Wall clock time and date at job start Tue Mar 31 2020 12:12:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46894 * 109.47024 * 2 1
4 4 C 1.47011 * 111.03901 * 287.40915 * 3 2 1
5 5 C 1.53100 * 109.29717 * 177.64922 * 4 3 2
6 6 O 1.43017 * 109.25572 * 56.82538 * 5 4 3
7 7 C 1.43020 * 113.74099 * 301.33005 * 6 5 4
8 8 C 1.47018 * 111.00048 * 163.74878 * 3 2 1
9 9 H 1.09002 * 109.50516 * 62.41705 * 8 3 2
10 10 C 1.50698 * 109.50559 * 302.33069 * 8 3 2
11 11 O 1.20826 * 120.00345 * 326.19722 * 10 8 3
12 12 O 1.34230 * 120.00060 * 146.47615 * 10 8 3
13 13 C 1.45203 * 117.00094 * 179.72570 * 12 10 8
14 14 C 1.50694 * 109.47065 * 179.97438 * 13 12 10
15 15 C 1.38643 * 119.74643 * 269.72152 * 14 13 12
16 16 C 1.37617 * 120.24596 * 179.76280 * 15 14 13
17 17 C 1.40717 * 119.74565 * 0.48720 * 16 15 14
18 18 C 1.41403 * 120.24329 * 179.78608 * 17 16 15
19 19 H 1.08003 * 119.99606 * 203.90831 * 18 17 16
20 20 C 1.39933 * 119.99820 * 23.91057 * 18 17 16
21 21 N 1.30826 * 120.00748 * 16.27913 * 20 18 17
22 22 Si 1.86804 * 120.00011 * 196.27995 * 20 18 17
23 23 H 1.48504 * 109.47141 * 89.99776 * 22 20 18
24 24 H 1.48498 * 109.47462 * 209.99880 * 22 20 18
25 25 H 1.48506 * 109.47134 * 330.00436 * 22 20 18
26 26 C 1.40711 * 119.51210 * 359.77169 * 17 16 15
27 27 C 1.37622 * 119.74653 * 359.97438 * 26 17 16
28 28 H 1.08992 * 109.47333 * 299.99726 * 1 2 3
29 29 H 1.08999 * 109.46932 * 59.99907 * 1 2 3
30 30 H 1.09007 * 109.46913 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46992 * 240.00010 * 2 1 3
32 32 H 1.08997 * 109.47411 * 120.00303 * 2 1 3
33 33 H 1.09000 * 109.50657 * 57.69241 * 4 3 2
34 34 H 1.09001 * 109.50738 * 297.60505 * 4 3 2
35 35 H 1.08998 * 109.50440 * 296.89652 * 5 4 3
36 36 H 1.08995 * 109.54425 * 176.78010 * 5 4 3
37 37 H 1.08991 * 109.50805 * 298.74022 * 7 6 5
38 38 H 1.08999 * 109.50802 * 178.60289 * 7 6 5
39 39 H 1.09006 * 109.47019 * 299.99599 * 13 12 10
40 40 H 1.08998 * 109.47466 * 59.99435 * 13 12 10
41 41 H 1.07993 * 119.87686 * 0.02562 * 15 14 13
42 42 H 1.07998 * 120.12942 * 180.27555 * 16 15 14
43 43 H 0.96997 * 120.00599 * 179.97438 * 21 20 18
44 44 H 1.07999 * 120.12935 * 179.97438 * 26 17 16
45 45 H 1.07996 * 119.87953 * 180.02562 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3849 0.0000
4 6 1.8085 2.0194 -1.3093
5 6 2.2779 3.4753 -1.2475
6 8 3.6491 3.5121 -0.8429
7 6 3.8907 2.9042 0.4289
8 6 3.4376 1.4425 0.3841
9 1 4.0352 0.8985 -0.3474
10 6 3.6162 0.8183 1.7441
11 8 2.7461 0.9228 2.5758
12 8 4.7444 0.1511 2.0333
13 6 4.8504 -0.4188 3.3647
14 6 6.1742 -1.1250 3.5049
15 6 6.2751 -2.4686 3.1779
16 6 7.4801 -3.1225 3.2974
17 6 8.6098 -2.4248 3.7632
18 6 9.8521 -3.0875 3.8944
19 1 10.5949 -2.7110 4.5821
20 6 10.1189 -4.2308 3.1330
21 7 9.3815 -4.5082 2.0886
22 14 11.5281 -5.3614 3.6080
23 1 11.0333 -6.4028 4.5439
24 1 12.0745 -6.0103 2.3893
25 1 12.5967 -4.5696 4.2688
26 6 8.4943 -1.0628 4.0973
27 6 7.2806 -0.4278 3.9649
28 1 -0.3633 0.5137 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8899
33 1 0.7486 1.9891 -1.5617
34 1 2.3790 1.4850 -2.0689
35 1 1.6710 4.0231 -0.5267
36 1 2.1764 3.9332 -2.2314
37 1 3.3306 3.4353 1.1984
38 1 4.9556 2.9483 0.6571
39 1 4.7821 0.3766 4.1069
40 1 4.0404 -1.1314 3.5204
41 1 5.4059 -3.0029 2.8240
42 1 7.5576 -4.1679 3.0379
43 1 9.5667 -5.3006 1.5607
44 1 9.3549 -0.5178 4.4562
45 1 7.1896 0.6176 4.2203
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000751500676.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:12:18
Heat of formation + Delta-G solvation = -121.919528 kcal
Electronic energy + Delta-G solvation = -26549.578655 eV
Core-core repulsion = 22724.227534 eV
Total energy + Delta-G solvation = -3825.351121 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.99461 -40.37202 -39.44199 -37.69937 -37.02078 -35.70862 -33.20156 -32.44476
-31.92057 -31.24278 -29.07710 -27.80696 -26.43550 -25.32600 -23.20926 -22.98232
-22.80195 -21.84457 -21.11659 -19.29159 -18.97000 -18.19021 -17.93060 -17.29851
-16.98718 -16.83311 -16.29654 -16.03344 -15.98150 -15.67885 -15.45390 -15.27463
-14.85784 -14.58667 -14.27865 -13.92545 -13.86073 -13.76903 -13.54272 -13.26786
-12.98715 -12.86018 -12.80204 -12.70723 -12.60849 -12.45482 -12.13689 -12.01972
-11.72485 -11.70543 -11.57986 -11.41106 -11.30169 -11.07387 -10.82741 -9.60451
-9.46090 -9.34664 -8.68748 -6.41942 0.68453 0.99972 1.09770 1.37217
1.40879 1.51686 1.73553 2.18451 2.49860 2.66920 2.89261 3.52503
3.57323 3.75299 3.82040 3.84219 3.97401 4.05048 4.07716 4.19076
4.28326 4.33828 4.44707 4.45342 4.47364 4.53351 4.54351 4.57491
4.70628 4.88176 4.90223 4.98456 4.99321 5.10159 5.25679 5.29199
5.37418 5.40451 5.62300 5.63263 5.79646 5.86521 5.98735 6.04357
6.12762 6.30180 6.63017 6.68279 6.87106 6.95531 8.26670
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.021057 B = 0.002511 C = 0.002478
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.403603 B =11148.643832 C =11298.236224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.042 3.958
3 N -0.527 5.527
4 C 0.019 3.981
5 C 0.054 3.946
6 O -0.386 6.386
7 C 0.083 3.917
8 C 0.059 3.941
9 H 0.081 0.919
10 C 0.466 3.534
11 O -0.514 6.514
12 O -0.362 6.362
13 C 0.142 3.858
14 C -0.232 4.232
15 C -0.082 4.082
16 C -0.194 4.194
17 C 0.086 3.914
18 C -0.490 4.490
19 H 0.080 0.920
20 C 0.033 3.967
21 N -0.819 5.819
22 Si 0.986 3.014
23 H -0.262 1.262
24 H -0.267 1.267
25 H -0.257 1.257
26 C -0.244 4.244
27 C -0.064 4.064
28 H 0.053 0.947
29 H 0.073 0.927
30 H 0.069 0.931
31 H 0.047 0.953
32 H 0.047 0.953
33 H 0.117 0.883
34 H 0.049 0.951
35 H 0.066 0.934
36 H 0.130 0.870
37 H 0.068 0.932
38 H 0.114 0.886
39 H 0.076 0.924
40 H 0.067 0.933
41 H 0.104 0.896
42 H 0.107 0.893
43 H 0.290 0.710
44 H 0.104 0.896
45 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.839 9.847 -7.823 18.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.085 4.085
3 N -0.255 5.255
4 C -0.108 4.108
5 C -0.022 4.022
6 O -0.304 6.304
7 C 0.005 3.995
8 C -0.051 4.051
9 H 0.099 0.901
10 C 0.308 3.692
11 O -0.402 6.402
12 O -0.279 6.279
13 C 0.070 3.930
14 C -0.233 4.233
15 C -0.100 4.100
16 C -0.213 4.213
17 C 0.084 3.916
18 C -0.519 4.519
19 H 0.098 0.902
20 C -0.182 4.182
21 N -0.444 5.444
22 Si 0.807 3.193
23 H -0.186 1.186
24 H -0.192 1.192
25 H -0.181 1.181
26 C -0.264 4.264
27 C -0.082 4.082
28 H 0.072 0.928
29 H 0.092 0.908
30 H 0.088 0.912
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.135 0.865
34 H 0.067 0.933
35 H 0.084 0.916
36 H 0.148 0.852
37 H 0.086 0.914
38 H 0.132 0.868
39 H 0.094 0.906
40 H 0.085 0.915
41 H 0.122 0.878
42 H 0.125 0.875
43 H 0.101 0.899
44 H 0.122 0.878
45 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -14.226 10.041 -7.506 18.961
hybrid contribution 0.908 -1.456 -0.038 1.716
sum -13.319 8.584 -7.545 17.550
Atomic orbital electron populations
1.21663 0.92315 1.02455 1.02757 1.22234 0.98435 0.87566 1.00270
1.62128 1.13583 1.19153 1.30667 1.23029 1.04107 0.95819 0.87862
1.23008 0.81541 0.94979 1.02675 1.88042 1.28123 1.78507 1.35766
1.22502 1.02599 0.87492 0.86879 1.21970 0.92489 0.99501 0.91131
0.90131 1.23568 0.79566 0.75683 0.90373 1.90625 1.42807 1.56971
1.49829 1.86702 1.39922 1.63737 1.37502 1.21598 0.95370 0.96133
0.79901 1.18984 0.94801 0.94359 1.15138 1.20774 0.96725 0.94373
0.98137 1.21331 0.92175 0.99971 1.07836 1.18063 0.93442 0.91571
0.88549 1.19955 1.00833 1.09677 1.21417 0.90160 1.26841 1.00275
0.98463 0.92670 1.69866 1.37773 1.24735 1.12046 0.85137 0.77457
0.77826 0.78917 1.18619 1.19182 1.18054 1.21184 0.97449 0.94662
1.13074 1.20714 0.92047 0.98340 0.97145 0.92809 0.90770 0.91200
0.93468 0.93406 0.86459 0.93260 0.91555 0.85209 0.91373 0.86769
0.90571 0.91480 0.87794 0.87482 0.89892 0.87820 0.86268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.28 9.97 71.98 0.72 -1.56 16
2 C 0.04 0.93 5.41 86.31 0.47 1.40 16
3 N -0.53 -11.68 4.25 -874.40 -3.71 -15.39 16
4 C 0.02 0.29 5.47 86.32 0.47 0.76 16
5 C 0.05 0.80 7.01 72.02 0.50 1.30 16
6 O -0.39 -8.15 10.83 -148.98 -1.61 -9.76 16
7 C 0.08 1.86 6.28 72.02 0.45 2.32 16
8 C 0.06 1.50 2.48 44.18 0.11 1.61 16
9 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
10 C 0.47 14.78 5.64 71.24 0.40 15.18 16
11 O -0.51 -18.21 15.76 21.96 0.35 -17.86 16
12 O -0.36 -13.03 10.20 -51.42 -0.52 -13.55 16
13 C 0.14 5.21 5.58 71.23 0.40 5.61 16
14 C -0.23 -10.02 5.54 -19.67 -0.11 -10.13 16
15 C -0.08 -3.82 9.67 22.22 0.21 -3.61 16
16 C -0.19 -10.20 8.70 22.73 0.20 -10.00 16
17 C 0.09 4.64 5.59 -21.29 -0.12 4.52 16
18 C -0.49 -26.02 9.07 23.46 0.21 -25.80 16
19 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16
20 C 0.03 1.64 5.18 85.25 0.44 2.09 16
21 N -0.82 -42.19 10.83 21.82 0.24 -41.95 16
22 Si 0.99 37.29 29.59 68.60 2.03 39.31 16
23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16
24 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16
25 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16
26 C -0.24 -11.88 9.80 22.73 0.22 -11.66 16
27 C -0.06 -2.80 9.67 22.22 0.21 -2.59 16
28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
29 H 0.07 0.94 6.75 -2.39 -0.02 0.93 16
30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16
31 H 0.05 0.95 8.04 -2.39 -0.02 0.93 16
32 H 0.05 1.32 6.14 -2.39 -0.01 1.30 16
33 H 0.12 1.27 6.66 -2.39 -0.02 1.26 16
34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
36 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16
37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
38 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16
39 H 0.08 2.58 8.07 -2.38 -0.02 2.56 16
40 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16
41 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16
42 H 0.11 5.87 6.06 -2.91 -0.02 5.85 16
43 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16
44 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16
45 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16
Total: -1.00 -62.56 369.11 2.54 -60.02
By element:
Atomic # 1 Polarization: 28.78 SS G_CDS: 0.98 Total: 29.76 kcal
Atomic # 6 Polarization: -35.38 SS G_CDS: 4.80 Total: -30.58 kcal
Atomic # 7 Polarization: -53.86 SS G_CDS: -3.48 Total: -57.34 kcal
Atomic # 8 Polarization: -39.38 SS G_CDS: -1.79 Total: -41.18 kcal
Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.31 kcal
Total: -62.56 2.54 -60.02 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000751500676.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.897 kcal
(2) G-P(sol) polarization free energy of solvation -62.562 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.458 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds