Wall clock time and date at job start Tue Mar 31 2020 12:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.46912 * 2 1 4 4 C 1.47014 * 111.00060 * 46.36707 * 3 2 1 5 5 C 1.53100 * 109.25926 * 182.39159 * 4 3 2 6 6 O 1.43016 * 109.25975 * 303.15319 * 5 4 3 7 7 C 1.43026 * 113.77737 * 58.64127 * 6 5 4 8 8 C 1.47020 * 111.00098 * 170.00123 * 3 2 1 9 9 H 1.08991 * 109.50756 * 297.58709 * 8 3 2 10 10 C 1.50698 * 109.50480 * 57.67503 * 8 3 2 11 11 O 1.20831 * 120.00081 * 359.91120 * 10 8 3 12 12 O 1.34227 * 120.00045 * 179.91450 * 10 8 3 13 13 C 1.45208 * 117.00092 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47113 * 179.97438 * 13 12 10 15 15 C 1.38635 * 119.74938 * 270.25624 * 14 13 12 16 16 C 1.37619 * 120.24352 * 180.25874 * 15 14 13 17 17 C 1.40711 * 119.74798 * 359.46791 * 16 15 14 18 18 C 1.41396 * 120.24787 * 180.29782 * 17 16 15 19 19 H 1.08005 * 119.99505 * 335.28837 * 18 17 16 20 20 C 1.39942 * 120.00083 * 155.28075 * 18 17 16 21 21 N 1.30817 * 120.00502 * 342.23482 * 20 18 17 22 22 Si 1.86807 * 119.99811 * 162.22853 * 20 18 17 23 23 H 1.48505 * 109.46906 * 94.66663 * 22 20 18 24 24 H 1.48499 * 109.47220 * 214.66572 * 22 20 18 25 25 H 1.48500 * 109.47278 * 334.66810 * 22 20 18 26 26 C 1.40719 * 119.50966 * 0.27391 * 17 16 15 27 27 C 1.37612 * 119.74521 * 0.02562 * 26 17 16 28 28 H 1.08993 * 109.47557 * 59.99891 * 1 2 3 29 29 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47122 * 299.99810 * 1 2 3 31 31 H 1.08994 * 109.47196 * 240.00403 * 2 1 3 32 32 H 1.08993 * 109.47557 * 120.00109 * 2 1 3 33 33 H 1.09000 * 109.50547 * 302.32399 * 4 3 2 34 34 H 1.08997 * 109.50472 * 62.45856 * 4 3 2 35 35 H 1.09005 * 109.50918 * 63.08567 * 5 4 3 36 36 H 1.08992 * 109.50962 * 183.21817 * 5 4 3 37 37 H 1.09000 * 109.54862 * 181.43887 * 7 6 5 38 38 H 1.09002 * 109.46721 * 61.31149 * 7 6 5 39 39 H 1.09003 * 109.46654 * 60.00015 * 13 12 10 40 40 H 1.08997 * 109.47205 * 300.00321 * 13 12 10 41 41 H 1.07995 * 119.87697 * 0.02562 * 15 14 13 42 42 H 1.07999 * 120.12174 * 179.73950 * 16 15 14 43 43 H 0.97001 * 120.00527 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.12678 * 180.02562 * 26 17 16 45 45 H 1.08006 * 119.87565 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3023 2.1974 0.9934 5 6 1.8007 3.6430 0.9184 6 8 3.2163 3.6651 1.1213 7 6 3.9471 2.8843 0.1716 8 6 3.4696 1.4313 0.2383 9 1 3.6898 1.0207 1.2236 10 6 4.1787 0.6197 -0.8150 11 8 3.5425 0.0585 -1.6754 12 8 5.5172 0.5202 -0.7974 13 6 6.1327 -0.2783 -1.8424 14 6 7.6289 -0.2741 -1.6624 15 6 8.3927 0.7078 -2.2744 16 6 9.7603 0.7182 -2.1212 17 6 10.3818 -0.2661 -1.3307 18 6 11.7855 -0.2617 -1.1610 19 1 12.4178 0.2011 -1.9043 20 6 12.3555 -0.8570 -0.0300 21 7 11.6175 -1.1033 1.0217 22 14 14.1702 -1.3000 -0.0220 23 1 14.9467 -0.1953 0.5963 24 1 14.3723 -2.5456 0.7608 25 1 14.6344 -1.5110 -1.4167 26 6 9.5959 -1.2547 -0.7099 27 6 8.2306 -1.2493 -0.8821 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.2332 2.1697 0.7827 34 1 1.4878 1.7997 1.9911 35 1 1.5671 4.0583 -0.0620 36 1 1.3130 4.2368 1.6914 37 1 5.0110 2.9289 0.4044 38 1 3.7764 3.2779 -0.8305 39 1 5.8831 0.1431 -2.8162 40 1 5.7621 -1.3016 -1.7836 41 1 7.9130 1.4651 -2.8767 42 1 10.3538 1.4815 -2.6023 43 1 12.0124 -1.5162 1.8055 44 1 10.0625 -2.0147 -0.1007 45 1 7.6255 -2.0073 -0.4069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751500677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:21 Heat of formation + Delta-G solvation = -99.648885 kcal Electronic energy + Delta-G solvation = -26552.669045 eV Core-core repulsion = 22728.283652 eV Total energy + Delta-G solvation = -3824.385393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82171 -39.25798 -37.70164 -36.66443 -35.72554 -33.89954 -32.29623 -30.90471 -30.73944 -29.39357 -27.51434 -26.82774 -25.19714 -23.77758 -22.51633 -21.44342 -21.10399 -20.16413 -20.07470 -17.69267 -17.41169 -16.97417 -16.67809 -16.08081 -15.79010 -15.38860 -15.30175 -15.17851 -14.64302 -14.38301 -13.98463 -13.97650 -13.50980 -13.45710 -12.79614 -12.61365 -12.36507 -12.22266 -12.09599 -12.04994 -11.88295 -11.76046 -11.60847 -11.30336 -11.16092 -11.01621 -10.86771 -10.75792 -10.47386 -10.23080 -10.17636 -9.81544 -9.66277 -9.49447 -9.23805 -8.63318 -7.58588 -7.47432 -6.88700 -4.48405 2.31122 2.35016 2.86192 2.98738 3.01491 3.06021 3.20300 3.44039 3.78908 3.84405 4.47609 4.50859 4.63015 4.74657 4.82901 4.91706 5.02266 5.09967 5.15487 5.25421 5.33606 5.44299 5.54225 5.58442 5.63084 5.64856 5.67183 5.69601 5.91212 5.98650 6.03619 6.22790 6.28797 6.57631 6.67900 6.81135 6.85024 6.89652 6.95549 7.15948 7.24131 7.49494 7.71585 7.93719 7.98228 8.01833 8.17159 8.51761 8.76530 8.84557 10.05102 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.002487 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.767882 B =11254.009885 C =11591.062342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 N -0.519 5.519 4 C 0.014 3.986 5 C 0.058 3.942 6 O -0.376 6.376 7 C 0.077 3.923 8 C 0.055 3.945 9 H 0.087 0.913 10 C 0.464 3.536 11 O -0.500 6.500 12 O -0.348 6.348 13 C 0.138 3.862 14 C -0.237 4.237 15 C -0.062 4.062 16 C -0.230 4.230 17 C 0.119 3.881 18 C -0.455 4.455 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.171 4.171 27 C -0.075 4.075 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.030 0.970 33 H 0.097 0.903 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.283 0.717 44 H 0.119 0.881 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 4.085 1.659 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.095 4.095 3 N -0.246 5.246 4 C -0.114 4.114 5 C -0.019 4.019 6 O -0.294 6.294 7 C 0.000 4.000 8 C -0.055 4.055 9 H 0.104 0.896 10 C 0.305 3.695 11 O -0.388 6.388 12 O -0.264 6.264 13 C 0.066 3.934 14 C -0.239 4.239 15 C -0.081 4.081 16 C -0.249 4.249 17 C 0.116 3.884 18 C -0.484 4.484 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.190 4.190 27 C -0.094 4.094 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.137 0.863 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.974 4.104 1.311 17.512 hybrid contribution 0.741 -0.871 0.715 1.349 sum -16.233 3.232 2.025 16.675 Atomic orbital electron populations 1.21900 0.94871 1.02024 1.02096 1.22556 0.95820 0.88220 1.02879 1.62108 1.01018 1.12687 1.48813 1.22955 1.00013 0.94422 0.93992 1.22759 0.81632 0.95175 1.02325 1.88052 1.18032 1.69443 1.53919 1.22620 0.97285 0.86209 0.93883 1.21942 0.89022 0.97860 0.96662 0.89574 1.23060 0.82264 0.79255 0.84872 1.90542 1.67040 1.44509 1.36753 1.86724 1.19839 1.66370 1.53452 1.21764 0.90984 0.93107 0.87568 1.18670 0.90312 1.03407 1.11496 1.20390 0.94047 0.95766 0.97871 1.20964 0.93420 1.01553 1.09013 1.17688 0.93315 0.88785 0.88587 1.19682 0.92175 1.31570 1.04990 0.90140 1.25973 1.00814 0.93077 0.94538 1.69823 1.38278 1.30178 1.02601 0.86280 0.81894 0.78819 0.79685 1.19426 1.19921 1.18302 1.21282 0.92160 1.00705 1.04841 1.20528 0.95145 0.97035 0.96644 0.91673 0.92012 0.92765 0.87171 0.95219 0.88455 0.93675 0.91992 0.88149 0.86407 0.91563 0.91958 0.92052 0.89259 0.88682 0.90617 0.86293 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.18 37.15 0.34 -0.98 16 2 C 0.03 0.37 5.34 -3.83 -0.02 0.35 16 3 N -0.52 -6.19 4.51 -227.74 -1.03 -7.22 16 4 C 0.01 0.13 4.94 -3.71 -0.02 0.11 16 5 C 0.06 0.53 7.01 37.21 0.26 0.79 16 6 O -0.38 -4.53 10.82 -35.23 -0.38 -4.92 16 7 C 0.08 0.96 6.22 37.21 0.23 1.19 16 8 C 0.06 0.73 2.46 -68.75 -0.17 0.56 16 9 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 10 C 0.46 7.43 6.99 36.00 0.25 7.68 16 11 O -0.50 -8.75 13.45 -18.75 -0.25 -9.01 16 12 O -0.35 -6.27 10.13 -39.25 -0.40 -6.67 16 13 C 0.14 2.56 5.58 36.01 0.20 2.77 16 14 C -0.24 -5.15 5.54 -104.33 -0.58 -5.73 16 15 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16 16 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 17 C 0.12 3.09 5.57 -106.82 -0.60 2.50 16 18 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 19 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 20 C 0.08 1.82 5.14 -17.35 -0.09 1.74 16 21 N -0.78 -19.68 10.97 55.55 0.61 -19.07 16 22 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 27 C -0.07 -1.72 9.67 -39.66 -0.38 -2.11 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.40 6.28 -51.93 -0.33 0.07 16 31 H 0.11 1.54 5.50 -51.93 -0.29 1.25 16 32 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.10 0.72 6.05 -51.93 -0.31 0.41 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 44 H 0.12 3.10 6.18 -52.48 -0.32 2.78 16 45 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -28.10 365.39 -9.69 -37.79 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.71 Total: 6.12 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.01 Total: -15.50 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: -0.42 Total: -26.29 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.03 Total: -20.59 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.10 -9.69 -37.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751500677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.855 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds