6.66 -51.93 -0.35 0.34 16
34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
38 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16
40 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16
41 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16
42 H 0.12 3.21 6.06 -52.49 -0.32 2.89 16
43 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16
44 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16
45 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16
LS Contribution 369.11 15.07 5.56 5.56
Total: -1.00 -28.56 369.11 -9.74 -38.30
By element:
Atomic # 1 Polarization: 12.47 SS G_CDS: -6.79 Total: 5.68 kcal
Atomic # 6 Polarization: -13.46 SS G_CDS: -2.04 Total: -15.49 kcal
Atomic # 7 Polarization: -25.90 SS G_CDS: -0.37 Total: -26.26 kcal
Atomic # 8 Polarization: -19.73 SS G_CDS: -1.08 Total: -20.81 kcal
Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -28.56 -9.74 -38.30 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000751500676.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.012 kcal
(2) G-P(sol) polarization free energy of solvation -28.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.311 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds